© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10849 |
| Gene name | |
| Location | Contig_913:9067..10926 |
| Strand | + |
| Gene length (bp) | 1859 |
| Transcript length (bp) | 1803 |
| Coding sequence length (bp) | 1803 |
| Protein length (aa) | 601 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10391 | DNA_pol_lambd_f | Fingers domain of DNA polymerase lambda | 3.0E-20 | 526 | 575 |
| PF14716 | HHH_8 | Helix-hairpin-helix domain | 2.9E-18 | 441 | 506 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UGP5|DPOLL_HUMAN | DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1 | 213 | 582 | 6.0E-29 |
| sp|Q4R380|DPOLL_MACFA | DNA polymerase lambda OS=Macaca fascicularis GN=POLL PE=2 SV=1 | 213 | 582 | 1.0E-28 |
| sp|Q5RKI3|DPOLL_RAT | DNA polymerase lambda OS=Rattus norvegicus GN=Poll PE=2 SV=1 | 213 | 582 | 1.0E-28 |
| sp|Q9QXE2|DPOLL_MOUSE | DNA polymerase lambda OS=Mus musculus GN=Poll PE=2 SV=1 | 213 | 582 | 2.0E-28 |
| sp|Q27958|DPOLB_BOVIN | DNA polymerase beta OS=Bos taurus GN=POLB PE=2 SV=3 | 438 | 590 | 7.0E-21 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UGP5|DPOLL_HUMAN | DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1 | 213 | 582 | 6.0E-29 |
| sp|Q4R380|DPOLL_MACFA | DNA polymerase lambda OS=Macaca fascicularis GN=POLL PE=2 SV=1 | 213 | 582 | 1.0E-28 |
| sp|Q5RKI3|DPOLL_RAT | DNA polymerase lambda OS=Rattus norvegicus GN=Poll PE=2 SV=1 | 213 | 582 | 1.0E-28 |
| sp|Q9QXE2|DPOLL_MOUSE | DNA polymerase lambda OS=Mus musculus GN=Poll PE=2 SV=1 | 213 | 582 | 2.0E-28 |
| sp|Q27958|DPOLB_BOVIN | DNA polymerase beta OS=Bos taurus GN=POLB PE=2 SV=3 | 438 | 590 | 7.0E-21 |
| sp|Q8K409|DPOLB_MOUSE | DNA polymerase beta OS=Mus musculus GN=Polb PE=1 SV=3 | 438 | 590 | 1.0E-20 |
| sp|P06746|DPOLB_HUMAN | DNA polymerase beta OS=Homo sapiens GN=POLB PE=1 SV=3 | 438 | 590 | 2.0E-20 |
| sp|O57383|DPOLB_XENLA | DNA polymerase beta OS=Xenopus laevis GN=polb PE=1 SV=3 | 438 | 590 | 2.0E-20 |
| sp|P06766|DPOLB_RAT | DNA polymerase beta OS=Rattus norvegicus GN=Polb PE=1 SV=4 | 438 | 597 | 3.0E-20 |
| sp|Q6DRD3|DPOLB_DANRE | DNA polymerase beta OS=Danio rerio GN=polb PE=2 SV=2 | 438 | 590 | 5.0E-18 |
| sp|Q9JIW4|DPOLM_MOUSE | DNA-directed DNA/RNA polymerase mu OS=Mus musculus GN=Polm PE=1 SV=2 | 441 | 596 | 1.0E-13 |
| sp|Q9NP87|DPOLM_HUMAN | DNA-directed DNA/RNA polymerase mu OS=Homo sapiens GN=POLM PE=1 SV=1 | 439 | 590 | 3.0E-13 |
| sp|Q09693|DPO4_SCHPO | DNA polymerase type-X family protein pol4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol4 PE=3 SV=1 | 424 | 595 | 1.0E-11 |
| sp|Q92089|TDT_ONCMY | DNA nucleotidylexotransferase OS=Oncorhynchus mykiss GN=dntt PE=2 SV=1 | 428 | 590 | 8.0E-11 |
| sp|O57486|TDT_AMBME | DNA nucleotidylexotransferase OS=Ambystoma mexicanum GN=DNTT PE=2 SV=2 | 429 | 590 | 1.0E-10 |
| sp|O02789|TDT_MONDO | DNA nucleotidylexotransferase OS=Monodelphis domestica GN=DNTT PE=2 SV=1 | 429 | 590 | 2.0E-10 |
| sp|P42118|TDT_XENLA | DNA nucleotidylexotransferase OS=Xenopus laevis GN=dntt PE=2 SV=1 | 429 | 585 | 7.0E-09 |
| sp|P09838|TDT_MOUSE | DNA nucleotidylexotransferase OS=Mus musculus GN=Dntt PE=1 SV=3 | 428 | 590 | 6.0E-08 |
| sp|P06526|TDT_BOVIN | DNA nucleotidylexotransferase OS=Bos taurus GN=DNTT PE=1 SV=2 | 428 | 590 | 5.0E-06 |
| sp|P04053|TDT_HUMAN | DNA nucleotidylexotransferase OS=Homo sapiens GN=DNTT PE=1 SV=3 | 428 | 590 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0034061 | DNA polymerase activity | Yes |
| GO:0005634 | nucleus | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:0003676 | nucleic acid binding | No |
| GO:0005488 | binding | No |
| GO:0005575 | cellular_component | No |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
| GO:0016779 | nucleotidyltransferase activity | No |
| GO:0044424 | intracellular part | No |
| GO:0003674 | molecular_function | No |
| GO:0016740 | transferase activity | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0043226 | organelle | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0044464 | cell part | No |
| GO:0003824 | catalytic activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0140097 | catalytic activity, acting on DNA | No |
| GO:0043229 | intracellular organelle | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10849 MDPSAEEKVAYFELLRSLGGASPHDDGHGDNDELDALELRDRQLRFRFFRPPPPFPPAPADGRHVGRPAPEEQRG AAPGPVIANTQPGPAARPLPSAGPADDSFADETVVPDSARPAPRSRRGRGHSTPAPAARRRLAAADAREQSPSLH PGARKRKRGGAAAGAPRLRPAEEQVFSGLAFFYVPNNDIAPARRLRIGKAREYGAAWTRSYAGATHIVVDKNLDY ADVAKVVPVAALARGGPKLVNEDYPIDCIQFRSLLDHGQKKYRVAGQPAVAGDDAVSGPPQAPESPDDGKRRDPA PPPPGTPQRSDEPPSQASVVDATPLPAGPQPRSTGATARPRRESPGGAEDELSGFISMMQEFRHLPLDNDDDELA GSEPERAETREDEDDVAASESESESARDGGGRKKAQAKSRRKGGRFEDRFACHHAGEQAALAENANARTVEVLQS MADFYERVGDEWRTLGYRKAITTLKRQRVRIRSEEEAARLPHIGRRIAQKIEEIVTTDRLRRLEYAREEATDGAL QLFLQVYGVGSRQARQWVAQGYRSLDELRKGGVRLTASQAIGVEHFDDLQQAIPRREVEALGAVLPPGRRELARH * |
| Coding | >Hirsu2|10849 ATGGACCCGAGCGCGGAGGAAAAGGTCGCCTACTTCGAGCTCCTCCGAAGCCTGGGCGGCGCGTCGCCGCACGAC GACGGCCACGGCGACAACGACGAGCTGGACGCGCTGGAGCTGCGCGACAGGCAGCTGCGCTTCCGCTTCTTCAGG CCGCCGCCGCCGTTCCCCCCCGCGCCGGCCGACGGCCGACATGTCGGCAGGCCTGCGCCGGAGGAGCAGCGCGGA GCCGCCCCCGGGCCGGTGATTGCAAACACGCAGCCCGGGCCGGCCGCGAGGCCCTTGCCCTCGGCTGGCCCCGCA GACGATTCTTTCGCCGACGAGACGGTCGTGCCGGACTCGGCTCGCCCCGCGCCCAGGTCGCGCCGTGGTCGCGGC CACTCTACCCCGGCGCCGGCGGCGAGGAGGAGATTGGCAGCAGCGGACGCGCGCGAGCAATCGCCCTCCCTCCAC CCGGGCGCGAGGAAGAGGAAGCGAGGCGGCGCAGCGGCAGGGGCGCCGAGGCTGCGCCCGGCGGAGGAGCAGGTC TTCAGCGGCCTCGCCTTCTTCTACGTCCCGAACAACGACATCGCGCCGGCCAGGCGGCTCCGCATCGGCAAGGCC AGGGAGTACGGCGCGGCGTGGACGCGGAGCTACGCCGGCGCGACGCACATCGTCGTCGACAAGAACCTCGACTAC GCCGACGTCGCCAAGGTCGTGCCCGTCGCCGCCCTGGCCCGCGGGGGCCCGAAGCTGGTCAACGAGGACTACCCG ATCGACTGCATACAGTTCCGCTCCCTGCTCGACCACGGCCAGAAAAAGTACCGGGTCGCCGGCCAGCCGGCCGTC GCCGGAGACGATGCTGTCTCGGGCCCGCCGCAAGCGCCGGAGAGCCCCGACGACGGGAAGCGACGGGATCCTGCG CCTCCCCCGCCGGGCACGCCCCAGAGGAGCGACGAGCCCCCTTCCCAAGCGAGCGTCGTGGACGCAACGCCGCTT CCCGCGGGTCCGCAGCCCCGAAGCACCGGCGCGACGGCTCGCCCGCGGCGGGAGTCGCCGGGGGGGGCCGAGGAC GAGCTGTCGGGCTTCATCTCCATGATGCAGGAGTTTCGGCATCTGCCGCTCGACAACGACGACGACGAGCTCGCG GGGTCCGAACCCGAACGGGCCGAGACGAGGGAAGACGAGGACGATGTCGCTGCCTCGGAGTCGGAATCGGAATCG GCTCGCGACGGCGGCGGCAGGAAGAAGGCGCAGGCGAAGAGCAGACGGAAAGGCGGCCGATTCGAGGACCGGTTC GCCTGCCACCACGCCGGCGAGCAGGCGGCGCTGGCGGAGAACGCCAACGCGCGCACGGTGGAGGTGCTCCAGAGC ATGGCCGACTTCTACGAGCGGGTGGGCGACGAGTGGAGGACGCTGGGGTACCGCAAGGCCATCACGACGCTGAAG CGGCAGAGGGTCAGGATCCGCAGCGAGGAGGAGGCGGCGCGGCTGCCGCACATCGGGCGGCGGATCGCGCAGAAG ATTGAGGAGATTGTGACGACGGACCGGCTGCGGCGGCTCGAGTACGCGCGCGAGGAGGCGACGGACGGAGCGCTC CAGCTCTTCCTGCAGGTCTACGGCGTCGGCAGCAGGCAGGCCCGGCAGTGGGTGGCGCAGGGGTACCGCAGCCTC GACGAGCTGAGGAAGGGCGGCGTCAGGCTGACGGCCAGCCAGGCGATCGGGGTCGAGCACTTCGACGACCTGCAG CAGGCGATCCCGCGGCGCGAGGTGGAGGCGCTCGGGGCGGTGCTACCGCCGGGGCGCCGAGAGCTCGCGCGACAT TGA |
| Transcript | >Hirsu2|10849 ATGGACCCGAGCGCGGAGGAAAAGGTCGCCTACTTCGAGCTCCTCCGAAGCCTGGGCGGCGCGTCGCCGCACGAC GACGGCCACGGCGACAACGACGAGCTGGACGCGCTGGAGCTGCGCGACAGGCAGCTGCGCTTCCGCTTCTTCAGG CCGCCGCCGCCGTTCCCCCCCGCGCCGGCCGACGGCCGACATGTCGGCAGGCCTGCGCCGGAGGAGCAGCGCGGA GCCGCCCCCGGGCCGGTGATTGCAAACACGCAGCCCGGGCCGGCCGCGAGGCCCTTGCCCTCGGCTGGCCCCGCA GACGATTCTTTCGCCGACGAGACGGTCGTGCCGGACTCGGCTCGCCCCGCGCCCAGGTCGCGCCGTGGTCGCGGC CACTCTACCCCGGCGCCGGCGGCGAGGAGGAGATTGGCAGCAGCGGACGCGCGCGAGCAATCGCCCTCCCTCCAC CCGGGCGCGAGGAAGAGGAAGCGAGGCGGCGCAGCGGCAGGGGCGCCGAGGCTGCGCCCGGCGGAGGAGCAGGTC TTCAGCGGCCTCGCCTTCTTCTACGTCCCGAACAACGACATCGCGCCGGCCAGGCGGCTCCGCATCGGCAAGGCC AGGGAGTACGGCGCGGCGTGGACGCGGAGCTACGCCGGCGCGACGCACATCGTCGTCGACAAGAACCTCGACTAC GCCGACGTCGCCAAGGTCGTGCCCGTCGCCGCCCTGGCCCGCGGGGGCCCGAAGCTGGTCAACGAGGACTACCCG ATCGACTGCATACAGTTCCGCTCCCTGCTCGACCACGGCCAGAAAAAGTACCGGGTCGCCGGCCAGCCGGCCGTC GCCGGAGACGATGCTGTCTCGGGCCCGCCGCAAGCGCCGGAGAGCCCCGACGACGGGAAGCGACGGGATCCTGCG CCTCCCCCGCCGGGCACGCCCCAGAGGAGCGACGAGCCCCCTTCCCAAGCGAGCGTCGTGGACGCAACGCCGCTT CCCGCGGGTCCGCAGCCCCGAAGCACCGGCGCGACGGCTCGCCCGCGGCGGGAGTCGCCGGGGGGGGCCGAGGAC GAGCTGTCGGGCTTCATCTCCATGATGCAGGAGTTTCGGCATCTGCCGCTCGACAACGACGACGACGAGCTCGCG GGGTCCGAACCCGAACGGGCCGAGACGAGGGAAGACGAGGACGATGTCGCTGCCTCGGAGTCGGAATCGGAATCG GCTCGCGACGGCGGCGGCAGGAAGAAGGCGCAGGCGAAGAGCAGACGGAAAGGCGGCCGATTCGAGGACCGGTTC GCCTGCCACCACGCCGGCGAGCAGGCGGCGCTGGCGGAGAACGCCAACGCGCGCACGGTGGAGGTGCTCCAGAGC ATGGCCGACTTCTACGAGCGGGTGGGCGACGAGTGGAGGACGCTGGGGTACCGCAAGGCCATCACGACGCTGAAG CGGCAGAGGGTCAGGATCCGCAGCGAGGAGGAGGCGGCGCGGCTGCCGCACATCGGGCGGCGGATCGCGCAGAAG ATTGAGGAGATTGTGACGACGGACCGGCTGCGGCGGCTCGAGTACGCGCGCGAGGAGGCGACGGACGGAGCGCTC CAGCTCTTCCTGCAGGTCTACGGCGTCGGCAGCAGGCAGGCCCGGCAGTGGGTGGCGCAGGGGTACCGCAGCCTC GACGAGCTGAGGAAGGGCGGCGTCAGGCTGACGGCCAGCCAGGCGATCGGGGTCGAGCACTTCGACGACCTGCAG CAGGCGATCCCGCGGCGCGAGGTGGAGGCGCTCGGGGCGGTGCTACCGCCGGGGCGCCGAGAGCTCGCGCGACAT TGA |
| Gene | >Hirsu2|10849 ATGGACCCGAGCGCGGAGGAAAAGGTCGCCTACTTCGAGCTCCTCCGAAGCCTGGGCGGCGCGTCGCCGCACGAC GACGGCCACGGCGACAACGACGAGCTGGACGCGCTGGAGCTGCGCGACAGGCAGCTGCGCTTCCGCTTCTTCAGG CCGCCGCCGCCGTTCCCCCCCGCGCCGGCCGACGGCCGACATGTCGGCAGGCCTGCGCCGGAGGAGCAGCGCGGA GCCGCCCCCGGGCCGGTGATTGCAAACACGCAGCCCGGGCCGGCCGCGAGGCCCTTGCCCTCGGCTGGCCCCGCA GACGATTCTTTCGCCGACGAGACGGTCGTGCCGGACTCGGCTCGCCCCGCGCCCAGGTCGCGCCGTGGTCGCGGC CACTCTACCCCGGCGCCGGCGGCGAGGAGGAGATTGGCAGCAGCGGACGCGCGCGAGCAATCGCCCTCCCTCCAC CCGGGCGCGAGGAAGAGGAAGCGAGGCGGCGCAGCGGCAGGGGCGCCGAGGCTGCGCCCGGCGGAGGAGCAGGTC TTCAGCGGCCTCGCCTTCTTCTACGTCCCGAACAACGACATCGCGCCGGCCAGGCGGCTCCGCATCGGCAAGGCC AGGGAGTACGGCGCGGCGTGGACGCGGAGCTACGCCGGCGCGACGCACATCGTCGTCGACAAGAACCTCGACTAC GCCGACGTCGCCAAGGTCGTGCCCGTCGCCGCCCTGGCCCGCGGGGGCCCGAAGCTGGTCAACGAGGACTACCCG ATCGACTGCATACAGTTCCGCTCCCTGCTCGACCACGGCCAGAAAAAGTACCGGGTCGCCGGCCAGCCGGCCGTC GCCGGAGACGATGCTGTCTCGGGCCCGCCGCAAGCGCCGGAGAGCCCCGACGACGGGAAGCGACGGGATCCTGCG CCTCCCCCGCCGGGCACGCCCCAGAGGAGCGACGAGCCCCCTTCCCAAGCGAGCGTCGTGGACGCAACGCCGCTT CCCGCGGGTCCGCAGCCCCGAAGCACCGGCGCGACGGCTCGCCCGCGGCGGGAGTCGCCGGGGGGGGCCGAGGAC GAGCTGTCGGGCTTCATCTCCATGATGCAGGAGTTTCGGCATCTGCCGCTCGACAACGACGACGACGAGCTCGCG GGGTCCGAACCCGAACGGGCCGAGACGAGGGAAGACGAGGACGATGTCGCTGCCTCGGAGTCGGAATCGGAATCG GCTCGCGACGGCGGCGGCAGGAAGAAGGCGCAGGCGAAGAGCAGACGGAAAGGCGGCCGATTCGAGGACCGGTTC GCCTGCCACCACGCCGGCGAGCAGGCGGCGCTGGCGGAGAACGCCAACGCGCGCACGGTGGAGGTGCTCCAGAGC ATGGCCGACTTCTACGAGCGGGTGGGCGACGAGTGGAGGACGCTGGGGTACCGCAAGGCCATCACGACGCTGAAG CGGCAGAGGGTCAGGATCCGCAGCGAGGAGGAGGCGGCGCGGCTGCCGCACATCGGGCGGCGGATCGCGCAGAAG ATTGAGGAGATTGTGACGACGGACCGGCTGCGGCGGCTCGAGTACGCGCGCGAGGAGGCGACGGACGGAGCGCTC CAGCTCTTCCTGCAGGTCTACGGCGTCGGCAGCAGGCAGGCCCGGCAGTGGGTGGCGCAGGGGTACCGCAGCCTC GACGAGCTGAGGAAGGGCGGCGTCAGGCTGACGGCCAGCCAGGCGATCGGGGTCGAGCACTTCGACGACCTGCAG CAGGCGATCCCGCGGCGCGAGGTGGAGGCGCTCGGGGCGGTGGTGCGGCGCGCGGCGGCGCGGCTCGACCCGGCC GTCGAGCTCATCGTCGGCGGCAGCTACCGCCGGGGCGCCGAGAGCTCGCGCGACATTGA |