Protein ID | Hirsu2|1081 |
Gene name | |
Location | Contig_1224:5288..5775 |
Strand | + |
Gene length (bp) | 487 |
Transcript length (bp) | 429 |
Coding sequence length (bp) | 429 |
Protein length (aa) | 143 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF20222 | DUF6581 | Family of unknown function (DUF6581) | 1.5E-37 | 4 | 137 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | 0.5025 | 0.4191 | 0.2597 | 0.0883 | 0.2462 | 0.013 | 0.198 | 0.2366 | 0.2176 | 0.0745 |
Orthofinder run ID | 4 |
Orthogroup | 378 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1081 MSHSPKYDEAAAFKGHLDSTFRRHETMTVPYTLNDGAMMALTNMSAAGRIRLMPIDLPNIPLGFEPGNYESRKYP KSYYYFALEVVPTETYEYNEDIEVLHAVTRESPPTESLRGELPQWVSLLGQSNTQRWSEMLALSTLS* |
Coding | >Hirsu2|1081 ATGTCCCATAGCCCCAAGTACGATGAAGCGGCGGCGTTCAAGGGGCACCTCGACTCCACATTTCGCCGGCATGAA ACCATGACGGTACCGTACACGCTCAACGACGGCGCCATGATGGCCTTGACCAATATGAGCGCGGCAGGGAGGATT CGGTTGATGCCCATAGACCTGCCCAATATCCCTCTTGGCTTTGAGCCGGGCAACTACGAGAGCCGGAAATACCCT AAGTCGTACTACTATTTCGCTCTCGAGGTGGTACCGACAGAAACGTACGAGTACAATGAGGATATCGAGGTCCTG CATGCCGTCACCAGGGAAAGCCCGCCTACGGAAAGCCTGCGAGGCGAACTGCCGCAGTGGGTCAGTCTTCTGGGG CAGAGCAACACGCAGCGATGGTCCGAGATGTTGGCACTCTCCACCCTCTCCTAG |
Transcript | >Hirsu2|1081 ATGTCCCATAGCCCCAAGTACGATGAAGCGGCGGCGTTCAAGGGGCACCTCGACTCCACATTTCGCCGGCATGAA ACCATGACGGTACCGTACACGCTCAACGACGGCGCCATGATGGCCTTGACCAATATGAGCGCGGCAGGGAGGATT CGGTTGATGCCCATAGACCTGCCCAATATCCCTCTTGGCTTTGAGCCGGGCAACTACGAGAGCCGGAAATACCCT AAGTCGTACTACTATTTCGCTCTCGAGGTGGTACCGACAGAAACGTACGAGTACAATGAGGATATCGAGGTCCTG CATGCCGTCACCAGGGAAAGCCCGCCTACGGAAAGCCTGCGAGGCGAACTGCCGCAGTGGGTCAGTCTTCTGGGG CAGAGCAACACGCAGCGATGGTCCGAGATGTTGGCACTCTCCACCCTCTCCTAG |
Gene | >Hirsu2|1081 ATGTCCCATAGCCCCAAGTACGATGAAGCGGCGGCGTTCAAGGGGCACCTCGACTCCACATTTCGCCGGCATGAA ACCATGACGGTACCGTACACGCTCAACGACGGCGCCATGATGGCCTTGACCAATATGAGCGCGGCAGGGAGGATT CGGTTGATGCCCATAGACCTGCCCAATATCCCTCTTGGCTTTGAGCCGGGCAACTACGAGAGCCGGAAATACCCT AAGTCGTACTACTATTTCGCTCTCGAGGTGGTACCGACAGAAACGTACGAGTACAATGAGGATATCGAGGTCCTG CATGCCGTCACCAGGGAAAGCCCGCCTACGGAAAGCCTGCGAGGCGAACTGCCGCAGTGGGTCAGTCTTCTGGGG CAGAGCAACACGCAGCGATGGTCCGAGATGTTGGGTGCGTTCTGCTTTTCCTTCGCCACGCGAGGATCAATGACC ATCGAGGGCATCTGCAGCACTCTCCACCCTCTCCTAG |