© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10795 |
| Gene name | |
| Location | Contig_904:1265..2495 |
| Strand | + |
| Gene length (bp) | 1230 |
| Transcript length (bp) | 1230 |
| Coding sequence length (bp) | 1230 |
| Protein length (aa) | 410 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00144 | Beta-lactamase | Beta-lactamase | 4.1E-54 | 27 | 378 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P77619|YFEW_ECOLI | UPF0214 protein YfeW OS=Escherichia coli (strain K12) GN=yfeW PE=3 SV=2 | 38 | 370 | 1.0E-33 |
| sp|B5R4I5|YFEW_SALEP | UPF0214 protein YfeW OS=Salmonella enteritidis PT4 (strain P125109) GN=yfeW PE=3 SV=1 | 1 | 370 | 2.0E-32 |
| sp|B4TR50|YFEW_SALSV | UPF0214 protein YfeW OS=Salmonella schwarzengrund (strain CVM19633) GN=yfeW PE=3 SV=1 | 1 | 370 | 3.0E-32 |
| sp|Q8XBJ0|YFEW_ECO57 | UPF0214 protein YfeW OS=Escherichia coli O157:H7 GN=yfeW PE=3 SV=1 | 3 | 370 | 3.0E-32 |
| sp|C0PZ64|YFEW_SALPC | UPF0214 protein YfeW OS=Salmonella paratyphi C (strain RKS4594) GN=yfeW PE=3 SV=1 | 1 | 370 | 4.0E-32 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P77619|YFEW_ECOLI | UPF0214 protein YfeW OS=Escherichia coli (strain K12) GN=yfeW PE=3 SV=2 | 38 | 370 | 1.0E-33 |
| sp|B5R4I5|YFEW_SALEP | UPF0214 protein YfeW OS=Salmonella enteritidis PT4 (strain P125109) GN=yfeW PE=3 SV=1 | 1 | 370 | 2.0E-32 |
| sp|B4TR50|YFEW_SALSV | UPF0214 protein YfeW OS=Salmonella schwarzengrund (strain CVM19633) GN=yfeW PE=3 SV=1 | 1 | 370 | 3.0E-32 |
| sp|Q8XBJ0|YFEW_ECO57 | UPF0214 protein YfeW OS=Escherichia coli O157:H7 GN=yfeW PE=3 SV=1 | 3 | 370 | 3.0E-32 |
| sp|C0PZ64|YFEW_SALPC | UPF0214 protein YfeW OS=Salmonella paratyphi C (strain RKS4594) GN=yfeW PE=3 SV=1 | 1 | 370 | 4.0E-32 |
| sp|A9N307|YFEW_SALPB | UPF0214 protein YfeW OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yfeW PE=3 SV=1 | 1 | 370 | 4.0E-32 |
| sp|B4T0K5|YFEW_SALNS | UPF0214 protein YfeW OS=Salmonella newport (strain SL254) GN=yfeW PE=3 SV=1 | 1 | 370 | 4.0E-32 |
| sp|B5FQG8|YFEW_SALDC | UPF0214 protein YfeW OS=Salmonella dublin (strain CT_02021853) GN=yfeW PE=3 SV=1 | 1 | 370 | 4.0E-32 |
| sp|Q57LN2|YFEW_SALCH | UPF0214 protein YfeW OS=Salmonella choleraesuis (strain SC-B67) GN=yfeW PE=3 SV=1 | 1 | 370 | 4.0E-32 |
| sp|Q8Z4S7|YFEW_SALTI | UPF0214 protein YfeW OS=Salmonella typhi GN=yfeW PE=3 SV=1 | 1 | 370 | 4.0E-32 |
| sp|Q8ZN80|YFEW_SALTY | UPF0214 protein YfeW OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yfeW PE=3 SV=1 | 1 | 370 | 6.0E-32 |
| sp|B4TD53|YFEW_SALHS | UPF0214 protein YfeW OS=Salmonella heidelberg (strain SL476) GN=yfeW PE=3 SV=1 | 1 | 370 | 2.0E-31 |
| sp|B5BB26|YFEW_SALPK | UPF0214 protein YfeW OS=Salmonella paratyphi A (strain AKU_12601) GN=yfeW PE=3 SV=1 | 1 | 370 | 3.0E-31 |
| sp|Q5PCQ2|YFEW_SALPA | UPF0214 protein YfeW OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yfeW PE=3 SV=1 | 1 | 370 | 3.0E-31 |
| sp|B5RCU8|YFEW_SALG2 | UPF0214 protein YfeW OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yfeW PE=3 SV=1 | 1 | 370 | 3.0E-31 |
| sp|B5F0K5|YFEW_SALA4 | UPF0214 protein YfeW OS=Salmonella agona (strain SL483) GN=yfeW PE=3 SV=1 | 1 | 370 | 5.0E-31 |
| sp|O05213|YBBE_BACSU | UPF0214 protein YbbE OS=Bacillus subtilis (strain 168) GN=ybbE PE=3 SV=3 | 27 | 370 | 6.0E-31 |
| sp|Q6G6M9|FLP_STAAS | Protein flp OS=Staphylococcus aureus (strain MSSA476) GN=flp PE=3 SV=1 | 27 | 218 | 8.0E-12 |
| sp|Q8NUZ4|FLP_STAAW | Protein flp OS=Staphylococcus aureus (strain MW2) GN=flp PE=3 SV=1 | 27 | 218 | 8.0E-12 |
| sp|Q5HDB2|FLP_STAAC | Protein flp OS=Staphylococcus aureus (strain COL) GN=flp PE=4 SV=1 | 27 | 218 | 5.0E-11 |
| sp|Q7A3Q5|FLP_STAAN | Protein flp OS=Staphylococcus aureus (strain N315) GN=flp PE=1 SV=1 | 27 | 218 | 6.0E-11 |
| sp|Q99RJ0|FLP_STAAM | Protein flp OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=flp PE=3 SV=1 | 27 | 218 | 6.0E-11 |
| sp|Q9KJ74|FLP_STAAU | Protein flp OS=Staphylococcus aureus GN=flp PE=4 SV=1 | 27 | 218 | 7.0E-11 |
| sp|Q2FVH6|FLP_STAA8 | Protein flp OS=Staphylococcus aureus (strain NCTC 8325) GN=flp PE=4 SV=1 | 27 | 218 | 7.0E-11 |
| sp|Q6GDZ1|FLP_STAAR | Protein flp OS=Staphylococcus aureus (strain MRSA252) GN=flp PE=3 SV=1 | 27 | 218 | 1.0E-10 |
| sp|P32959|PBPE_BACSU | Penicillin-binding protein 4* OS=Bacillus subtilis (strain 168) GN=pbpE PE=1 SV=1 | 26 | 409 | 3.0E-10 |
| sp|Q9Y7D1|LOVD_ASPTE | Acyltransferase LovD OS=Aspergillus terreus GN=lovD PE=1 SV=1 | 61 | 375 | 6.0E-10 |
| sp|P15555|DAC_STRSR | D-alanyl-D-alanine carboxypeptidase OS=Streptomyces sp. (strain R61) PE=1 SV=2 | 76 | 224 | 4.0E-09 |
| sp|Q9KX40|ESTB_BURGA | Esterase EstB OS=Burkholderia gladioli GN=estB PE=1 SV=1 | 73 | 215 | 4.0E-07 |
| sp|Q06317|PBP4_AMYLA | Penicillin-binding protein 4 OS=Amycolatopsis lactamdurans GN=pbp PE=3 SV=1 | 71 | 195 | 5.0E-07 |
| sp|O69773|AMPC_PROST | Beta-lactamase OS=Providencia stuartii GN=ampC PE=3 SV=1 | 74 | 210 | 1.0E-06 |
| sp|P0AD70|AMPH_ECOLI | D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH OS=Escherichia coli (strain K12) GN=ampH PE=1 SV=1 | 64 | 210 | 1.0E-06 |
| sp|P0AD71|AMPH_ECO57 | D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH OS=Escherichia coli O157:H7 GN=ampH PE=3 SV=1 | 64 | 210 | 1.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10795 MALDLARFTQARNWSQASHNQVVPIQPGGAVLVGHQGVIVSEFAFGKRKLWASVDGFSGEKLPPDQQEEATVDTI YDIASLTKLFTTVEVMRCVDDGLLDINKTVVSWLPGFAAGGKENVTLFQLLTHTSGLAPDPDPGLYDEAAYPTYE SRIAGILGQPLQNEPGTAYVYSDLSFMTLMLVVEKVRGMGLDEAIGRYTVMLGMRNTYFNRANKEDGIKGDHGNF SIVDRVATQEFQLAAVGPASPRRPQPVRGTVDDENAFALAGVSGHAGLFSTVADTAIFCQMLLNRGRFGGRRVLS PAAVDAIFTDYLGARFPGQDHGLGFELNQRYTAGPMAGPQAASHTGFTGTSLVVERASNTFFILLANRVHPSRNW SSNNIVRQTLGAWVARALGRDVELPVRPNSEQSR* |
| Coding | >Hirsu2|10795 ATGGCCCTAGACCTGGCACGCTTCACCCAGGCCCGGAACTGGAGCCAGGCCTCGCATAACCAGGTGGTGCCGATC CAGCCCGGCGGTGCCGTGCTCGTCGGCCACCAGGGCGTCATCGTGAGCGAATTCGCGTTTGGGAAGCGCAAGCTC TGGGCCAGCGTCGACGGCTTCAGCGGCGAGAAGCTTCCGCCGGACCAGCAGGAGGAGGCAACAGTTGACACCATC TACGACATAGCCAGTCTGACGAAGCTGTTCACGACGGTCGAGGTCATGCGGTGCGTCGACGACGGCCTGCTCGAC ATCAACAAGACGGTCGTCTCATGGCTGCCGGGCTTTGCGGCCGGTGGCAAGGAGAACGTGACGCTGTTCCAGCTA CTGACGCATACGAGCGGCCTGGCGCCGGACCCGGACCCGGGCCTGTACGACGAGGCTGCGTACCCGACGTATGAG TCGAGGATAGCAGGCATCCTAGGCCAGCCTCTCCAGAACGAGCCGGGCACAGCCTATGTCTACTCGGACCTCAGC TTCATGACACTCATGCTCGTGGTCGAAAAGGTCCGAGGCATGGGGCTAGACGAGGCCATCGGACGATATACCGTC ATGCTAGGCATGCGCAACACGTACTTCAACCGCGCCAACAAGGAAGACGGGATCAAAGGAGATCACGGCAACTTC AGCATCGTTGACCGGGTGGCCACGCAGGAGTTCCAGTTGGCGGCCGTGGGCCCGGCATCACCGCGGCGGCCTCAG CCGGTGCGCGGGACCGTCGACGACGAGAACGCGTTCGCGCTGGCGGGCGTCAGCGGTCATGCCGGCCTTTTCTCG ACCGTTGCCGACACGGCCATTTTCTGCCAGATGCTGCTCAACCGCGGGCGCTTCGGCGGGCGGCGCGTGCTGTCG CCGGCGGCCGTCGACGCCATCTTCACCGATTACCTGGGCGCGCGCTTCCCCGGCCAGGACCATGGCTTGGGCTTC GAGCTCAACCAGCGCTACACAGCAGGGCCCATGGCTGGCCCGCAGGCCGCGAGCCACACGGGCTTCACCGGCACT TCGCTCGTCGTCGAACGGGCTAGCAATACCTTCTTTATCTTGCTCGCCAACCGCGTTCATCCCTCGCGCAACTGG TCAAGCAACAACATCGTCAGGCAGACGCTGGGCGCCTGGGTGGCCAGGGCCCTGGGCCGAGACGTCGAGTTGCCA GTCCGTCCGAACTCTGAACAAAGCAGATGA |
| Transcript | >Hirsu2|10795 ATGGCCCTAGACCTGGCACGCTTCACCCAGGCCCGGAACTGGAGCCAGGCCTCGCATAACCAGGTGGTGCCGATC CAGCCCGGCGGTGCCGTGCTCGTCGGCCACCAGGGCGTCATCGTGAGCGAATTCGCGTTTGGGAAGCGCAAGCTC TGGGCCAGCGTCGACGGCTTCAGCGGCGAGAAGCTTCCGCCGGACCAGCAGGAGGAGGCAACAGTTGACACCATC TACGACATAGCCAGTCTGACGAAGCTGTTCACGACGGTCGAGGTCATGCGGTGCGTCGACGACGGCCTGCTCGAC ATCAACAAGACGGTCGTCTCATGGCTGCCGGGCTTTGCGGCCGGTGGCAAGGAGAACGTGACGCTGTTCCAGCTA CTGACGCATACGAGCGGCCTGGCGCCGGACCCGGACCCGGGCCTGTACGACGAGGCTGCGTACCCGACGTATGAG TCGAGGATAGCAGGCATCCTAGGCCAGCCTCTCCAGAACGAGCCGGGCACAGCCTATGTCTACTCGGACCTCAGC TTCATGACACTCATGCTCGTGGTCGAAAAGGTCCGAGGCATGGGGCTAGACGAGGCCATCGGACGATATACCGTC ATGCTAGGCATGCGCAACACGTACTTCAACCGCGCCAACAAGGAAGACGGGATCAAAGGAGATCACGGCAACTTC AGCATCGTTGACCGGGTGGCCACGCAGGAGTTCCAGTTGGCGGCCGTGGGCCCGGCATCACCGCGGCGGCCTCAG CCGGTGCGCGGGACCGTCGACGACGAGAACGCGTTCGCGCTGGCGGGCGTCAGCGGTCATGCCGGCCTTTTCTCG ACCGTTGCCGACACGGCCATTTTCTGCCAGATGCTGCTCAACCGCGGGCGCTTCGGCGGGCGGCGCGTGCTGTCG CCGGCGGCCGTCGACGCCATCTTCACCGATTACCTGGGCGCGCGCTTCCCCGGCCAGGACCATGGCTTGGGCTTC GAGCTCAACCAGCGCTACACAGCAGGGCCCATGGCTGGCCCGCAGGCCGCGAGCCACACGGGCTTCACCGGCACT TCGCTCGTCGTCGAACGGGCTAGCAATACCTTCTTTATCTTGCTCGCCAACCGCGTTCATCCCTCGCGCAACTGG TCAAGCAACAACATCGTCAGGCAGACGCTGGGCGCCTGGGTGGCCAGGGCCCTGGGCCGAGACGTCGAGTTGCCA GTCCGTCCGAACTCTGAACAAAGCAGATGA |
| Gene | >Hirsu2|10795 ATGGCCCTAGACCTGGCACGCTTCACCCAGGCCCGGAACTGGAGCCAGGCCTCGCATAACCAGGTGGTGCCGATC CAGCCCGGCGGTGCCGTGCTCGTCGGCCACCAGGGCGTCATCGTGAGCGAATTCGCGTTTGGGAAGCGCAAGCTC TGGGCCAGCGTCGACGGCTTCAGCGGCGAGAAGCTTCCGCCGGACCAGCAGGAGGAGGCAACAGTTGACACCATC TACGACATAGCCAGTCTGACGAAGCTGTTCACGACGGTCGAGGTCATGCGGTGCGTCGACGACGGCCTGCTCGAC ATCAACAAGACGGTCGTCTCATGGCTGCCGGGCTTTGCGGCCGGTGGCAAGGAGAACGTGACGCTGTTCCAGCTA CTGACGCATACGAGCGGCCTGGCGCCGGACCCGGACCCGGGCCTGTACGACGAGGCTGCGTACCCGACGTATGAG TCGAGGATAGCAGGCATCCTAGGCCAGCCTCTCCAGAACGAGCCGGGCACAGCCTATGTCTACTCGGACCTCAGC TTCATGACACTCATGCTCGTGGTCGAAAAGGTCCGAGGCATGGGGCTAGACGAGGCCATCGGACGATATACCGTC ATGCTAGGCATGCGCAACACGTACTTCAACCGCGCCAACAAGGAAGACGGGATCAAAGGAGATCACGGCAACTTC AGCATCGTTGACCGGGTGGCCACGCAGGAGTTCCAGTTGGCGGCCGTGGGCCCGGCATCACCGCGGCGGCCTCAG CCGGTGCGCGGGACCGTCGACGACGAGAACGCGTTCGCGCTGGCGGGCGTCAGCGGTCATGCCGGCCTTTTCTCG ACCGTTGCCGACACGGCCATTTTCTGCCAGATGCTGCTCAACCGCGGGCGCTTCGGCGGGCGGCGCGTGCTGTCG CCGGCGGCCGTCGACGCCATCTTCACCGATTACCTGGGCGCGCGCTTCCCCGGCCAGGACCATGGCTTGGGCTTC GAGCTCAACCAGCGCTACACAGCAGGGCCCATGGCTGGCCCGCAGGCCGCGAGCCACACGGGCTTCACCGGCACT TCGCTCGTCGTCGAACGGGCTAGCAATACCTTCTTTATCTTGCTCGCCAACCGCGTTCATCCCTCGCGCAACTGG TCAAGCAACAACATCGTCAGGCAGACGCTGGGCGCCTGGGTGGCCAGGGCCCTGGGCCGAGACGTCGAGTTGCCA GTCCGTCCGAACTCTGAACAAAGCAGATGA |