Protein ID | Hirsu2|1079 |
Gene name | |
Location | Contig_1223:473..2553 |
Strand | + |
Gene length (bp) | 2080 |
Transcript length (bp) | 1950 |
Coding sequence length (bp) | 1950 |
Protein length (aa) | 650 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF17004 | SRP_TPR_like | Putative TPR-like repeat | 1.2E-17 | 21 | 149 |
PF08492 | SRP72 | SRP72 RNA-binding domain | 9.0E-13 | 557 | 596 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O76094|SRP72_HUMAN | Signal recognition particle subunit SRP72 OS=Homo sapiens GN=SRP72 PE=1 SV=3 | 20 | 593 | 4.0E-39 |
sp|P33731|SRP72_CANLF | Signal recognition particle subunit SRP72 OS=Canis lupus familiaris GN=SRP72 PE=1 SV=3 | 20 | 593 | 5.0E-38 |
sp|O59787|SRP72_SCHPO | Signal recognition particle subunit srp72 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp72 PE=3 SV=1 | 45 | 614 | 5.0E-27 |
sp|P49965|SRP72_SCHMA | Signal recognition particle subunit SRP72 OS=Schistosoma mansoni GN=SRP72 PE=3 SV=1 | 43 | 301 | 4.0E-19 |
sp|Q54EP7|SRP72_DICDI | Signal recognition particle subunit SRP72 OS=Dictyostelium discoideum GN=srp72 PE=3 SV=1 | 35 | 429 | 8.0E-16 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O76094|SRP72_HUMAN | Signal recognition particle subunit SRP72 OS=Homo sapiens GN=SRP72 PE=1 SV=3 | 20 | 593 | 4.0E-39 |
sp|P33731|SRP72_CANLF | Signal recognition particle subunit SRP72 OS=Canis lupus familiaris GN=SRP72 PE=1 SV=3 | 20 | 593 | 5.0E-38 |
sp|O59787|SRP72_SCHPO | Signal recognition particle subunit srp72 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp72 PE=3 SV=1 | 45 | 614 | 5.0E-27 |
sp|P49965|SRP72_SCHMA | Signal recognition particle subunit SRP72 OS=Schistosoma mansoni GN=SRP72 PE=3 SV=1 | 43 | 301 | 4.0E-19 |
sp|Q54EP7|SRP72_DICDI | Signal recognition particle subunit SRP72 OS=Dictyostelium discoideum GN=srp72 PE=3 SV=1 | 35 | 429 | 8.0E-16 |
sp|P91240|SRP72_CAEEL | Signal recognition particle subunit SRP72 OS=Caenorhabditis elegans GN=srpa-72 PE=3 SV=2 | 9 | 605 | 1.0E-15 |
GO Term | Description | Terminal node |
---|---|---|
GO:0008312 | 7S RNA binding | Yes |
GO:0048500 | signal recognition particle | Yes |
GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | Yes |
GO:1901363 | heterocyclic compound binding | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0090150 | establishment of protein localization to membrane | No |
GO:0003676 | nucleic acid binding | No |
GO:0045184 | establishment of protein localization | No |
GO:0006612 | protein targeting to membrane | No |
GO:0008150 | biological_process | No |
GO:0051641 | cellular localization | No |
GO:0006605 | protein targeting | No |
GO:0051668 | localization within membrane | No |
GO:0070727 | cellular macromolecule localization | No |
GO:0005488 | binding | No |
GO:0045047 | protein targeting to ER | No |
GO:0071705 | nitrogen compound transport | No |
GO:0071702 | organic substance transport | No |
GO:0046907 | intracellular transport | No |
GO:0072657 | protein localization to membrane | No |
GO:0051179 | localization | No |
GO:0070972 | protein localization to endoplasmic reticulum | No |
GO:0015031 | protein transport | No |
GO:0005575 | cellular_component | No |
GO:0003674 | molecular_function | No |
GO:0072599 | establishment of protein localization to endoplasmic reticulum | No |
GO:0006810 | transport | No |
GO:0006613 | cotranslational protein targeting to membrane | No |
GO:0033365 | protein localization to organelle | No |
GO:0006886 | intracellular protein transport | No |
GO:0009987 | cellular process | No |
GO:0072594 | establishment of protein localization to organelle | No |
GO:1990904 | ribonucleoprotein complex | No |
GO:0033036 | macromolecule localization | No |
GO:0008104 | protein localization | No |
GO:0051234 | establishment of localization | No |
GO:0032991 | protein-containing complex | No |
GO:0003723 | RNA binding | No |
GO:0051649 | establishment of localization in cell | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm|Nucleus | Nuclear localization signal | 0.4815 | 0.7693 | 0.0054 | 0.0114 | 0.0756 | 0.0219 | 0.1885 | 0.0073 | 0.1217 | 0.0036 |
Orthofinder run ID | 4 |
Orthogroup | 4836 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1079 MPPDSLGFLSKLLQAATIFDHEEVLRNAIAALQDNQRDNIVQHIQIVALLKLDRFDNALSVIYESGKRLESRCVL EKAYALYKLGRLDEAAFALESHGLGERSLQHVAAQVAYRAERFVKANAIYRLLGGSDAACECNDLSINVSATEAQ TEWQGFSNASTLLLEPLSDTFELCYNMACAHLARGSYKTANKLLQRAAELCNASDDMTEEEKKAESMPIMAQQAY VYTLLGDTEKSIPLYQSLVTSRDTETEAVLVAKNNQSILETEGDEPFLLQRRLAISASPATDFGLFSYQSNMLTF NLSVAEIRAHKTGGVRDRTDRILKQSKQPTTRQDINLLSVVNVAARTRRWCGQKLLRKVVKLSKKYPTNVGFAIT TTQLYLRDKNVEAALSALELLLDCLEISTEEDDRRVRFSPGLTALAISLLRARGREASAKAELLKAATYWRERPL ASAASLVREAYLELVKSSSSAHLAVAASALQRLHEQERSSPLVSTGLVAALAMSDGSRIEGQVLTDLPAVWGLIG DTDVHALAGRGFAMVLACNVTTQRQSDISESTGERVIKKRKRHGKMPKNSVEGMVPDAERWMPLRDRTTYRSRGR KSKKKGADSIQGGVIREEETLELVGGGGVKVEKTPAVGSANKKKKKSRK* |
Coding | >Hirsu2|1079 ATGCCGCCAGATTCGTTGGGGTTCTTGAGCAAACTGCTCCAGGCTGCCACTATATTTGACCACGAAGAGGTTCTC CGTAATGCCATCGCTGCCTTGCAGGACAACCAACGCGACAATATAGTTCAGCATATACAAATCGTTGCCCTGCTG AAGTTAGACCGCTTTGACAACGCTCTTAGCGTCATTTATGAGAGCGGTAAAAGACTTGAGTCCCGTTGTGTTCTC GAAAAAGCCTACGCCCTATATAAATTAGGTAGGCTCGACGAAGCAGCGTTCGCCCTTGAATCGCATGGACTTGGC GAGAGAAGTCTCCAACATGTTGCCGCCCAGGTCGCCTATCGTGCCGAGAGATTCGTCAAGGCAAACGCCATATAT CGCCTTCTTGGTGGTTCCGACGCGGCTTGTGAGTGCAATGACTTGAGCATTAACGTCTCAGCCACCGAGGCCCAG ACGGAATGGCAGGGCTTCTCAAATGCATCGACACTCCTCCTGGAACCATTGTCCGACACGTTCGAGCTGTGTTAC AATATGGCCTGTGCGCATCTCGCCCGTGGCTCTTACAAAACCGCCAATAAACTCCTGCAACGCGCGGCTGAATTG TGTAATGCCTCGGATGACATGACCGAAGAGGAGAAGAAAGCCGAGTCGATGCCCATCATGGCTCAGCAGGCATAC GTCTACACTCTATTGGGGGATACTGAAAAGTCGATTCCTCTGTACCAGTCCTTGGTTACTTCACGCGATACTGAA ACGGAAGCTGTTCTCGTGGCAAAAAACAACCAATCCATCTTGGAGACGGAAGGCGACGAACCCTTTTTGCTGCAG CGCCGGCTCGCCATCTCGGCCTCACCCGCCACCGATTTCGGACTCTTCAGCTACCAGTCCAATATGCTGACATTT AATTTGTCTGTGGCAGAGATTCGGGCGCACAAGACTGGCGGGGTTCGGGACAGGACGGACAGGATCCTGAAGCAA TCCAAACAGCCCACAACCAGACAGGACATCAACCTACTGTCTGTTGTCAACGTCGCTGCTCGGACAAGACGTTGG TGCGGCCAGAAGTTATTGCGCAAAGTGGTCAAATTGTCCAAGAAATACCCCACAAACGTTGGCTTCGCCATCACT ACCACGCAACTCTACTTACGAGACAAAAATGTCGAAGCAGCTCTGTCCGCACTGGAGCTGCTACTTGATTGCCTC GAGATCTCCACCGAAGAAGACGACAGGCGCGTTCGGTTTAGTCCCGGTCTGACTGCCCTAGCGATATCCTTGTTG CGAGCTCGTGGAAGAGAAGCCTCTGCGAAGGCTGAGTTGCTCAAAGCAGCTACCTATTGGAGAGAGAGGCCTCTG GCTTCAGCGGCGTCGCTCGTCAGGGAAGCGTATCTAGAGCTAGTGAAATCATCGAGCTCCGCCCATCTAGCAGTA GCCGCATCTGCCCTTCAAAGGCTTCACGAGCAGGAACGCAGCTCCCCGTTGGTGTCCACTGGGCTAGTAGCAGCC TTGGCTATGTCGGACGGGTCGCGCATTGAGGGCCAAGTTCTCACCGATTTGCCAGCCGTCTGGGGCCTCATCGGC GACACAGACGTTCATGCACTTGCTGGCAGGGGATTTGCAATGGTACTGGCTTGCAATGTTACCACACAGAGGCAA TCTGACATAAGCGAATCAACTGGCGAACGAGTTATTAAGAAGCGGAAGAGACACGGCAAGATGCCCAAGAATTCC GTTGAGGGCATGGTGCCTGATGCGGAGCGATGGATGCCTCTGCGCGACCGTACCACCTATCGGTCTAGGGGCAGA AAGAGTAAGAAGAAAGGGGCTGACTCCATACAGGGAGGGGTCATTAGAGAAGAGGAGACGCTGGAACTGGTCGGA GGAGGTGGTGTCAAGGTGGAGAAAACACCTGCAGTTGGTTCCGCGAACAAGAAAAAGAAGAAGAGCAGGAAGTAG |
Transcript | >Hirsu2|1079 ATGCCGCCAGATTCGTTGGGGTTCTTGAGCAAACTGCTCCAGGCTGCCACTATATTTGACCACGAAGAGGTTCTC CGTAATGCCATCGCTGCCTTGCAGGACAACCAACGCGACAATATAGTTCAGCATATACAAATCGTTGCCCTGCTG AAGTTAGACCGCTTTGACAACGCTCTTAGCGTCATTTATGAGAGCGGTAAAAGACTTGAGTCCCGTTGTGTTCTC GAAAAAGCCTACGCCCTATATAAATTAGGTAGGCTCGACGAAGCAGCGTTCGCCCTTGAATCGCATGGACTTGGC GAGAGAAGTCTCCAACATGTTGCCGCCCAGGTCGCCTATCGTGCCGAGAGATTCGTCAAGGCAAACGCCATATAT CGCCTTCTTGGTGGTTCCGACGCGGCTTGTGAGTGCAATGACTTGAGCATTAACGTCTCAGCCACCGAGGCCCAG ACGGAATGGCAGGGCTTCTCAAATGCATCGACACTCCTCCTGGAACCATTGTCCGACACGTTCGAGCTGTGTTAC AATATGGCCTGTGCGCATCTCGCCCGTGGCTCTTACAAAACCGCCAATAAACTCCTGCAACGCGCGGCTGAATTG TGTAATGCCTCGGATGACATGACCGAAGAGGAGAAGAAAGCCGAGTCGATGCCCATCATGGCTCAGCAGGCATAC GTCTACACTCTATTGGGGGATACTGAAAAGTCGATTCCTCTGTACCAGTCCTTGGTTACTTCACGCGATACTGAA ACGGAAGCTGTTCTCGTGGCAAAAAACAACCAATCCATCTTGGAGACGGAAGGCGACGAACCCTTTTTGCTGCAG CGCCGGCTCGCCATCTCGGCCTCACCCGCCACCGATTTCGGACTCTTCAGCTACCAGTCCAATATGCTGACATTT AATTTGTCTGTGGCAGAGATTCGGGCGCACAAGACTGGCGGGGTTCGGGACAGGACGGACAGGATCCTGAAGCAA TCCAAACAGCCCACAACCAGACAGGACATCAACCTACTGTCTGTTGTCAACGTCGCTGCTCGGACAAGACGTTGG TGCGGCCAGAAGTTATTGCGCAAAGTGGTCAAATTGTCCAAGAAATACCCCACAAACGTTGGCTTCGCCATCACT ACCACGCAACTCTACTTACGAGACAAAAATGTCGAAGCAGCTCTGTCCGCACTGGAGCTGCTACTTGATTGCCTC GAGATCTCCACCGAAGAAGACGACAGGCGCGTTCGGTTTAGTCCCGGTCTGACTGCCCTAGCGATATCCTTGTTG CGAGCTCGTGGAAGAGAAGCCTCTGCGAAGGCTGAGTTGCTCAAAGCAGCTACCTATTGGAGAGAGAGGCCTCTG GCTTCAGCGGCGTCGCTCGTCAGGGAAGCGTATCTAGAGCTAGTGAAATCATCGAGCTCCGCCCATCTAGCAGTA GCCGCATCTGCCCTTCAAAGGCTTCACGAGCAGGAACGCAGCTCCCCGTTGGTGTCCACTGGGCTAGTAGCAGCC TTGGCTATGTCGGACGGGTCGCGCATTGAGGGCCAAGTTCTCACCGATTTGCCAGCCGTCTGGGGCCTCATCGGC GACACAGACGTTCATGCACTTGCTGGCAGGGGATTTGCAATGGTACTGGCTTGCAATGTTACCACACAGAGGCAA TCTGACATAAGCGAATCAACTGGCGAACGAGTTATTAAGAAGCGGAAGAGACACGGCAAGATGCCCAAGAATTCC GTTGAGGGCATGGTGCCTGATGCGGAGCGATGGATGCCTCTGCGCGACCGTACCACCTATCGGTCTAGGGGCAGA AAGAGTAAGAAGAAAGGGGCTGACTCCATACAGGGAGGGGTCATTAGAGAAGAGGAGACGCTGGAACTGGTCGGA GGAGGTGGTGTCAAGGTGGAGAAAACACCTGCAGTTGGTTCCGCGAACAAGAAAAAGAAGAAGAGCAGGAAGTAG |
Gene | >Hirsu2|1079 ATGCCGCCAGATTCGTTGGGGTTCTTGAGCAAACTGCTCCAGGCTGCCACTATATTTGACCACGAAGAGGTTCTC CGTAATGCCATCGCTGCCTTGCAGGACAACCAACGCGACAATATAGTTCAGCATATACAAATCGTTGCCCTGCTG AAGTTAGACCGCTTTGACAACGCTCTTAGCGTCATTTATGAGAGCGGTAAAAGACTTGAGTCCCGTTGTGTTCTC GAAAAAGCCTACGCCCTATATAAATTAGGTAGGCTCGACGAAGCAGCGTTCGCCCTTGAATCGCATGGACTTGGC GAGAGAAGTCTCCAACATGTTGCCGCCCAGGTCGCCTATCGTGCCGAGAGATTCGTCAAGGCAAACGCCATATAT CGCCTTCTTGGTGGTTCCGACGCGGCTTGTGAGTGCAATGACTTGAGCATTAACGTCTCAGCCACCGAGGCCCAG ACGGAATGGCAGGGCTTCTCAAATGCATCGACACTCCTCCTGGAACCATTGTCCGACACGTTCGAGCTGTGTTAC AATATGGCCTGTGCGCATCTCGCCCGTGGCTCTTACAAAACCGCCAATAAACTCCTGCAACGCGCGGCTGAATTG TGTAATGCCTCGGATGACATGACCGAAGAGGAGAAGAAAGCCGAGTCGATGCCCATCATGGCTCAGCAGGCATAC GTCTACACTCTATTGGGGGATACTGAAAAGTCGATTCCTCTGTACCAGTCCTTGGTTACTTCACGGTGAGCCGAC AGACCTCTGCCAGAATCTGTCGATCCACGTGGAGATATGTGATGTCAGATGTCGCTTGCGGACAAATCGTTGGAA TGTCCCCGGATTTTTGTACTCAGGCTGACCACAGAAACCGCTCAGCGATACTGAAACGGAAGCTGTTCTCGTGGC AAAAAACAACCAATCCATCTTGGAGACGGAAGGCGACGAACCCTTTTTGCTGCAGCGCCGGCTCGCCATCTCGGC CTCACCCGCCACCGATTTCGGACTCTTCAGCTACCAGTCCAATATGCTGACATTTAATTTGTCTGTGGCAGAGAT TCGGGCGCACAAGACTGGCGGGGTTCGGGACAGGACGGACAGGATCCTGAAGCAATCCAAACAGCCCACAACCAG ACAGGACATCAACCTACTGTCTGTTGTCAACGTCGCTGCTCGGACAAGACGTTGGTGCGGCCAGAAGTTATTGCG CAAAGTGGTCAAATTGTCCAAGAAATACCCCACAAACGTTGGCTTCGCCATCACTACCACGCAACTCTACTTACG AGACAAAAATGTCGAAGCAGCTCTGTCCGCACTGGAGCTGCTACTTGATTGCCTCGAGATCTCCACCGAAGAAGA CGACAGGCGCGTTCGGTTTAGTCCCGGTCTGACTGCCCTAGCGATATCCTTGTTGCGAGCTCGTGGAAGAGAAGC CTCTGCGAAGGCTGAGTTGCTCAAAGCAGCTACCTATTGGAGAGAGAGGCCTCTGGCTTCAGCGGCGTCGCTCGT CAGGGAAGCGTATCTAGAGCTAGTGAAATCATCGAGCTCCGCCCATCTAGCAGTAGCCGCATCTGCCCTTCAAAG GCTTCACGAGCAGGAACGCAGCTCCCCGTTGGTGTCCACTGGGCTAGTAGCAGCCTTGGCTATGTCGGACGGGTC GCGCATTGAGGGCCAAGTTCTCACCGATTTGCCAGCCGTCTGGGGCCTCATCGGCGACACAGACGTTCATGCACT TGCTGGCAGGGGATTTGCAATGGTACTGGCTTGCAATGTTACCACACAGAGGCAATCTGACATAAGCGAATCAAC TGGCGAACGAGTTATTAAGAAGCGGAAGAGACACGGCAAGATGCCCAAGAATTCCGTTGAGGGCATGGTGCCTGA TGCGGAGCGATGGATGCCTCTGCGCGACCGTACCACCTATCGGTCTAGGGGCAGAAAGAGTAAGAAGAAAGGGGC TGACTCCATACAGGGAGGGGTCATTAGAGAAGAGGAGACGCTGGAACTGGTCGGAGGAGGTGGTGTCAAGGTGGA GAAAACACCTGCAGTTGGTTCCGCGAACAAGAAAAAGAAGAAGAGCAGGAAGTAG |