Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|10776
Gene name
LocationContig_90:25624..26668
Strand-
Gene length (bp)1044
Transcript length (bp)990
Coding sequence length (bp)990
Protein length (aa) 330

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.8E-13 35 104

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2 PE=2 SV=1 1 122 8.0E-41
sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1 SV=2 1 122 4.0E-40
sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1 SV=1 1 122 7.0E-40
sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana GN=At3g47120 PE=2 SV=1 1 118 9.0E-40
sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica GN=Os03g0826400 PE=2 SV=1 1 109 2.0E-38
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Swissprot ID Swissprot Description Start End E-value
sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2 PE=2 SV=1 1 122 8.0E-41
sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1 SV=2 1 122 4.0E-40
sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1 SV=1 1 122 7.0E-40
sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana GN=At3g47120 PE=2 SV=1 1 118 9.0E-40
sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica GN=Os03g0826400 PE=2 SV=1 1 109 2.0E-38
sp|O94290|IST3_SCHPO U2 snRNP component ist3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf29 PE=1 SV=1 1 113 8.0E-38
sp|P40565|IST3_YEAST U2 snRNP component IST3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IST3 PE=1 SV=1 1 114 1.0E-36
sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2 SV=1 35 169 1.0E-10
sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1 SV=2 35 169 2.0E-10
sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2 SV=1 35 169 3.0E-10
sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1 SV=1 35 169 3.0E-10
sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1 35 110 5.0E-10
sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1 20 110 7.0E-10
sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpE PE=3 SV=3 35 110 8.0E-10
sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1 10 106 5.0E-09
sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2 10 106 6.0E-09
sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2 35 109 7.0E-09
sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rbpA PE=3 SV=3 35 110 8.0E-09
sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1 35 107 1.0E-08
sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8 PE=1 SV=1 35 110 2.0E-08
sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1 35 109 2.0E-08
sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1 20 110 3.0E-08
sp|O22703|RZ1B_ARATH Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana GN=RZ1B PE=2 SV=1 35 139 3.0E-08
sp|Q9FGS0|CP31B_ARATH RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 SV=1 31 114 5.0E-08
sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1 10 106 5.0E-08
sp|P25299|RNA15_YEAST mRNA 3'-end-processing protein RNA15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNA15 PE=1 SV=1 35 109 7.0E-08
sp|Q9LIN3|RZ1A_ARATH Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1 35 110 9.0E-08
sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1 35 110 1.0E-07
sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana GN=cirbp PE=2 SV=1 35 109 1.0E-07
sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1 SV=1 1 110 1.0E-07
sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2 10 106 1.0E-07
sp|Q3SZM1|MK67I_BOVIN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus GN=NIFK PE=2 SV=1 35 106 1.0E-07
sp|Q9FMG4|SC35_ARATH Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana GN=SC35 PE=1 SV=1 24 111 2.0E-07
sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1 35 109 2.0E-07
sp|Q8RWN5|RZ1C_ARATH Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana GN=RZ1C PE=1 SV=1 35 116 2.0E-07
sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1 35 109 2.0E-07
sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1 10 106 2.0E-07
sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1 35 109 2.0E-07
sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1 35 110 4.0E-07
sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=3 SV=2 10 106 4.0E-07
sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1 35 110 4.0E-07
sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Xenopus laevis GN=zcrb1 PE=2 SV=1 35 166 4.0E-07
sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1 35 109 5.0E-07
sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1 35 110 5.0E-07
sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1 35 109 5.0E-07
sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1 35 109 5.0E-07
sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2 35 106 6.0E-07
sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25G10.01 PE=1 SV=1 35 110 7.0E-07
sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1 35 106 7.0E-07
sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1 35 109 7.0E-07
sp|Q04836|CP31A_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1 35 109 8.0E-07
sp|P98179|RBM3_HUMAN RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1 35 114 9.0E-07
sp|Q44556|RBPD_NOSS1 Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpD PE=3 SV=3 35 110 9.0E-07
sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens GN=ZCRB1 PE=1 SV=2 35 109 9.0E-07
sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1 35 109 1.0E-06
sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1 20 114 1.0E-06
sp|Q9P6P7|YKCG_SCHPO Uncharacterized RNA-binding protein C644.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.16 PE=3 SV=1 31 108 1.0E-06
sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2 35 109 1.0E-06
sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2 35 109 1.0E-06
sp|Q4G338|PPIE_HAECO Peptidyl-prolyl cis-trans isomerase E OS=Haemonchus contortus PE=1 SV=1 35 110 2.0E-06
sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1 35 109 5.0E-06
sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=3 SV=1 32 113 5.0E-06
sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=1 SV=1 40 133 8.0E-06
sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1 40 133 8.0E-06
sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1 40 133 8.0E-06
sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2 40 133 8.0E-06
sp|Q9M9G6|CTF64_ARATH Cleavage stimulating factor 64 OS=Arabidopsis thaliana GN=CSTF64 PE=1 SV=1 35 109 9.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.1689 0.9331 0.0398 0.0554 0.066 0.0026 0.0656 0.005 0.0056 0.003

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup1361
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|3888
Ophiocordyceps australis map64 (Brazil) OphauB2|1
Ophiocordyceps camponoti-floridani Ophcf2|03837
Ophiocordyceps camponoti-rufipedis Ophun1|3687
Ophiocordyceps kimflemingae Ophio5|1869
Ophiocordyceps subramaniannii Hirsu2|10776 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|10776
MNKIRAIQALNQKEIEQGVSPDASWHTDYRDTAFVYFGGLPFDLSEGDVITIFSQFGEPVFLKLARDKETGKSRG
FGWLKYEDQRSTDLAVDNLGGAHVGGRLISVDHARYKARDDEDPDEFGVGWEDMRRREGHAASDDDDEASSGGDE
AAAAGRRPRELAEERELAALVREHDDDDPMKAFLIEEKKKEVDEARRKAERRERRHKHRHQRSHRHRRDDDDGHG
DDGARRRDRSPSSGRETRHRDRDHGKHGARSDSRHGERRRRRYRDDMSDEDEGGRGGRGRREEDAQAGHRREEPD
DRRRERYRHDHDRRSRRTSTSRSPRRRRD*
Coding >Hirsu2|10776
ATGAACAAGATCCGCGCCATCCAAGCGCTCAACCAGAAGGAGATCGAGCAAGGCGTCTCCCCGGACGCCTCGTGG
CACACCGACTACCGAGACACGGCCTTCGTCTACTTCGGCGGCCTGCCGTTCGACCTGTCCGAGGGCGACGTCATC
ACCATCTTCTCGCAGTTCGGCGAGCCCGTCTTCCTCAAGCTCGCGCGCGACAAGGAGACGGGCAAGTCGCGCGGC
TTCGGCTGGCTCAAGTACGAGGACCAGCGCAGCACCGACCTCGCCGTCGACAACCTGGGCGGCGCCCACGTCGGC
GGCCGCCTCATCAGTGTCGACCACGCCCGCTACAAGGCCCGCGATGACGAGGACCCGGATGAGTTCGGGGTCGGC
TGGGAGGACATGCGCCGCCGCGAGGGCCACGCCGCTTCCGACGACGACGACGAGGCCAGCAGCGGCGGCGACGAG
GCCGCCGCGGCGGGCCGGCGGCCGCGCGAGCTGGCCGAGGAGCGCGAGCTGGCCGCGCTCGTGCGCGAGCACGAC
GACGACGACCCCATGAAGGCCTTCCTCATCGAGGAGAAGAAGAAGGAGGTCGACGAGGCCAGGCGCAAGGCCGAG
AGGAGGGAGAGGAGGCACAAGCACCGACACCAGCGATCGCACAGGCACCGGCGTGACGACGACGACGGCCACGGC
GACGACGGGGCCCGCCGCAGGGACCGCTCGCCTTCCTCCGGGCGCGAGACACGGCACAGGGACCGAGACCACGGG
AAGCACGGCGCTCGCAGTGACTCTAGACATGGCGAGCGGCGGCGGCGGCGGTATCGCGACGACATGTCTGACGAA
GACGAGGGCGGTCGAGGCGGACGCGGGCGCAGAGAGGAAGACGCGCAGGCCGGGCACAGGAGAGAGGAGCCTGAT
GACCGCCGCCGCGAAAGATACCGGCACGACCACGACAGAAGATCTAGACGGACGAGCACAAGTCGTTCGCCGCGA
CGGCGTCGAGACTGA
Transcript >Hirsu2|10776
ATGAACAAGATCCGCGCCATCCAAGCGCTCAACCAGAAGGAGATCGAGCAAGGCGTCTCCCCGGACGCCTCGTGG
CACACCGACTACCGAGACACGGCCTTCGTCTACTTCGGCGGCCTGCCGTTCGACCTGTCCGAGGGCGACGTCATC
ACCATCTTCTCGCAGTTCGGCGAGCCCGTCTTCCTCAAGCTCGCGCGCGACAAGGAGACGGGCAAGTCGCGCGGC
TTCGGCTGGCTCAAGTACGAGGACCAGCGCAGCACCGACCTCGCCGTCGACAACCTGGGCGGCGCCCACGTCGGC
GGCCGCCTCATCAGTGTCGACCACGCCCGCTACAAGGCCCGCGATGACGAGGACCCGGATGAGTTCGGGGTCGGC
TGGGAGGACATGCGCCGCCGCGAGGGCCACGCCGCTTCCGACGACGACGACGAGGCCAGCAGCGGCGGCGACGAG
GCCGCCGCGGCGGGCCGGCGGCCGCGCGAGCTGGCCGAGGAGCGCGAGCTGGCCGCGCTCGTGCGCGAGCACGAC
GACGACGACCCCATGAAGGCCTTCCTCATCGAGGAGAAGAAGAAGGAGGTCGACGAGGCCAGGCGCAAGGCCGAG
AGGAGGGAGAGGAGGCACAAGCACCGACACCAGCGATCGCACAGGCACCGGCGTGACGACGACGACGGCCACGGC
GACGACGGGGCCCGCCGCAGGGACCGCTCGCCTTCCTCCGGGCGCGAGACACGGCACAGGGACCGAGACCACGGG
AAGCACGGCGCTCGCAGTGACTCTAGACATGGCGAGCGGCGGCGGCGGCGGTATCGCGACGACATGTCTGACGAA
GACGAGGGCGGTCGAGGCGGACGCGGGCGCAGAGAGGAAGACGCGCAGGCCGGGCACAGGAGAGAGGAGCCTGAT
GACCGCCGCCGCGAAAGATACCGGCACGACCACGACAGAAGATCTAGACGGACGAGCACAAGTCGTTCGCCGCGA
CGGCGTCGAGACTGA
Gene >Hirsu2|10776
ATGAACAAGATCCGCGCCATCCAAGCGCTCAACCAGAAGGAGATCGAGCAAGGCGTGTAAGCAGCCACCTCCGGC
CGCCCGACATGGCGCTCACTGACGCGCCGACGCAGCTCCCCGGACGCCTCGTGGCACACCGACTACCGAGACACG
GCCTTCGTCTACTTCGGCGGCCTGCCGTTCGACCTGTCCGAGGGCGACGTCATCACCATCTTCTCGCAGTTCGGC
GAGCCCGTCTTCCTCAAGCTCGCGCGCGACAAGGAGACGGGCAAGTCGCGCGGCTTCGGCTGGCTCAAGTACGAG
GACCAGCGCAGCACCGACCTCGCCGTCGACAACCTGGGCGGCGCCCACGTCGGCGGCCGCCTCATCAGTGTCGAC
CACGCCCGCTACAAGGCCCGCGATGACGAGGACCCGGATGAGTTCGGGGTCGGCTGGGAGGACATGCGCCGCCGC
GAGGGCCACGCCGCTTCCGACGACGACGACGAGGCCAGCAGCGGCGGCGACGAGGCCGCCGCGGCGGGCCGGCGG
CCGCGCGAGCTGGCCGAGGAGCGCGAGCTGGCCGCGCTCGTGCGCGAGCACGACGACGACGACCCCATGAAGGCC
TTCCTCATCGAGGAGAAGAAGAAGGAGGTCGACGAGGCCAGGCGCAAGGCCGAGAGGAGGGAGAGGAGGCACAAG
CACCGACACCAGCGATCGCACAGGCACCGGCGTGACGACGACGACGGCCACGGCGACGACGGGGCCCGCCGCAGG
GACCGCTCGCCTTCCTCCGGGCGCGAGACACGGCACAGGGACCGAGACCACGGGAAGCACGGCGCTCGCAGTGAC
TCTAGACATGGCGAGCGGCGGCGGCGGCGGTATCGCGACGACATGTCTGACGAAGACGAGGGCGGTCGAGGCGGA
CGCGGGCGCAGAGAGGAAGACGCGCAGGCCGGGCACAGGAGAGAGGAGCCTGATGACCGCCGCCGCGAAAGATAC
CGGCACGACCACGACAGAAGATCTAGACGGACGAGCACAAGTCGTTCGCCGCGACGGCGTCGAGACTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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