Protein ID | Hirsu2|1077 |
Gene name | |
Location | Contig_1222:3549..4662 |
Strand | - |
Gene length (bp) | 1113 |
Transcript length (bp) | 1113 |
Coding sequence length (bp) | 1113 |
Protein length (aa) | 371 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04433 | SWIRM | SWIRM domain | 4.7E-13 | 290 | 362 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P28003|FUN19_YEAST | SWIRM domain-containing protein FUN19 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FUN19 PE=1 SV=3 | 253 | 370 | 4.0E-32 |
sp|Q99326|YO338_YEAST | SWIRM domain-containing protein YOR338W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR338W PE=1 SV=1 | 253 | 361 | 7.0E-32 |
sp|O13719|LAF1_SCHPO | SWIRM domain-containing protein laf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=laf1 PE=1 SV=1 | 145 | 362 | 3.0E-31 |
sp|O74443|LAF2_SCHPO | SWIRM domain-containing protein laf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=laf2 PE=1 SV=1 | 253 | 362 | 5.0E-30 |
sp|Q59WH0|ADA2_CANAL | Transcriptional adapter 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ADA2 PE=3 SV=1 | 281 | 360 | 2.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0003674 | molecular_function | No |
GO:0005488 | binding | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.3505 | 0.8894 | 0.0136 | 0.0453 | 0.1074 | 0.0081 | 0.0204 | 0.0301 | 0.0211 | 0.0061 |
Orthofinder run ID | 4 |
Orthogroup | 1357 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1077 MEAKKLDINSLMSPPDALIDSFAHHHHHHAMSSGKGTGTGKAGDADFCPASSAQHPLPMSPPVSPYSKPATTSTS PPSSQQTAVVVKDPVLYPVDDHSPSSPMQQPLFAPAELEHRRIVDEHVRARPQSIFAGLAPPRREDYELVLTFRS QVMRHFTADRKAWLRKERALLEADRRAGAQRYHAIMPAKPVVAKSARSSRAERVTKGQGAPRQIRNHAAATGPAR PARPAGRVSATPEPSRRIVAPNREDKDFEALPNYCPPTASLPNRPNSLKVDWKGQPIDLSNDANAHLLHPDEVTL AGNLRLDCATYLTSKRRIFDRRLQCLRMGKEFRKTDAQQACKIDVNKASKLWTAFEKVGWLDASWMRDFV* |
Coding | >Hirsu2|1077 ATGGAAGCCAAGAAGCTCGACATCAACAGCCTCATGTCCCCCCCCGACGCACTCATCGACAGCTTCGCCCACCAC CACCACCACCACGCCATGAGCAGCGGCAAGGGCACGGGCACGGGCAAGGCGGGCGACGCCGACTTCTGCCCGGCG TCGTCGGCCCAGCACCCGCTGCCCATGTCGCCGCCCGTCTCGCCCTACAGCAAGCCGGCAACGACGTCGACGTCG CCGCCGTCGAGCCAGCAGACGGCCGTCGTCGTCAAGGACCCGGTCCTGTACCCCGTCGACGACCACTCGCCGTCG AGCCCGATGCAGCAGCCGCTCTTCGCCCCGGCCGAGCTCGAGCACCGGCGCATCGTCGACGAGCACGTGCGGGCG CGGCCGCAGAGCATCTTCGCCGGCCTCGCACCCCCCCGACGCGAGGACTACGAGCTCGTCCTCACCTTCCGGTCG CAGGTGATGAGGCACTTCACCGCCGACCGCAAGGCCTGGCTGCGCAAGGAGCGGGCTCTCCTCGAGGCAGACAGG CGGGCCGGCGCCCAGCGATACCATGCCATCATGCCGGCCAAGCCCGTTGTGGCCAAGTCCGCCCGGTCGTCGCGT GCCGAGCGAGTGACCAAGGGCCAGGGTGCCCCACGGCAGATCCGCAACCATGCCGCAGCCACGGGGCCTGCGAGA CCAGCGAGACCCGCCGGCCGTGTTAGCGCCACGCCCGAGCCGTCGCGGCGGATCGTCGCGCCCAATCGCGAGGAC AAGGACTTCGAGGCGCTGCCCAACTACTGCCCGCCCACGGCCTCGCTCCCCAACCGCCCCAACAGCCTCAAGGTG GACTGGAAGGGCCAGCCGATCGACCTGAGCAACGACGCCAACGCCCACCTGCTGCACCCGGACGAGGTGACGCTG GCCGGCAACCTCCGCCTCGACTGCGCCACGTACCTGACGAGCAAGCGGCGCATCTTCGACCGCCGCCTTCAGTGC CTCCGCATGGGCAAGGAGTTCCGCAAGACGGACGCACAGCAGGCGTGCAAGATTGACGTCAACAAGGCCTCGAAG CTGTGGACAGCCTTTGAGAAGGTGGGCTGGCTCGACGCCAGCTGGATGCGCGACTTTGTCTGA |
Transcript | >Hirsu2|1077 ATGGAAGCCAAGAAGCTCGACATCAACAGCCTCATGTCCCCCCCCGACGCACTCATCGACAGCTTCGCCCACCAC CACCACCACCACGCCATGAGCAGCGGCAAGGGCACGGGCACGGGCAAGGCGGGCGACGCCGACTTCTGCCCGGCG TCGTCGGCCCAGCACCCGCTGCCCATGTCGCCGCCCGTCTCGCCCTACAGCAAGCCGGCAACGACGTCGACGTCG CCGCCGTCGAGCCAGCAGACGGCCGTCGTCGTCAAGGACCCGGTCCTGTACCCCGTCGACGACCACTCGCCGTCG AGCCCGATGCAGCAGCCGCTCTTCGCCCCGGCCGAGCTCGAGCACCGGCGCATCGTCGACGAGCACGTGCGGGCG CGGCCGCAGAGCATCTTCGCCGGCCTCGCACCCCCCCGACGCGAGGACTACGAGCTCGTCCTCACCTTCCGGTCG CAGGTGATGAGGCACTTCACCGCCGACCGCAAGGCCTGGCTGCGCAAGGAGCGGGCTCTCCTCGAGGCAGACAGG CGGGCCGGCGCCCAGCGATACCATGCCATCATGCCGGCCAAGCCCGTTGTGGCCAAGTCCGCCCGGTCGTCGCGT GCCGAGCGAGTGACCAAGGGCCAGGGTGCCCCACGGCAGATCCGCAACCATGCCGCAGCCACGGGGCCTGCGAGA CCAGCGAGACCCGCCGGCCGTGTTAGCGCCACGCCCGAGCCGTCGCGGCGGATCGTCGCGCCCAATCGCGAGGAC AAGGACTTCGAGGCGCTGCCCAACTACTGCCCGCCCACGGCCTCGCTCCCCAACCGCCCCAACAGCCTCAAGGTG GACTGGAAGGGCCAGCCGATCGACCTGAGCAACGACGCCAACGCCCACCTGCTGCACCCGGACGAGGTGACGCTG GCCGGCAACCTCCGCCTCGACTGCGCCACGTACCTGACGAGCAAGCGGCGCATCTTCGACCGCCGCCTTCAGTGC CTCCGCATGGGCAAGGAGTTCCGCAAGACGGACGCACAGCAGGCGTGCAAGATTGACGTCAACAAGGCCTCGAAG CTGTGGACAGCCTTTGAGAAGGTGGGCTGGCTCGACGCCAGCTGGATGCGCGACTTTGTCTGA |
Gene | >Hirsu2|1077 ATGGAAGCCAAGAAGCTCGACATCAACAGCCTCATGTCCCCCCCCGACGCACTCATCGACAGCTTCGCCCACCAC CACCACCACCACGCCATGAGCAGCGGCAAGGGCACGGGCACGGGCAAGGCGGGCGACGCCGACTTCTGCCCGGCG TCGTCGGCCCAGCACCCGCTGCCCATGTCGCCGCCCGTCTCGCCCTACAGCAAGCCGGCAACGACGTCGACGTCG CCGCCGTCGAGCCAGCAGACGGCCGTCGTCGTCAAGGACCCGGTCCTGTACCCCGTCGACGACCACTCGCCGTCG AGCCCGATGCAGCAGCCGCTCTTCGCCCCGGCCGAGCTCGAGCACCGGCGCATCGTCGACGAGCACGTGCGGGCG CGGCCGCAGAGCATCTTCGCCGGCCTCGCACCCCCCCGACGCGAGGACTACGAGCTCGTCCTCACCTTCCGGTCG CAGGTGATGAGGCACTTCACCGCCGACCGCAAGGCCTGGCTGCGCAAGGAGCGGGCTCTCCTCGAGGCAGACAGG CGGGCCGGCGCCCAGCGATACCATGCCATCATGCCGGCCAAGCCCGTTGTGGCCAAGTCCGCCCGGTCGTCGCGT GCCGAGCGAGTGACCAAGGGCCAGGGTGCCCCACGGCAGATCCGCAACCATGCCGCAGCCACGGGGCCTGCGAGA CCAGCGAGACCCGCCGGCCGTGTTAGCGCCACGCCCGAGCCGTCGCGGCGGATCGTCGCGCCCAATCGCGAGGAC AAGGACTTCGAGGCGCTGCCCAACTACTGCCCGCCCACGGCCTCGCTCCCCAACCGCCCCAACAGCCTCAAGGTG GACTGGAAGGGCCAGCCGATCGACCTGAGCAACGACGCCAACGCCCACCTGCTGCACCCGGACGAGGTGACGCTG GCCGGCAACCTCCGCCTCGACTGCGCCACGTACCTGACGAGCAAGCGGCGCATCTTCGACCGCCGCCTTCAGTGC CTCCGCATGGGCAAGGAGTTCCGCAAGACGGACGCACAGCAGGCGTGCAAGATTGACGTCAACAAGGCCTCGAAG CTGTGGACAGCCTTTGAGAAGGTGGGCTGGCTCGACGCCAGCTGGATGCGCGACTTTGTCTGA |