Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|1077
Gene name
Location	Contig_1222:3549..4662
Strand	-
Gene length (bp)	1113
Transcript length (bp)	1113
Coding sequence length (bp)	1113
Protein length (aa)	371

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04433	SWIRM	SWIRM domain	4.7E-13	290	362

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P28003\|FUN19_YEAST	SWIRM domain-containing protein FUN19 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FUN19 PE=1 SV=3	253	370	4.0E-32
sp\|Q99326\|YO338_YEAST	SWIRM domain-containing protein YOR338W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR338W PE=1 SV=1	253	361	7.0E-32
sp\|O13719\|LAF1_SCHPO	SWIRM domain-containing protein laf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=laf1 PE=1 SV=1	145	362	3.0E-31
sp\|O74443\|LAF2_SCHPO	SWIRM domain-containing protein laf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=laf2 PE=1 SV=1	253	362	5.0E-30
sp\|Q59WH0\|ADA2_CANAL	Transcriptional adapter 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ADA2 PE=3 SV=1	281	360	2.0E-06

GO

GO Term	Description	Terminal node
GO:0005515	protein binding	Yes
GO:0003674	molecular_function	No
GO:0005488	binding	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|1077 MEAKKLDINSLMSPPDALIDSFAHHHHHHAMSSGKGTGTGKAGDADFCPASSAQHPLPMSPPVSPYSKPATTSTS PPSSQQTAVVVKDPVLYPVDDHSPSSPMQQPLFAPAELEHRRIVDEHVRARPQSIFAGLAPPRREDYELVLTFRS QVMRHFTADRKAWLRKERALLEADRRAGAQRYHAIMPAKPVVAKSARSSRAERVTKGQGAPRQIRNHAAATGPAR PARPAGRVSATPEPSRRIVAPNREDKDFEALPNYCPPTASLPNRPNSLKVDWKGQPIDLSNDANAHLLHPDEVTL AGNLRLDCATYLTSKRRIFDRRLQCLRMGKEFRKTDAQQACKIDVNKASKLWTAFEKVGWLDASWMRDFV*
Coding	>Hirsu2\|1077 ATGGAAGCCAAGAAGCTCGACATCAACAGCCTCATGTCCCCCCCCGACGCACTCATCGACAGCTTCGCCCACCAC CACCACCACCACGCCATGAGCAGCGGCAAGGGCACGGGCACGGGCAAGGCGGGCGACGCCGACTTCTGCCCGGCG TCGTCGGCCCAGCACCCGCTGCCCATGTCGCCGCCCGTCTCGCCCTACAGCAAGCCGGCAACGACGTCGACGTCG CCGCCGTCGAGCCAGCAGACGGCCGTCGTCGTCAAGGACCCGGTCCTGTACCCCGTCGACGACCACTCGCCGTCG AGCCCGATGCAGCAGCCGCTCTTCGCCCCGGCCGAGCTCGAGCACCGGCGCATCGTCGACGAGCACGTGCGGGCG CGGCCGCAGAGCATCTTCGCCGGCCTCGCACCCCCCCGACGCGAGGACTACGAGCTCGTCCTCACCTTCCGGTCG CAGGTGATGAGGCACTTCACCGCCGACCGCAAGGCCTGGCTGCGCAAGGAGCGGGCTCTCCTCGAGGCAGACAGG CGGGCCGGCGCCCAGCGATACCATGCCATCATGCCGGCCAAGCCCGTTGTGGCCAAGTCCGCCCGGTCGTCGCGT GCCGAGCGAGTGACCAAGGGCCAGGGTGCCCCACGGCAGATCCGCAACCATGCCGCAGCCACGGGGCCTGCGAGA CCAGCGAGACCCGCCGGCCGTGTTAGCGCCACGCCCGAGCCGTCGCGGCGGATCGTCGCGCCCAATCGCGAGGAC AAGGACTTCGAGGCGCTGCCCAACTACTGCCCGCCCACGGCCTCGCTCCCCAACCGCCCCAACAGCCTCAAGGTG GACTGGAAGGGCCAGCCGATCGACCTGAGCAACGACGCCAACGCCCACCTGCTGCACCCGGACGAGGTGACGCTG GCCGGCAACCTCCGCCTCGACTGCGCCACGTACCTGACGAGCAAGCGGCGCATCTTCGACCGCCGCCTTCAGTGC CTCCGCATGGGCAAGGAGTTCCGCAAGACGGACGCACAGCAGGCGTGCAAGATTGACGTCAACAAGGCCTCGAAG CTGTGGACAGCCTTTGAGAAGGTGGGCTGGCTCGACGCCAGCTGGATGCGCGACTTTGTCTGA
Transcript	>Hirsu2\|1077 ATGGAAGCCAAGAAGCTCGACATCAACAGCCTCATGTCCCCCCCCGACGCACTCATCGACAGCTTCGCCCACCAC CACCACCACCACGCCATGAGCAGCGGCAAGGGCACGGGCACGGGCAAGGCGGGCGACGCCGACTTCTGCCCGGCG TCGTCGGCCCAGCACCCGCTGCCCATGTCGCCGCCCGTCTCGCCCTACAGCAAGCCGGCAACGACGTCGACGTCG CCGCCGTCGAGCCAGCAGACGGCCGTCGTCGTCAAGGACCCGGTCCTGTACCCCGTCGACGACCACTCGCCGTCG AGCCCGATGCAGCAGCCGCTCTTCGCCCCGGCCGAGCTCGAGCACCGGCGCATCGTCGACGAGCACGTGCGGGCG CGGCCGCAGAGCATCTTCGCCGGCCTCGCACCCCCCCGACGCGAGGACTACGAGCTCGTCCTCACCTTCCGGTCG CAGGTGATGAGGCACTTCACCGCCGACCGCAAGGCCTGGCTGCGCAAGGAGCGGGCTCTCCTCGAGGCAGACAGG CGGGCCGGCGCCCAGCGATACCATGCCATCATGCCGGCCAAGCCCGTTGTGGCCAAGTCCGCCCGGTCGTCGCGT GCCGAGCGAGTGACCAAGGGCCAGGGTGCCCCACGGCAGATCCGCAACCATGCCGCAGCCACGGGGCCTGCGAGA CCAGCGAGACCCGCCGGCCGTGTTAGCGCCACGCCCGAGCCGTCGCGGCGGATCGTCGCGCCCAATCGCGAGGAC AAGGACTTCGAGGCGCTGCCCAACTACTGCCCGCCCACGGCCTCGCTCCCCAACCGCCCCAACAGCCTCAAGGTG GACTGGAAGGGCCAGCCGATCGACCTGAGCAACGACGCCAACGCCCACCTGCTGCACCCGGACGAGGTGACGCTG GCCGGCAACCTCCGCCTCGACTGCGCCACGTACCTGACGAGCAAGCGGCGCATCTTCGACCGCCGCCTTCAGTGC CTCCGCATGGGCAAGGAGTTCCGCAAGACGGACGCACAGCAGGCGTGCAAGATTGACGTCAACAAGGCCTCGAAG CTGTGGACAGCCTTTGAGAAGGTGGGCTGGCTCGACGCCAGCTGGATGCGCGACTTTGTCTGA
Gene	>Hirsu2\|1077 ATGGAAGCCAAGAAGCTCGACATCAACAGCCTCATGTCCCCCCCCGACGCACTCATCGACAGCTTCGCCCACCAC CACCACCACCACGCCATGAGCAGCGGCAAGGGCACGGGCACGGGCAAGGCGGGCGACGCCGACTTCTGCCCGGCG TCGTCGGCCCAGCACCCGCTGCCCATGTCGCCGCCCGTCTCGCCCTACAGCAAGCCGGCAACGACGTCGACGTCG CCGCCGTCGAGCCAGCAGACGGCCGTCGTCGTCAAGGACCCGGTCCTGTACCCCGTCGACGACCACTCGCCGTCG AGCCCGATGCAGCAGCCGCTCTTCGCCCCGGCCGAGCTCGAGCACCGGCGCATCGTCGACGAGCACGTGCGGGCG CGGCCGCAGAGCATCTTCGCCGGCCTCGCACCCCCCCGACGCGAGGACTACGAGCTCGTCCTCACCTTCCGGTCG CAGGTGATGAGGCACTTCACCGCCGACCGCAAGGCCTGGCTGCGCAAGGAGCGGGCTCTCCTCGAGGCAGACAGG CGGGCCGGCGCCCAGCGATACCATGCCATCATGCCGGCCAAGCCCGTTGTGGCCAAGTCCGCCCGGTCGTCGCGT GCCGAGCGAGTGACCAAGGGCCAGGGTGCCCCACGGCAGATCCGCAACCATGCCGCAGCCACGGGGCCTGCGAGA CCAGCGAGACCCGCCGGCCGTGTTAGCGCCACGCCCGAGCCGTCGCGGCGGATCGTCGCGCCCAATCGCGAGGAC AAGGACTTCGAGGCGCTGCCCAACTACTGCCCGCCCACGGCCTCGCTCCCCAACCGCCCCAACAGCCTCAAGGTG GACTGGAAGGGCCAGCCGATCGACCTGAGCAACGACGCCAACGCCCACCTGCTGCACCCGGACGAGGTGACGCTG GCCGGCAACCTCCGCCTCGACTGCGCCACGTACCTGACGAGCAAGCGGCGCATCTTCGACCGCCGCCTTCAGTGC CTCCGCATGGGCAAGGAGTTCCGCAAGACGGACGCACAGCAGGCGTGCAAGATTGACGTCAACAAGGCCTCGAAG CTGTGGACAGCCTTTGAGAAGGTGGGCTGGCTCGACGCCAGCTGGATGCGCGACTTTGTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail