© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10769 |
| Gene name | |
| Location | Contig_90:1495..3252 |
| Strand | - |
| Gene length (bp) | 1757 |
| Transcript length (bp) | 1413 |
| Coding sequence length (bp) | 1413 |
| Protein length (aa) | 471 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03798 | TRAM_LAG1_CLN8 | TLC domain | 4.3E-49 | 151 | 380 |
| PF08390 | TRAM1 | TRAM1-like protein | 2.6E-21 | 89 | 147 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P78970|LAG1_SCHPO | Sphingosine N-acyltransferase lag1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lag1 PE=1 SV=2 | 83 | 410 | 9.0E-70 |
| sp|A6ZSP9|LAG1_YEAS7 | Sphingosine N-acyltransferase LAG1 OS=Saccharomyces cerevisiae (strain YJM789) GN=LAG1 PE=3 SV=1 | 8 | 410 | 6.0E-37 |
| sp|P38703|LAG1_YEAST | Sphingosine N-acyltransferase LAG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAG1 PE=1 SV=1 | 8 | 410 | 9.0E-37 |
| sp|P28496|LAC1_YEAST | Sphingosine N-acyltransferase LAC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAC1 PE=1 SV=2 | 90 | 306 | 2.0E-33 |
| sp|A6ZZV7|LAC1_YEAS7 | Sphingosine N-acyltransferase LAC1 OS=Saccharomyces cerevisiae (strain YJM789) GN=LAC1 PE=3 SV=1 | 90 | 306 | 2.0E-33 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P78970|LAG1_SCHPO | Sphingosine N-acyltransferase lag1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lag1 PE=1 SV=2 | 83 | 410 | 9.0E-70 |
| sp|A6ZSP9|LAG1_YEAS7 | Sphingosine N-acyltransferase LAG1 OS=Saccharomyces cerevisiae (strain YJM789) GN=LAG1 PE=3 SV=1 | 8 | 410 | 6.0E-37 |
| sp|P38703|LAG1_YEAST | Sphingosine N-acyltransferase LAG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAG1 PE=1 SV=1 | 8 | 410 | 9.0E-37 |
| sp|P28496|LAC1_YEAST | Sphingosine N-acyltransferase LAC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAC1 PE=1 SV=2 | 90 | 306 | 2.0E-33 |
| sp|A6ZZV7|LAC1_YEAS7 | Sphingosine N-acyltransferase LAC1 OS=Saccharomyces cerevisiae (strain YJM789) GN=LAC1 PE=3 SV=1 | 90 | 306 | 2.0E-33 |
| sp|O59735|LAC1_SCHPO | Sphingosine N-acyltransferase lac1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lac1 PE=1 SV=2 | 95 | 313 | 1.0E-30 |
| sp|G5ED45|HYL1_CAEEL | Ceramide synthase hyl-1 OS=Caenorhabditis elegans GN=hyl-1 PE=1 SV=1 | 142 | 406 | 5.0E-21 |
| sp|Q9LDF2|LAG11_ARATH | LAG1 longevity assurance homolog 1 OS=Arabidopsis thaliana GN=LAG1 PE=2 SV=1 | 151 | 406 | 5.0E-21 |
| sp|Q6EUN0|ASCL1_ORYSJ | ASC1-like protein 1 OS=Oryza sativa subsp. japonica GN=Os02g0581300 PE=2 SV=1 | 146 | 406 | 4.0E-19 |
| sp|Q9LJK3|LAG12_ARATH | LAG1 longevity assurance homolog 2 OS=Arabidopsis thaliana GN=LAG2 PE=1 SV=1 | 139 | 403 | 8.0E-19 |
| sp|Q7Z139|HYL2_CAEEL | Ceramide synthase hyl-2 OS=Caenorhabditis elegans GN=hyl-2 PE=1 SV=1 | 136 | 299 | 8.0E-19 |
| sp|Q84QC0|ASCL3_ORYSJ | ASC1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os03g0264000 PE=2 SV=1 | 144 | 402 | 9.0E-19 |
| sp|Q6NQI8|LAG13_ARATH | LAG1 longevity assurance homolog 3 OS=Arabidopsis thaliana GN=At1g13580 PE=2 SV=2 | 145 | 406 | 1.0E-18 |
| sp|Q924Z4|CERS2_MOUSE | Ceramide synthase 2 OS=Mus musculus GN=Cers2 PE=1 SV=1 | 137 | 397 | 1.0E-18 |
| sp|Q96G23|CERS2_HUMAN | Ceramide synthase 2 OS=Homo sapiens GN=CERS2 PE=1 SV=1 | 137 | 397 | 6.0E-18 |
| sp|Q8N5B7|CERS5_HUMAN | Ceramide synthase 5 OS=Homo sapiens GN=CERS5 PE=2 SV=1 | 148 | 299 | 8.0E-18 |
| sp|Q3ZBF8|CERS2_BOVIN | Ceramide synthase 2 OS=Bos taurus GN=CERS2 PE=2 SV=1 | 137 | 397 | 1.0E-17 |
| sp|Q9D6J1|CERS4_MOUSE | Ceramide synthase 4 OS=Mus musculus GN=Cers4 PE=1 SV=1 | 137 | 414 | 3.0E-17 |
| sp|Q9M6A3|ASC1_SOLLC | Protein ASC1 OS=Solanum lycopersicum GN=Asc-1 PE=2 SV=2 | 140 | 406 | 7.0E-17 |
| sp|Q8W4Y5|ASCL_SOLLC | ASC1-like protein OS=Solanum lycopersicum PE=2 SV=1 | 145 | 404 | 4.0E-16 |
| sp|Q9D6K9|CERS5_MOUSE | Ceramide synthase 5 OS=Mus musculus GN=Cers5 PE=1 SV=1 | 148 | 395 | 4.0E-16 |
| sp|Q6ZMG9|CERS6_HUMAN | Ceramide synthase 6 OS=Homo sapiens GN=CERS6 PE=1 SV=1 | 137 | 395 | 1.0E-15 |
| sp|Q5E9R6|CERS4_BOVIN | Ceramide synthase 4 OS=Bos taurus GN=CERS4 PE=2 SV=1 | 129 | 407 | 4.0E-15 |
| sp|Q8C172|CERS6_MOUSE | Ceramide synthase 6 OS=Mus musculus GN=Cers6 PE=1 SV=1 | 137 | 295 | 1.0E-14 |
| sp|Q6YWS8|ASCL2_ORYSJ | ASC1-like protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0728300 PE=3 SV=2 | 144 | 396 | 9.0E-14 |
| sp|Q9HA82|CERS4_HUMAN | Ceramide synthase 4 OS=Homo sapiens GN=CERS4 PE=1 SV=2 | 129 | 299 | 2.0E-12 |
| sp|Q1A3B0|CERS3_MOUSE | Ceramide synthase 3 OS=Mus musculus GN=Cers3 PE=1 SV=1 | 149 | 398 | 8.0E-12 |
| sp|Q8IU89|CERS3_HUMAN | Ceramide synthase 3 OS=Homo sapiens GN=CERS3 PE=1 SV=2 | 145 | 396 | 2.0E-10 |
| sp|P27545|CERS1_MOUSE | Ceramide synthase 1 OS=Mus musculus GN=Cers1 PE=1 SV=1 | 118 | 269 | 2.0E-08 |
| sp|Q9XWE9|LAGR1_CAEEL | Probable ceramide synthase lagr-1 OS=Caenorhabditis elegans GN=lagr-1 PE=3 SV=1 | 151 | 415 | 9.0E-08 |
| sp|Q15035|TRAM2_HUMAN | Translocating chain-associated membrane protein 2 OS=Homo sapiens GN=TRAM2 PE=1 SV=1 | 47 | 224 | 2.0E-06 |
| sp|Q924Z5|TRAM2_MOUSE | Translocating chain-associated membrane protein 2 OS=Mus musculus GN=Tram2 PE=1 SV=1 | 45 | 224 | 2.0E-06 |
| sp|P27544|CERS1_HUMAN | Ceramide synthase 1 OS=Homo sapiens GN=CERS1 PE=1 SV=1 | 123 | 269 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 60 | 82 | 22 |
| 2 | 113 | 135 | 22 |
| 3 | 156 | 173 | 17 |
| 4 | 201 | 218 | 17 |
| 5 | 250 | 267 | 17 |
| 6 | 282 | 304 | 22 |
| 7 | 356 | 378 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10769 MSDSERRESSPPLDRAAKSAARKTNMNGPLYMQTSGSNVVLVRRLKRRDDGTWRHLARWFVENQIGLSFNLLALL FLAHSFIPKARIHTHKFFHLAYYNPETDKYGTGIDDAYFVAFCIVLFTGLRAGTMEHILAPFGRLQGLARRKVLT RFSEQAWLLIYYSLFWTLGMYIYSTSPYFLNMRELWTDWPSREMDGLMKGYILAQWAFWLQQIIVINIEERRKDH WQMSSHHIITTALISSCYCYHHTRVGNYILVIMDVVDLFLPLAKCLKYADYNTLCDVAFGVFMLVWFAARHVLYI MVCWSVYAHTPNIMPTGCFTGSGAHPAGPEPTPSGLSYLIEPFLSASGRVCYSQTVKWAFLAPLLLLQVITIIWF TMIVRIAVKVIRGDGAEDTRSDDEGDEEEEEEDDEFVYEEARPLEEEVGVEDLDLKGWERRAGVKRQASSSGVSL PGHSDRKELLGRIGCEKQVD* |
| Coding | >Hirsu2|10769 ATGAGCGATTCGGAGCGCCGCGAGTCGTCGCCTCCCCTCGACAGGGCCGCCAAATCCGCCGCGCGCAAGACCAAC ATGAACGGCCCGCTCTACATGCAGACCTCGGGCAGCAACGTCGTCCTCGTCCGCCGCCTGAAGCGCAGAGACGAC GGCACCTGGAGGCACCTGGCCCGCTGGTTCGTCGAGAACCAGATCGGCCTGTCCTTCAACCTCCTCGCCCTCCTC TTCCTCGCCCACAGCTTCATCCCCAAGGCCCGGATACATACCCACAAGTTCTTCCACCTGGCCTACTACAACCCA GAGACGGACAAGTATGGCACCGGCATCGACGACGCATACTTCGTCGCCTTCTGCATCGTCCTCTTCACCGGCCTG CGCGCCGGCACCATGGAACACATCCTCGCCCCCTTCGGCCGCCTCCAGGGCCTCGCCCGCCGCAAGGTCTTGACG CGCTTCAGCGAGCAGGCCTGGCTGCTCATCTACTACAGCCTCTTCTGGACGCTCGGCATGTACATCTACTCGACC TCGCCCTACTTCCTCAACATGCGCGAGCTCTGGACCGACTGGCCCAGCCGCGAGATGGACGGCCTGATGAAGGGC TACATCCTCGCCCAGTGGGCCTTTTGGCTGCAGCAGATCATCGTCATCAACATCGAGGAGCGCCGCAAGGACCAC TGGCAGATGTCCAGCCACCACATCATCACCACCGCCCTCATCTCCTCGTGCTACTGCTACCACCACACCCGCGTC GGCAACTACATCCTCGTCATCATGGACGTCGTCGACCTGTTTCTGCCCCTGGCCAAGTGCCTCAAGTACGCCGAC TACAACACGCTCTGCGACGTCGCCTTTGGCGTCTTCATGCTCGTCTGGTTCGCCGCCCGCCACGTCCTCTACATC ATGGTCTGCTGGTCCGTCTACGCGCACACGCCCAACATCATGCCCACCGGCTGCTTCACCGGCAGCGGAGCCCAC CCGGCCGGGCCGGAGCCGACGCCGTCGGGCCTGTCGTACCTCATCGAGCCCTTCCTCAGCGCCAGCGGCCGCGTC TGCTACAGCCAGACGGTCAAGTGGGCCTTTTTGGCCCCGCTCCTGCTCCTGCAGGTCATCACCATAATCTGGTTC ACCATGATTGTCCGCATCGCCGTCAAGGTCATCCGCGGCGACGGCGCCGAGGACACGCGCAGCGACGACGAGGGC GACGAGGAGGAGGAGGAAGAGGACGACGAGTTCGTCTACGAGGAGGCCCGGCCGCTTGAGGAGGAGGTGGGCGTC GAGGACCTCGACCTCAAGGGCTGGGAGCGCCGGGCCGGGGTTAAGCGCCAGGCCAGCAGCTCGGGAGTGAGCCTG CCGGGGCACAGCGACCGAAAGGAGCTGCTCGGCCGCATCGGCTGCGAGAAGCAGGTCGACTGA |
| Transcript | >Hirsu2|10769 ATGAGCGATTCGGAGCGCCGCGAGTCGTCGCCTCCCCTCGACAGGGCCGCCAAATCCGCCGCGCGCAAGACCAAC ATGAACGGCCCGCTCTACATGCAGACCTCGGGCAGCAACGTCGTCCTCGTCCGCCGCCTGAAGCGCAGAGACGAC GGCACCTGGAGGCACCTGGCCCGCTGGTTCGTCGAGAACCAGATCGGCCTGTCCTTCAACCTCCTCGCCCTCCTC TTCCTCGCCCACAGCTTCATCCCCAAGGCCCGGATACATACCCACAAGTTCTTCCACCTGGCCTACTACAACCCA GAGACGGACAAGTATGGCACCGGCATCGACGACGCATACTTCGTCGCCTTCTGCATCGTCCTCTTCACCGGCCTG CGCGCCGGCACCATGGAACACATCCTCGCCCCCTTCGGCCGCCTCCAGGGCCTCGCCCGCCGCAAGGTCTTGACG CGCTTCAGCGAGCAGGCCTGGCTGCTCATCTACTACAGCCTCTTCTGGACGCTCGGCATGTACATCTACTCGACC TCGCCCTACTTCCTCAACATGCGCGAGCTCTGGACCGACTGGCCCAGCCGCGAGATGGACGGCCTGATGAAGGGC TACATCCTCGCCCAGTGGGCCTTTTGGCTGCAGCAGATCATCGTCATCAACATCGAGGAGCGCCGCAAGGACCAC TGGCAGATGTCCAGCCACCACATCATCACCACCGCCCTCATCTCCTCGTGCTACTGCTACCACCACACCCGCGTC GGCAACTACATCCTCGTCATCATGGACGTCGTCGACCTGTTTCTGCCCCTGGCCAAGTGCCTCAAGTACGCCGAC TACAACACGCTCTGCGACGTCGCCTTTGGCGTCTTCATGCTCGTCTGGTTCGCCGCCCGCCACGTCCTCTACATC ATGGTCTGCTGGTCCGTCTACGCGCACACGCCCAACATCATGCCCACCGGCTGCTTCACCGGCAGCGGAGCCCAC CCGGCCGGGCCGGAGCCGACGCCGTCGGGCCTGTCGTACCTCATCGAGCCCTTCCTCAGCGCCAGCGGCCGCGTC TGCTACAGCCAGACGGTCAAGTGGGCCTTTTTGGCCCCGCTCCTGCTCCTGCAGGTCATCACCATAATCTGGTTC ACCATGATTGTCCGCATCGCCGTCAAGGTCATCCGCGGCGACGGCGCCGAGGACACGCGCAGCGACGACGAGGGC GACGAGGAGGAGGAGGAAGAGGACGACGAGTTCGTCTACGAGGAGGCCCGGCCGCTTGAGGAGGAGGTGGGCGTC GAGGACCTCGACCTCAAGGGCTGGGAGCGCCGGGCCGGGGTTAAGCGCCAGGCCAGCAGCTCGGGAGTGAGCCTG CCGGGGCACAGCGACCGAAAGGAGCTGCTCGGCCGCATCGGCTGCGAGAAGCAGGTCGACTGA |
| Gene | >Hirsu2|10769 ATGAGCGATTCGGAGCGCCGCGAGTCGTCGCCTCCCCTCGACAGGGCCGCCAAATCCGCCGCGCGCAAGACCAAC ATGAACGGCCCGCTCTACATGCAGACCTCGGGCAGCAACGTCGTCCTCGTCCGCCGCCTGAAGCGCAGAGACGAC GGCACCTGGAGGCACCTGGCCCGCTGGTTCGTCGAGAACCAGATCGGTTCGTCTCCCCTCCCACTCGACTCCCGA CACGTCTGCCCTCTCCGCCTCTTGGCCCCATTGCCTCGGCTGTGAGCACGCGTCGAGGCCGTCGAGGTGCCCTGC CGCCTGCCTTCCGCCCGTCCTTCTCTCTGTCTCTCTCCTTGTCTCTCTCCGTGTCTCTCCGTGTCTCTCTCGACC CTTCACCCTCCCCCCCACCAGTCGTCGTTCAACGCTAACACTCTCCCTCAATCCGCAGGCCTGTCCTTCAACCTC CTCGCCCTCCTCTTCCTCGCCCACAGCTTCATCCCCAAGGCCCGGATACATACCCACAAGTTCTTCCACCTGGCC TACTACAACCCAGAGACGGACAAGTATGGCACCGGCATCGACGACGCATACTTCGTCGCCTTCTGCATCGTCCTC TTCACCGGCCTGCGCGCCGGCACCATGGAACACATCCTCGCCCCCTTCGGCCGCCTCCAGGGCCTCGCCCGCCGC AAGGTCTTGACGCGCTTCAGCGAGCAGGCCTGGCTGCTCATCTACTACAGCCTCTTCTGGACGCTCGGCATGGTA CGTCGCCCGGCCCGCCGCGCCGGCGGGAGAGAGCGCTGACCCGAGGCAGTACATCTACTCGACCTCGCCCTACTT CCTCAACATGCGCGAGCTCTGGACCGACTGGCCCAGCCGCGAGATGGACGGCCTGATGAAGGGCTACATCCTCGC CCAGTGGGCCTTTTGGCTGCAGCAGATCATCGTCATCAACATCGAGGAGCGCCGCAAGGACCACTGGCAGATGTC CAGCCACCACATCATCACCACCGCCCTCATCTCCTCGTGCTACTGCTACCACCACACCCGCGTCGGCAACTACAT CCTCGTCATCATGGACGTCGTCGACCTGTTTCTGCCCGTAAGTCTCGCCCCGTCGTCGGCGGGAGCCGGCACGCT GACCCTCTCCGCCGTAGCTGGCCAAGTGCCTCAAGTACGCCGACTACAACACGCTCTGCGACGTCGCCTTTGGCG TCTTCATGCTCGTCTGGTTCGCCGCCCGCCACGTCCTCTACATCATGGTCTGCTGGTCCGTCTACGCGCACACGC CCAACATCATGCCCACCGGCTGCTTCACCGGCAGCGGAGCCCACCCGGCCGGGCCGGAGCCGACGCCGTCGGGCC TGTCGTACCTCATCGAGCCCTTCCTCAGCGCCAGCGGCCGCGTCTGCTACAGCCAGACGGTCAAGTGGGCCTTTT TGGCCCCGCTCCTGCTCCTGCAGGTCATCACCATAATCTGGTTCACCATGATTGTCCGCATCGCCGTCAAGGTCA TCCGCGGCGACGGCGCCGAGGACACGCGCAGCGACGACGAGGGCGACGAGGAGGAGGAGGAAGAGGACGACGAGT TCGTCTACGAGGAGGCCCGGCCGCTTGAGGAGGAGGTGGGCGTCGAGGACCTCGACCTCAAGGGCTGGGAGCGCC GGGCCGGGGTTAAGCGCCAGGCCAGCAGCTCGGGAGTGAGCCTGCCGGGGCACAGCGACCGAAAGGAGCTGCTCG GCCGCATCGGCTGCGAGAAGCAGGTCGACTGA |