Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1076
Gene name
LocationContig_1222:1226..1846
Strand+
Gene length (bp)620
Transcript length (bp)543
Coding sequence length (bp)543
Protein length (aa) 181

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 1.4E-05 56 84
PF01476 LysM LysM domain 2.1E-02 133 168

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 30 179 1.0E-41
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 30 179 2.0E-39
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 23 179 3.0E-39
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 11 179 9.0E-18
sp|D4B4P8|LYSM2_ARTBC LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 62 179 4.0E-17
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Swissprot ID Swissprot Description Start End E-value
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 30 179 1.0E-41
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 30 179 2.0E-39
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 23 179 3.0E-39
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 11 179 9.0E-18
sp|D4B4P8|LYSM2_ARTBC LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 62 179 4.0E-17
sp|D4AZ68|LYSM3_ARTBC LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 41 102 2.0E-10
sp|D4AZ68|LYSM3_ARTBC LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 52 179 9.0E-10
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 127 179 3.0E-09
sp|D4AVW3|LYSM5_ARTBC LysM domain-containing protein ARB_00327 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_00327 PE=3 SV=2 120 179 2.0E-08
sp|D4AVW3|LYSM5_ARTBC LysM domain-containing protein ARB_00327 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_00327 PE=3 SV=2 104 177 6.0E-06
sp|D4B4Q2|LYSM4_ARTBC LysM domain-containing protein ARB_03442 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03442 PE=3 SV=2 122 177 8.0E-06
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.1467 0.0664 0.9547 0.0422 0.0855 0.0281 0.1701 0.2273 0.1394 0.0082

SignalP

SignalP signal predicted Location Score
Yes 1 - 26 0.871861

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup265
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|2459
Ophiocordyceps australis map64 (Brazil) OphauB2|4462
Ophiocordyceps australis map64 (Brazil) OphauB2|7698
Ophiocordyceps camponoti-floridani Ophcf2|02949
Ophiocordyceps camponoti-rufipedis Ophun1|7477
Ophiocordyceps kimflemingae Ophio5|3948
Ophiocordyceps subramaniannii Hirsu2|1076 (this protein)
Ophiocordyceps subramaniannii Hirsu2|3841
Ophiocordyceps subramaniannii Hirsu2|6024
Ophiocordyceps subramaniannii Hirsu2|8728
Ophiocordyceps subramaniannii Hirsu2|9191

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1076
MAPLSLRSLGLLLFSSGQLAAGAALAGTGTPTAPVQAVETPQPAQPSMVPNCVSFYRVRRGETCESVAATHGISV
GQFQRWNAGTGPGCTALVADAWACVGVKDEPSPTPTDKPVATPLPIQDGMVKNCRRFHHVDKEQRCEAIEARYGV
SLEDLVRWNPAIGKDCTNMWANYYLCVGVA*
Coding >Hirsu2|1076
ATGGCGCCGCTCTCCCTCCGCTCCCTGGGTCTGCTGCTCTTCAGCAGCGGCCAGCTCGCGGCCGGGGCCGCCCTG
GCCGGGACCGGGACGCCGACGGCCCCAGTGCAAGCGGTCGAGACGCCGCAGCCGGCGCAGCCAAGCATGGTGCCC
AACTGCGTGTCCTTCTACCGCGTGCGCCGCGGCGAGACGTGCGAGTCGGTGGCAGCCACGCACGGCATCTCGGTC
GGCCAGTTCCAGCGGTGGAACGCCGGGACGGGGCCGGGCTGCACGGCGCTCGTCGCCGACGCGTGGGCCTGCGTC
GGCGTCAAGGACGAGCCGAGTCCGACGCCGACGGACAAGCCGGTGGCGACGCCGCTGCCGATCCAGGACGGCATG
GTCAAGAACTGCCGCCGCTTCCACCACGTCGACAAGGAGCAGAGGTGCGAGGCCATCGAGGCCCGGTACGGCGTC
TCGCTCGAGGACCTGGTCCGCTGGAACCCGGCCATCGGGAAGGACTGCACCAACATGTGGGCCAACTACTATCTC
TGCGTCGGCGTCGCTTGA
Transcript >Hirsu2|1076
ATGGCGCCGCTCTCCCTCCGCTCCCTGGGTCTGCTGCTCTTCAGCAGCGGCCAGCTCGCGGCCGGGGCCGCCCTG
GCCGGGACCGGGACGCCGACGGCCCCAGTGCAAGCGGTCGAGACGCCGCAGCCGGCGCAGCCAAGCATGGTGCCC
AACTGCGTGTCCTTCTACCGCGTGCGCCGCGGCGAGACGTGCGAGTCGGTGGCAGCCACGCACGGCATCTCGGTC
GGCCAGTTCCAGCGGTGGAACGCCGGGACGGGGCCGGGCTGCACGGCGCTCGTCGCCGACGCGTGGGCCTGCGTC
GGCGTCAAGGACGAGCCGAGTCCGACGCCGACGGACAAGCCGGTGGCGACGCCGCTGCCGATCCAGGACGGCATG
GTCAAGAACTGCCGCCGCTTCCACCACGTCGACAAGGAGCAGAGGTGCGAGGCCATCGAGGCCCGGTACGGCGTC
TCGCTCGAGGACCTGGTCCGCTGGAACCCGGCCATCGGGAAGGACTGCACCAACATGTGGGCCAACTACTATCTC
TGCGTCGGCGTCGCTTGA
Gene >Hirsu2|1076
ATGGCGCCGCTCTCCCTCCGCTCCCTGGGTCTGCTGCTCTTCAGCAGCGGCCAGCTCGCGGCCGGGGCCGCCCTG
GCCGGGACCGGGACGCCGACGGCCCCAGTGCAAGGTACGCAGAAGCGCACGATTGATTTATTTTCTTTTCTCCCC
CGCGGGGGAACTCTTCGCTGAAATCTTCTTTCTCAGCGGTCGAGACGCCGCAGCCGGCGCAGCCAAGCATGGTGC
CCAACTGCGTGTCCTTCTACCGCGTGCGCCGCGGCGAGACGTGCGAGTCGGTGGCAGCCACGCACGGCATCTCGG
TCGGCCAGTTCCAGCGGTGGAACGCCGGGACGGGGCCGGGCTGCACGGCGCTCGTCGCCGACGCGTGGGCCTGCG
TCGGCGTCAAGGACGAGCCGAGTCCGACGCCGACGGACAAGCCGGTGGCGACGCCGCTGCCGATCCAGGACGGCA
TGGTCAAGAACTGCCGCCGCTTCCACCACGTCGACAAGGAGCAGAGGTGCGAGGCCATCGAGGCCCGGTACGGCG
TCTCGCTCGAGGACCTGGTCCGCTGGAACCCGGCCATCGGGAAGGACTGCACCAACATGTGGGCCAACTACTATC
TCTGCGTCGGCGTCGCTTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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