Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1076
Gene name
LocationContig_1222:1226..1846
Strand+
Gene length (bp)620
Transcript length (bp)543
Coding sequence length (bp)543
Protein length (aa) 181

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 1.4E-05 56 84
PF01476 LysM LysM domain 2.1E-02 133 168

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 30 179 1.0E-41
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 30 179 2.0E-39
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 23 179 3.0E-39
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 11 179 9.0E-18
sp|D4B4P8|LYSM2_ARTBC LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 62 179 4.0E-17
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Swissprot ID Swissprot Description Start End E-value
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 30 179 1.0E-41
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 30 179 2.0E-39
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 23 179 3.0E-39
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 11 179 9.0E-18
sp|D4B4P8|LYSM2_ARTBC LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 62 179 4.0E-17
sp|D4AZ68|LYSM3_ARTBC LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 41 102 2.0E-10
sp|D4AZ68|LYSM3_ARTBC LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 52 179 9.0E-10
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 127 179 3.0E-09
sp|D4AVW3|LYSM5_ARTBC LysM domain-containing protein ARB_00327 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_00327 PE=3 SV=2 120 179 2.0E-08
sp|D4AVW3|LYSM5_ARTBC LysM domain-containing protein ARB_00327 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_00327 PE=3 SV=2 104 177 6.0E-06
sp|D4B4Q2|LYSM4_ARTBC LysM domain-containing protein ARB_03442 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03442 PE=3 SV=2 122 177 8.0E-06
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1076
MAPLSLRSLGLLLFSSGQLAAGAALAGTGTPTAPVQAVETPQPAQPSMVPNCVSFYRVRRGETCESVAATHGISV
GQFQRWNAGTGPGCTALVADAWACVGVKDEPSPTPTDKPVATPLPIQDGMVKNCRRFHHVDKEQRCEAIEARYGV
SLEDLVRWNPAIGKDCTNMWANYYLCVGVA*
Coding >Hirsu2|1076
ATGGCGCCGCTCTCCCTCCGCTCCCTGGGTCTGCTGCTCTTCAGCAGCGGCCAGCTCGCGGCCGGGGCCGCCCTG
GCCGGGACCGGGACGCCGACGGCCCCAGTGCAAGCGGTCGAGACGCCGCAGCCGGCGCAGCCAAGCATGGTGCCC
AACTGCGTGTCCTTCTACCGCGTGCGCCGCGGCGAGACGTGCGAGTCGGTGGCAGCCACGCACGGCATCTCGGTC
GGCCAGTTCCAGCGGTGGAACGCCGGGACGGGGCCGGGCTGCACGGCGCTCGTCGCCGACGCGTGGGCCTGCGTC
GGCGTCAAGGACGAGCCGAGTCCGACGCCGACGGACAAGCCGGTGGCGACGCCGCTGCCGATCCAGGACGGCATG
GTCAAGAACTGCCGCCGCTTCCACCACGTCGACAAGGAGCAGAGGTGCGAGGCCATCGAGGCCCGGTACGGCGTC
TCGCTCGAGGACCTGGTCCGCTGGAACCCGGCCATCGGGAAGGACTGCACCAACATGTGGGCCAACTACTATCTC
TGCGTCGGCGTCGCTTGA
Transcript >Hirsu2|1076
ATGGCGCCGCTCTCCCTCCGCTCCCTGGGTCTGCTGCTCTTCAGCAGCGGCCAGCTCGCGGCCGGGGCCGCCCTG
GCCGGGACCGGGACGCCGACGGCCCCAGTGCAAGCGGTCGAGACGCCGCAGCCGGCGCAGCCAAGCATGGTGCCC
AACTGCGTGTCCTTCTACCGCGTGCGCCGCGGCGAGACGTGCGAGTCGGTGGCAGCCACGCACGGCATCTCGGTC
GGCCAGTTCCAGCGGTGGAACGCCGGGACGGGGCCGGGCTGCACGGCGCTCGTCGCCGACGCGTGGGCCTGCGTC
GGCGTCAAGGACGAGCCGAGTCCGACGCCGACGGACAAGCCGGTGGCGACGCCGCTGCCGATCCAGGACGGCATG
GTCAAGAACTGCCGCCGCTTCCACCACGTCGACAAGGAGCAGAGGTGCGAGGCCATCGAGGCCCGGTACGGCGTC
TCGCTCGAGGACCTGGTCCGCTGGAACCCGGCCATCGGGAAGGACTGCACCAACATGTGGGCCAACTACTATCTC
TGCGTCGGCGTCGCTTGA
Gene >Hirsu2|1076
ATGGCGCCGCTCTCCCTCCGCTCCCTGGGTCTGCTGCTCTTCAGCAGCGGCCAGCTCGCGGCCGGGGCCGCCCTG
GCCGGGACCGGGACGCCGACGGCCCCAGTGCAAGGTACGCAGAAGCGCACGATTGATTTATTTTCTTTTCTCCCC
CGCGGGGGAACTCTTCGCTGAAATCTTCTTTCTCAGCGGTCGAGACGCCGCAGCCGGCGCAGCCAAGCATGGTGC
CCAACTGCGTGTCCTTCTACCGCGTGCGCCGCGGCGAGACGTGCGAGTCGGTGGCAGCCACGCACGGCATCTCGG
TCGGCCAGTTCCAGCGGTGGAACGCCGGGACGGGGCCGGGCTGCACGGCGCTCGTCGCCGACGCGTGGGCCTGCG
TCGGCGTCAAGGACGAGCCGAGTCCGACGCCGACGGACAAGCCGGTGGCGACGCCGCTGCCGATCCAGGACGGCA
TGGTCAAGAACTGCCGCCGCTTCCACCACGTCGACAAGGAGCAGAGGTGCGAGGCCATCGAGGCCCGGTACGGCG
TCTCGCTCGAGGACCTGGTCCGCTGGAACCCGGCCATCGGGAAGGACTGCACCAACATGTGGGCCAACTACTATC
TCTGCGTCGGCGTCGCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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