Protein ID | Hirsu2|1076 |
Gene name | |
Location | Contig_1222:1226..1846 |
Strand | + |
Gene length (bp) | 620 |
Transcript length (bp) | 543 |
Coding sequence length (bp) | 543 |
Protein length (aa) | 181 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01476 | LysM | LysM domain | 1.4E-05 | 56 | 84 |
PF01476 | LysM | LysM domain | 2.1E-02 | 133 | 168 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|D4ALG0|LYSM1_ARTBC | LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 | 30 | 179 | 1.0E-41 |
sp|D4ALG0|LYSM1_ARTBC | LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 | 30 | 179 | 2.0E-39 |
sp|D4ALG0|LYSM1_ARTBC | LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 | 23 | 179 | 3.0E-39 |
sp|D4ALG0|LYSM1_ARTBC | LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 | 11 | 179 | 9.0E-18 |
sp|D4B4P8|LYSM2_ARTBC | LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 | 62 | 179 | 4.0E-17 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|D4ALG0|LYSM1_ARTBC | LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 | 30 | 179 | 1.0E-41 |
sp|D4ALG0|LYSM1_ARTBC | LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 | 30 | 179 | 2.0E-39 |
sp|D4ALG0|LYSM1_ARTBC | LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 | 23 | 179 | 3.0E-39 |
sp|D4ALG0|LYSM1_ARTBC | LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 | 11 | 179 | 9.0E-18 |
sp|D4B4P8|LYSM2_ARTBC | LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 | 62 | 179 | 4.0E-17 |
sp|D4AZ68|LYSM3_ARTBC | LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 | 41 | 102 | 2.0E-10 |
sp|D4AZ68|LYSM3_ARTBC | LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 | 52 | 179 | 9.0E-10 |
sp|D4B5F9|PGDA_ARTBC | Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 | 127 | 179 | 3.0E-09 |
sp|D4AVW3|LYSM5_ARTBC | LysM domain-containing protein ARB_00327 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_00327 PE=3 SV=2 | 120 | 179 | 2.0E-08 |
sp|D4AVW3|LYSM5_ARTBC | LysM domain-containing protein ARB_00327 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_00327 PE=3 SV=2 | 104 | 177 | 6.0E-06 |
sp|D4B4Q2|LYSM4_ARTBC | LysM domain-containing protein ARB_03442 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03442 PE=3 SV=2 | 122 | 177 | 8.0E-06 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1467 | 0.0664 | 0.9547 | 0.0422 | 0.0855 | 0.0281 | 0.1701 | 0.2273 | 0.1394 | 0.0082 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 26 | 0.871861 |
Orthofinder run ID | 4 |
Orthogroup | 265 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1076 MAPLSLRSLGLLLFSSGQLAAGAALAGTGTPTAPVQAVETPQPAQPSMVPNCVSFYRVRRGETCESVAATHGISV GQFQRWNAGTGPGCTALVADAWACVGVKDEPSPTPTDKPVATPLPIQDGMVKNCRRFHHVDKEQRCEAIEARYGV SLEDLVRWNPAIGKDCTNMWANYYLCVGVA* |
Coding | >Hirsu2|1076 ATGGCGCCGCTCTCCCTCCGCTCCCTGGGTCTGCTGCTCTTCAGCAGCGGCCAGCTCGCGGCCGGGGCCGCCCTG GCCGGGACCGGGACGCCGACGGCCCCAGTGCAAGCGGTCGAGACGCCGCAGCCGGCGCAGCCAAGCATGGTGCCC AACTGCGTGTCCTTCTACCGCGTGCGCCGCGGCGAGACGTGCGAGTCGGTGGCAGCCACGCACGGCATCTCGGTC GGCCAGTTCCAGCGGTGGAACGCCGGGACGGGGCCGGGCTGCACGGCGCTCGTCGCCGACGCGTGGGCCTGCGTC GGCGTCAAGGACGAGCCGAGTCCGACGCCGACGGACAAGCCGGTGGCGACGCCGCTGCCGATCCAGGACGGCATG GTCAAGAACTGCCGCCGCTTCCACCACGTCGACAAGGAGCAGAGGTGCGAGGCCATCGAGGCCCGGTACGGCGTC TCGCTCGAGGACCTGGTCCGCTGGAACCCGGCCATCGGGAAGGACTGCACCAACATGTGGGCCAACTACTATCTC TGCGTCGGCGTCGCTTGA |
Transcript | >Hirsu2|1076 ATGGCGCCGCTCTCCCTCCGCTCCCTGGGTCTGCTGCTCTTCAGCAGCGGCCAGCTCGCGGCCGGGGCCGCCCTG GCCGGGACCGGGACGCCGACGGCCCCAGTGCAAGCGGTCGAGACGCCGCAGCCGGCGCAGCCAAGCATGGTGCCC AACTGCGTGTCCTTCTACCGCGTGCGCCGCGGCGAGACGTGCGAGTCGGTGGCAGCCACGCACGGCATCTCGGTC GGCCAGTTCCAGCGGTGGAACGCCGGGACGGGGCCGGGCTGCACGGCGCTCGTCGCCGACGCGTGGGCCTGCGTC GGCGTCAAGGACGAGCCGAGTCCGACGCCGACGGACAAGCCGGTGGCGACGCCGCTGCCGATCCAGGACGGCATG GTCAAGAACTGCCGCCGCTTCCACCACGTCGACAAGGAGCAGAGGTGCGAGGCCATCGAGGCCCGGTACGGCGTC TCGCTCGAGGACCTGGTCCGCTGGAACCCGGCCATCGGGAAGGACTGCACCAACATGTGGGCCAACTACTATCTC TGCGTCGGCGTCGCTTGA |
Gene | >Hirsu2|1076 ATGGCGCCGCTCTCCCTCCGCTCCCTGGGTCTGCTGCTCTTCAGCAGCGGCCAGCTCGCGGCCGGGGCCGCCCTG GCCGGGACCGGGACGCCGACGGCCCCAGTGCAAGGTACGCAGAAGCGCACGATTGATTTATTTTCTTTTCTCCCC CGCGGGGGAACTCTTCGCTGAAATCTTCTTTCTCAGCGGTCGAGACGCCGCAGCCGGCGCAGCCAAGCATGGTGC CCAACTGCGTGTCCTTCTACCGCGTGCGCCGCGGCGAGACGTGCGAGTCGGTGGCAGCCACGCACGGCATCTCGG TCGGCCAGTTCCAGCGGTGGAACGCCGGGACGGGGCCGGGCTGCACGGCGCTCGTCGCCGACGCGTGGGCCTGCG TCGGCGTCAAGGACGAGCCGAGTCCGACGCCGACGGACAAGCCGGTGGCGACGCCGCTGCCGATCCAGGACGGCA TGGTCAAGAACTGCCGCCGCTTCCACCACGTCGACAAGGAGCAGAGGTGCGAGGCCATCGAGGCCCGGTACGGCG TCTCGCTCGAGGACCTGGTCCGCTGGAACCCGGCCATCGGGAAGGACTGCACCAACATGTGGGCCAACTACTATC TCTGCGTCGGCGTCGCTTGA |