Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|10739
Gene name
LocationContig_9:9066..9915
Strand+
Gene length (bp)849
Transcript length (bp)849
Coding sequence length (bp)849
Protein length (aa) 283

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13019 Sde2_N_Ubi Silencing defective 2 N-terminal ubiquitin domain 7.8E-69 7 168

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O14113|SDE2_SCHPO Telomere maintenance protein SDE2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sde2 PE=3 SV=1 29 200 2.0E-20
sp|Q7T293|SDE2_DANRE Protein SDE2 homolog OS=Danio rerio GN=sde2 PE=2 SV=2 83 206 6.0E-12
sp|Q07G43|SDE2_XENTR Protein SDE2 homolog OS=Xenopus tropicalis GN=sde2 PE=2 SV=1 86 156 3.0E-11
sp|Q6IQ49|SDE2_HUMAN Protein SDE2 homolog OS=Homo sapiens GN=SDE2 PE=1 SV=1 66 208 4.0E-11
sp|Q5RET9|SDE2_PONAB Protein SDE2 homolog OS=Pongo abelii GN=SDE2 PE=2 SV=1 66 208 7.0E-11
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[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O14113|SDE2_SCHPO Telomere maintenance protein SDE2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sde2 PE=3 SV=1 29 200 2.0E-20
sp|Q7T293|SDE2_DANRE Protein SDE2 homolog OS=Danio rerio GN=sde2 PE=2 SV=2 83 206 6.0E-12
sp|Q07G43|SDE2_XENTR Protein SDE2 homolog OS=Xenopus tropicalis GN=sde2 PE=2 SV=1 86 156 3.0E-11
sp|Q6IQ49|SDE2_HUMAN Protein SDE2 homolog OS=Homo sapiens GN=SDE2 PE=1 SV=1 66 208 4.0E-11
sp|Q5RET9|SDE2_PONAB Protein SDE2 homolog OS=Pongo abelii GN=SDE2 PE=2 SV=1 66 208 7.0E-11
sp|Q6NRI5|SDE2_XENLA Protein SDE2 homolog OS=Xenopus laevis GN=sde2 PE=2 SV=1 88 156 8.0E-11
sp|Q8K1J5|SDE2_MOUSE Protein SDE2 homolog OS=Mus musculus GN=Sde2 PE=1 SV=1 90 212 2.0E-08
sp|Q5BJN8|SDE2_RAT Protein SDE2 homolog OS=Rattus norvegicus GN=Sde2 PE=1 SV=2 90 156 4.0E-08
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.6219 0.6221 0.0628 0.0249 0.3976 0.0154 0.076 0.0415 0.0683 0.0108

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 5 27 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup1341
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4340
Ophiocordyceps australis map64 (Brazil) OphauB2|3283
Ophiocordyceps camponoti-floridani Ophcf2|06683
Ophiocordyceps camponoti-rufipedis Ophun1|98
Ophiocordyceps kimflemingae Ophio5|7447
Ophiocordyceps subramaniannii Hirsu2|10739 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|10739
MASQILNVLVATFGGLGLPSTLVVPVSHATTVTRLREEINHRLPATDSRLILTTLSNRQLPERSEAPISTYISTS
HDEFLSLRLAVPLCGGKGGFGSQLRAAGGRMSSRKNRNQDDHGSSRNLDGRRLRTVNEAKALAEYLAIKPDMEKK
EKEKRRKRWEQIVQMSEQKETEIRSGNTARLDGKWVEDKEESNEKTRDAVLAAMKSGNYTDTLLGTSNGSTSTDR
GSNRSSSSGGDRASSKELSPASDRETTQKSKPRTFFGFEEDDEFMTSEDEDSGTTRE*
Coding >Hirsu2|10739
ATGGCTTCGCAAATCCTCAACGTCTTGGTTGCTACTTTCGGCGGCCTGGGCTTGCCCTCGACTCTCGTCGTACCA
GTGTCGCACGCGACCACCGTCACCCGGCTACGGGAGGAGATCAACCACAGGCTGCCTGCAACCGACAGCAGACTC
ATCTTGACGACACTGTCAAACAGACAACTTCCCGAGCGGTCGGAGGCTCCTATTTCCACGTATATCTCCACGAGC
CACGATGAGTTTCTTTCCCTACGACTGGCCGTGCCGCTGTGCGGCGGCAAAGGAGGGTTCGGGTCGCAGCTTAGG
GCTGCCGGAGGACGAATGTCGTCGCGCAAAAACCGAAACCAAGACGACCATGGGTCAAGCCGAAACCTCGACGGT
CGAAGACTCCGGACGGTCAACGAAGCCAAGGCTTTGGCAGAATATCTTGCCATCAAGCCAGACATGGAGAAAAAG
GAGAAGGAAAAGCGACGGAAGCGCTGGGAGCAGATTGTTCAAATGTCTGAGCAAAAAGAAACCGAGATAAGGTCA
GGCAACACCGCCCGACTCGATGGCAAATGGGTTGAGGACAAGGAAGAGAGCAACGAGAAGACGCGAGACGCCGTA
CTGGCTGCAATGAAGTCCGGAAACTACACAGACACTCTTCTGGGCACATCCAACGGCTCTACCTCCACGGATCGA
GGTTCCAACCGCAGCAGCTCCAGTGGAGGGGATCGAGCTAGTTCCAAGGAGTTATCGCCAGCGTCAGACCGGGAA
ACCACACAGAAGAGCAAACCGAGGACCTTTTTCGGGTTCGAGGAAGATGATGAGTTCATGACTTCCGAGGATGAG
GACAGCGGAACGACGAGGGAATGA
Transcript >Hirsu2|10739
ATGGCTTCGCAAATCCTCAACGTCTTGGTTGCTACTTTCGGCGGCCTGGGCTTGCCCTCGACTCTCGTCGTACCA
GTGTCGCACGCGACCACCGTCACCCGGCTACGGGAGGAGATCAACCACAGGCTGCCTGCAACCGACAGCAGACTC
ATCTTGACGACACTGTCAAACAGACAACTTCCCGAGCGGTCGGAGGCTCCTATTTCCACGTATATCTCCACGAGC
CACGATGAGTTTCTTTCCCTACGACTGGCCGTGCCGCTGTGCGGCGGCAAAGGAGGGTTCGGGTCGCAGCTTAGG
GCTGCCGGAGGACGAATGTCGTCGCGCAAAAACCGAAACCAAGACGACCATGGGTCAAGCCGAAACCTCGACGGT
CGAAGACTCCGGACGGTCAACGAAGCCAAGGCTTTGGCAGAATATCTTGCCATCAAGCCAGACATGGAGAAAAAG
GAGAAGGAAAAGCGACGGAAGCGCTGGGAGCAGATTGTTCAAATGTCTGAGCAAAAAGAAACCGAGATAAGGTCA
GGCAACACCGCCCGACTCGATGGCAAATGGGTTGAGGACAAGGAAGAGAGCAACGAGAAGACGCGAGACGCCGTA
CTGGCTGCAATGAAGTCCGGAAACTACACAGACACTCTTCTGGGCACATCCAACGGCTCTACCTCCACGGATCGA
GGTTCCAACCGCAGCAGCTCCAGTGGAGGGGATCGAGCTAGTTCCAAGGAGTTATCGCCAGCGTCAGACCGGGAA
ACCACACAGAAGAGCAAACCGAGGACCTTTTTCGGGTTCGAGGAAGATGATGAGTTCATGACTTCCGAGGATGAG
GACAGCGGAACGACGAGGGAATGA
Gene >Hirsu2|10739
ATGGCTTCGCAAATCCTCAACGTCTTGGTTGCTACTTTCGGCGGCCTGGGCTTGCCCTCGACTCTCGTCGTACCA
GTGTCGCACGCGACCACCGTCACCCGGCTACGGGAGGAGATCAACCACAGGCTGCCTGCAACCGACAGCAGACTC
ATCTTGACGACACTGTCAAACAGACAACTTCCCGAGCGGTCGGAGGCTCCTATTTCCACGTATATCTCCACGAGC
CACGATGAGTTTCTTTCCCTACGACTGGCCGTGCCGCTGTGCGGCGGCAAAGGAGGGTTCGGGTCGCAGCTTAGG
GCTGCCGGAGGACGAATGTCGTCGCGCAAAAACCGAAACCAAGACGACCATGGGTCAAGCCGAAACCTCGACGGT
CGAAGACTCCGGACGGTCAACGAAGCCAAGGCTTTGGCAGAATATCTTGCCATCAAGCCAGACATGGAGAAAAAG
GAGAAGGAAAAGCGACGGAAGCGCTGGGAGCAGATTGTTCAAATGTCTGAGCAAAAAGAAACCGAGATAAGGTCA
GGCAACACCGCCCGACTCGATGGCAAATGGGTTGAGGACAAGGAAGAGAGCAACGAGAAGACGCGAGACGCCGTA
CTGGCTGCAATGAAGTCCGGAAACTACACAGACACTCTTCTGGGCACATCCAACGGCTCTACCTCCACGGATCGA
GGTTCCAACCGCAGCAGCTCCAGTGGAGGGGATCGAGCTAGTTCCAAGGAGTTATCGCCAGCGTCAGACCGGGAA
ACCACACAGAAGAGCAAACCGAGGACCTTTTTCGGGTTCGAGGAAGATGATGAGTTCATGACTTCCGAGGATGAG
GACAGCGGAACGACGAGGGAATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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