© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|10739 |
| Gene name | |
| Location | Contig_9:9066..9915 |
| Strand | + |
| Gene length (bp) | 849 |
| Transcript length (bp) | 849 |
| Coding sequence length (bp) | 849 |
| Protein length (aa) | 283 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13019 | Sde2_N_Ubi | Silencing defective 2 N-terminal ubiquitin domain | 7.8E-69 | 7 | 168 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14113|SDE2_SCHPO | Telomere maintenance protein SDE2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sde2 PE=3 SV=1 | 29 | 200 | 2.0E-20 |
| sp|Q7T293|SDE2_DANRE | Protein SDE2 homolog OS=Danio rerio GN=sde2 PE=2 SV=2 | 83 | 206 | 6.0E-12 |
| sp|Q07G43|SDE2_XENTR | Protein SDE2 homolog OS=Xenopus tropicalis GN=sde2 PE=2 SV=1 | 86 | 156 | 3.0E-11 |
| sp|Q6IQ49|SDE2_HUMAN | Protein SDE2 homolog OS=Homo sapiens GN=SDE2 PE=1 SV=1 | 66 | 208 | 4.0E-11 |
| sp|Q5RET9|SDE2_PONAB | Protein SDE2 homolog OS=Pongo abelii GN=SDE2 PE=2 SV=1 | 66 | 208 | 7.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14113|SDE2_SCHPO | Telomere maintenance protein SDE2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sde2 PE=3 SV=1 | 29 | 200 | 2.0E-20 |
| sp|Q7T293|SDE2_DANRE | Protein SDE2 homolog OS=Danio rerio GN=sde2 PE=2 SV=2 | 83 | 206 | 6.0E-12 |
| sp|Q07G43|SDE2_XENTR | Protein SDE2 homolog OS=Xenopus tropicalis GN=sde2 PE=2 SV=1 | 86 | 156 | 3.0E-11 |
| sp|Q6IQ49|SDE2_HUMAN | Protein SDE2 homolog OS=Homo sapiens GN=SDE2 PE=1 SV=1 | 66 | 208 | 4.0E-11 |
| sp|Q5RET9|SDE2_PONAB | Protein SDE2 homolog OS=Pongo abelii GN=SDE2 PE=2 SV=1 | 66 | 208 | 7.0E-11 |
| sp|Q6NRI5|SDE2_XENLA | Protein SDE2 homolog OS=Xenopus laevis GN=sde2 PE=2 SV=1 | 88 | 156 | 8.0E-11 |
| sp|Q8K1J5|SDE2_MOUSE | Protein SDE2 homolog OS=Mus musculus GN=Sde2 PE=1 SV=1 | 90 | 212 | 2.0E-08 |
| sp|Q5BJN8|SDE2_RAT | Protein SDE2 homolog OS=Rattus norvegicus GN=Sde2 PE=1 SV=2 | 90 | 156 | 4.0E-08 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.6219 | 0.6221 | 0.0628 | 0.0249 | 0.3976 | 0.0154 | 0.076 | 0.0415 | 0.0683 | 0.0108 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 1341 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10739 MASQILNVLVATFGGLGLPSTLVVPVSHATTVTRLREEINHRLPATDSRLILTTLSNRQLPERSEAPISTYISTS HDEFLSLRLAVPLCGGKGGFGSQLRAAGGRMSSRKNRNQDDHGSSRNLDGRRLRTVNEAKALAEYLAIKPDMEKK EKEKRRKRWEQIVQMSEQKETEIRSGNTARLDGKWVEDKEESNEKTRDAVLAAMKSGNYTDTLLGTSNGSTSTDR GSNRSSSSGGDRASSKELSPASDRETTQKSKPRTFFGFEEDDEFMTSEDEDSGTTRE* |
| Coding | >Hirsu2|10739 ATGGCTTCGCAAATCCTCAACGTCTTGGTTGCTACTTTCGGCGGCCTGGGCTTGCCCTCGACTCTCGTCGTACCA GTGTCGCACGCGACCACCGTCACCCGGCTACGGGAGGAGATCAACCACAGGCTGCCTGCAACCGACAGCAGACTC ATCTTGACGACACTGTCAAACAGACAACTTCCCGAGCGGTCGGAGGCTCCTATTTCCACGTATATCTCCACGAGC CACGATGAGTTTCTTTCCCTACGACTGGCCGTGCCGCTGTGCGGCGGCAAAGGAGGGTTCGGGTCGCAGCTTAGG GCTGCCGGAGGACGAATGTCGTCGCGCAAAAACCGAAACCAAGACGACCATGGGTCAAGCCGAAACCTCGACGGT CGAAGACTCCGGACGGTCAACGAAGCCAAGGCTTTGGCAGAATATCTTGCCATCAAGCCAGACATGGAGAAAAAG GAGAAGGAAAAGCGACGGAAGCGCTGGGAGCAGATTGTTCAAATGTCTGAGCAAAAAGAAACCGAGATAAGGTCA GGCAACACCGCCCGACTCGATGGCAAATGGGTTGAGGACAAGGAAGAGAGCAACGAGAAGACGCGAGACGCCGTA CTGGCTGCAATGAAGTCCGGAAACTACACAGACACTCTTCTGGGCACATCCAACGGCTCTACCTCCACGGATCGA GGTTCCAACCGCAGCAGCTCCAGTGGAGGGGATCGAGCTAGTTCCAAGGAGTTATCGCCAGCGTCAGACCGGGAA ACCACACAGAAGAGCAAACCGAGGACCTTTTTCGGGTTCGAGGAAGATGATGAGTTCATGACTTCCGAGGATGAG GACAGCGGAACGACGAGGGAATGA |
| Transcript | >Hirsu2|10739 ATGGCTTCGCAAATCCTCAACGTCTTGGTTGCTACTTTCGGCGGCCTGGGCTTGCCCTCGACTCTCGTCGTACCA GTGTCGCACGCGACCACCGTCACCCGGCTACGGGAGGAGATCAACCACAGGCTGCCTGCAACCGACAGCAGACTC ATCTTGACGACACTGTCAAACAGACAACTTCCCGAGCGGTCGGAGGCTCCTATTTCCACGTATATCTCCACGAGC CACGATGAGTTTCTTTCCCTACGACTGGCCGTGCCGCTGTGCGGCGGCAAAGGAGGGTTCGGGTCGCAGCTTAGG GCTGCCGGAGGACGAATGTCGTCGCGCAAAAACCGAAACCAAGACGACCATGGGTCAAGCCGAAACCTCGACGGT CGAAGACTCCGGACGGTCAACGAAGCCAAGGCTTTGGCAGAATATCTTGCCATCAAGCCAGACATGGAGAAAAAG GAGAAGGAAAAGCGACGGAAGCGCTGGGAGCAGATTGTTCAAATGTCTGAGCAAAAAGAAACCGAGATAAGGTCA GGCAACACCGCCCGACTCGATGGCAAATGGGTTGAGGACAAGGAAGAGAGCAACGAGAAGACGCGAGACGCCGTA CTGGCTGCAATGAAGTCCGGAAACTACACAGACACTCTTCTGGGCACATCCAACGGCTCTACCTCCACGGATCGA GGTTCCAACCGCAGCAGCTCCAGTGGAGGGGATCGAGCTAGTTCCAAGGAGTTATCGCCAGCGTCAGACCGGGAA ACCACACAGAAGAGCAAACCGAGGACCTTTTTCGGGTTCGAGGAAGATGATGAGTTCATGACTTCCGAGGATGAG GACAGCGGAACGACGAGGGAATGA |
| Gene | >Hirsu2|10739 ATGGCTTCGCAAATCCTCAACGTCTTGGTTGCTACTTTCGGCGGCCTGGGCTTGCCCTCGACTCTCGTCGTACCA GTGTCGCACGCGACCACCGTCACCCGGCTACGGGAGGAGATCAACCACAGGCTGCCTGCAACCGACAGCAGACTC ATCTTGACGACACTGTCAAACAGACAACTTCCCGAGCGGTCGGAGGCTCCTATTTCCACGTATATCTCCACGAGC CACGATGAGTTTCTTTCCCTACGACTGGCCGTGCCGCTGTGCGGCGGCAAAGGAGGGTTCGGGTCGCAGCTTAGG GCTGCCGGAGGACGAATGTCGTCGCGCAAAAACCGAAACCAAGACGACCATGGGTCAAGCCGAAACCTCGACGGT CGAAGACTCCGGACGGTCAACGAAGCCAAGGCTTTGGCAGAATATCTTGCCATCAAGCCAGACATGGAGAAAAAG GAGAAGGAAAAGCGACGGAAGCGCTGGGAGCAGATTGTTCAAATGTCTGAGCAAAAAGAAACCGAGATAAGGTCA GGCAACACCGCCCGACTCGATGGCAAATGGGTTGAGGACAAGGAAGAGAGCAACGAGAAGACGCGAGACGCCGTA CTGGCTGCAATGAAGTCCGGAAACTACACAGACACTCTTCTGGGCACATCCAACGGCTCTACCTCCACGGATCGA GGTTCCAACCGCAGCAGCTCCAGTGGAGGGGATCGAGCTAGTTCCAAGGAGTTATCGCCAGCGTCAGACCGGGAA ACCACACAGAAGAGCAAACCGAGGACCTTTTTCGGGTTCGAGGAAGATGATGAGTTCATGACTTCCGAGGATGAG GACAGCGGAACGACGAGGGAATGA |