Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|10739
Gene name
Location	Contig_9:9066..9915
Strand	+
Gene length (bp)	849
Transcript length (bp)	849
Coding sequence length (bp)	849
Protein length (aa)	283

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13019	Sde2_N_Ubi	Silencing defective 2 N-terminal ubiquitin domain	7.8E-69	7	168

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O14113\|SDE2_SCHPO	Telomere maintenance protein SDE2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sde2 PE=3 SV=1	29	200	2.0E-20
sp\|Q7T293\|SDE2_DANRE	Protein SDE2 homolog OS=Danio rerio GN=sde2 PE=2 SV=2	83	206	6.0E-12
sp\|Q07G43\|SDE2_XENTR	Protein SDE2 homolog OS=Xenopus tropicalis GN=sde2 PE=2 SV=1	86	156	3.0E-11
sp\|Q6IQ49\|SDE2_HUMAN	Protein SDE2 homolog OS=Homo sapiens GN=SDE2 PE=1 SV=1	66	208	4.0E-11
sp\|Q5RET9\|SDE2_PONAB	Protein SDE2 homolog OS=Pongo abelii GN=SDE2 PE=2 SV=1	66	208	7.0E-11

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O14113\|SDE2_SCHPO	Telomere maintenance protein SDE2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sde2 PE=3 SV=1	29	200	2.0E-20
sp\|Q7T293\|SDE2_DANRE	Protein SDE2 homolog OS=Danio rerio GN=sde2 PE=2 SV=2	83	206	6.0E-12
sp\|Q07G43\|SDE2_XENTR	Protein SDE2 homolog OS=Xenopus tropicalis GN=sde2 PE=2 SV=1	86	156	3.0E-11
sp\|Q6IQ49\|SDE2_HUMAN	Protein SDE2 homolog OS=Homo sapiens GN=SDE2 PE=1 SV=1	66	208	4.0E-11
sp\|Q5RET9\|SDE2_PONAB	Protein SDE2 homolog OS=Pongo abelii GN=SDE2 PE=2 SV=1	66	208	7.0E-11
sp\|Q6NRI5\|SDE2_XENLA	Protein SDE2 homolog OS=Xenopus laevis GN=sde2 PE=2 SV=1	88	156	8.0E-11
sp\|Q8K1J5\|SDE2_MOUSE	Protein SDE2 homolog OS=Mus musculus GN=Sde2 PE=1 SV=1	90	212	2.0E-08
sp\|Q5BJN8\|SDE2_RAT	Protein SDE2 homolog OS=Rattus norvegicus GN=Sde2 PE=1 SV=2	90	156	4.0E-08

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 18	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	5	27	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|10739 MASQILNVLVATFGGLGLPSTLVVPVSHATTVTRLREEINHRLPATDSRLILTTLSNRQLPERSEAPISTYISTS HDEFLSLRLAVPLCGGKGGFGSQLRAAGGRMSSRKNRNQDDHGSSRNLDGRRLRTVNEAKALAEYLAIKPDMEKK EKEKRRKRWEQIVQMSEQKETEIRSGNTARLDGKWVEDKEESNEKTRDAVLAAMKSGNYTDTLLGTSNGSTSTDR GSNRSSSSGGDRASSKELSPASDRETTQKSKPRTFFGFEEDDEFMTSEDEDSGTTRE*
Coding	>Hirsu2\|10739 ATGGCTTCGCAAATCCTCAACGTCTTGGTTGCTACTTTCGGCGGCCTGGGCTTGCCCTCGACTCTCGTCGTACCA GTGTCGCACGCGACCACCGTCACCCGGCTACGGGAGGAGATCAACCACAGGCTGCCTGCAACCGACAGCAGACTC ATCTTGACGACACTGTCAAACAGACAACTTCCCGAGCGGTCGGAGGCTCCTATTTCCACGTATATCTCCACGAGC CACGATGAGTTTCTTTCCCTACGACTGGCCGTGCCGCTGTGCGGCGGCAAAGGAGGGTTCGGGTCGCAGCTTAGG GCTGCCGGAGGACGAATGTCGTCGCGCAAAAACCGAAACCAAGACGACCATGGGTCAAGCCGAAACCTCGACGGT CGAAGACTCCGGACGGTCAACGAAGCCAAGGCTTTGGCAGAATATCTTGCCATCAAGCCAGACATGGAGAAAAAG GAGAAGGAAAAGCGACGGAAGCGCTGGGAGCAGATTGTTCAAATGTCTGAGCAAAAAGAAACCGAGATAAGGTCA GGCAACACCGCCCGACTCGATGGCAAATGGGTTGAGGACAAGGAAGAGAGCAACGAGAAGACGCGAGACGCCGTA CTGGCTGCAATGAAGTCCGGAAACTACACAGACACTCTTCTGGGCACATCCAACGGCTCTACCTCCACGGATCGA GGTTCCAACCGCAGCAGCTCCAGTGGAGGGGATCGAGCTAGTTCCAAGGAGTTATCGCCAGCGTCAGACCGGGAA ACCACACAGAAGAGCAAACCGAGGACCTTTTTCGGGTTCGAGGAAGATGATGAGTTCATGACTTCCGAGGATGAG GACAGCGGAACGACGAGGGAATGA
Transcript	>Hirsu2\|10739 ATGGCTTCGCAAATCCTCAACGTCTTGGTTGCTACTTTCGGCGGCCTGGGCTTGCCCTCGACTCTCGTCGTACCA GTGTCGCACGCGACCACCGTCACCCGGCTACGGGAGGAGATCAACCACAGGCTGCCTGCAACCGACAGCAGACTC ATCTTGACGACACTGTCAAACAGACAACTTCCCGAGCGGTCGGAGGCTCCTATTTCCACGTATATCTCCACGAGC CACGATGAGTTTCTTTCCCTACGACTGGCCGTGCCGCTGTGCGGCGGCAAAGGAGGGTTCGGGTCGCAGCTTAGG GCTGCCGGAGGACGAATGTCGTCGCGCAAAAACCGAAACCAAGACGACCATGGGTCAAGCCGAAACCTCGACGGT CGAAGACTCCGGACGGTCAACGAAGCCAAGGCTTTGGCAGAATATCTTGCCATCAAGCCAGACATGGAGAAAAAG GAGAAGGAAAAGCGACGGAAGCGCTGGGAGCAGATTGTTCAAATGTCTGAGCAAAAAGAAACCGAGATAAGGTCA GGCAACACCGCCCGACTCGATGGCAAATGGGTTGAGGACAAGGAAGAGAGCAACGAGAAGACGCGAGACGCCGTA CTGGCTGCAATGAAGTCCGGAAACTACACAGACACTCTTCTGGGCACATCCAACGGCTCTACCTCCACGGATCGA GGTTCCAACCGCAGCAGCTCCAGTGGAGGGGATCGAGCTAGTTCCAAGGAGTTATCGCCAGCGTCAGACCGGGAA ACCACACAGAAGAGCAAACCGAGGACCTTTTTCGGGTTCGAGGAAGATGATGAGTTCATGACTTCCGAGGATGAG GACAGCGGAACGACGAGGGAATGA
Gene	>Hirsu2\|10739 ATGGCTTCGCAAATCCTCAACGTCTTGGTTGCTACTTTCGGCGGCCTGGGCTTGCCCTCGACTCTCGTCGTACCA GTGTCGCACGCGACCACCGTCACCCGGCTACGGGAGGAGATCAACCACAGGCTGCCTGCAACCGACAGCAGACTC ATCTTGACGACACTGTCAAACAGACAACTTCCCGAGCGGTCGGAGGCTCCTATTTCCACGTATATCTCCACGAGC CACGATGAGTTTCTTTCCCTACGACTGGCCGTGCCGCTGTGCGGCGGCAAAGGAGGGTTCGGGTCGCAGCTTAGG GCTGCCGGAGGACGAATGTCGTCGCGCAAAAACCGAAACCAAGACGACCATGGGTCAAGCCGAAACCTCGACGGT CGAAGACTCCGGACGGTCAACGAAGCCAAGGCTTTGGCAGAATATCTTGCCATCAAGCCAGACATGGAGAAAAAG GAGAAGGAAAAGCGACGGAAGCGCTGGGAGCAGATTGTTCAAATGTCTGAGCAAAAAGAAACCGAGATAAGGTCA GGCAACACCGCCCGACTCGATGGCAAATGGGTTGAGGACAAGGAAGAGAGCAACGAGAAGACGCGAGACGCCGTA CTGGCTGCAATGAAGTCCGGAAACTACACAGACACTCTTCTGGGCACATCCAACGGCTCTACCTCCACGGATCGA GGTTCCAACCGCAGCAGCTCCAGTGGAGGGGATCGAGCTAGTTCCAAGGAGTTATCGCCAGCGTCAGACCGGGAA ACCACACAGAAGAGCAAACCGAGGACCTTTTTCGGGTTCGAGGAAGATGATGAGTTCATGACTTCCGAGGATGAG GACAGCGGAACGACGAGGGAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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