© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10715 |
| Gene name | |
| Location | Contig_895:7236..8425 |
| Strand | + |
| Gene length (bp) | 1189 |
| Transcript length (bp) | 1074 |
| Coding sequence length (bp) | 1074 |
| Protein length (aa) | 358 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 1.9E-09 | 23 | 73 |
| PF04193 | PQ-loop | PQ loop repeat | 1.5E-13 | 175 | 228 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14166|YDX3_SCHPO | Uncharacterized protein C4C5.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4C5.03 PE=4 SV=1 | 21 | 265 | 2.0E-32 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 38 | 18 |
| 2 | 51 | 73 | 22 |
| 3 | 97 | 119 | 22 |
| 4 | 145 | 167 | 22 |
| 5 | 172 | 191 | 19 |
| 6 | 203 | 225 | 22 |
| 7 | 235 | 257 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10715 MDFEALAQAECERLKSPSYLELIVSVLILVGLLISYLPQHYRIISRGTSEGISPYFVLLGTTSATAGFANILTVP PSRAAIGCCKELGTFECAAGLLGVAQLGVQWLCFTLILVLFLIFFRYREANVPQEELGGESPKWQVAVMVGLVCL LHGLAVVIVTGVFAIAVPSHLTAWANVLGVMAAVLAAIQYVPQIWMTYHLKHVGSLSIPMMCIQTPGGFLFAASL FARLGPAGWSTWVIYLMTAVMQGTVLALGVYYEIAARRHEGHGVEYPASVPHSPLERSGFPRRPSASRTYSEGWE RGLPGPFTGHPERYAETEEDLDHMQEREERAIARENQPLLRPGGIGNPRRNYDSSRS* |
| Coding | >Hirsu2|10715 ATGGACTTCGAGGCGCTGGCCCAGGCCGAGTGCGAGCGGCTCAAGTCGCCCTCGTACCTCGAGCTCATCGTCTCC GTACTGATCCTCGTCGGACTGCTGATATCGTACCTGCCGCAACACTACCGCATCATCTCCAGGGGCACCTCGGAG GGCATCTCGCCCTACTTCGTCCTCCTCGGAACGACGTCGGCCACGGCCGGCTTCGCCAACATCCTCACCGTCCCG CCGTCGCGCGCCGCCATCGGCTGCTGCAAGGAGCTGGGCACCTTTGAGTGCGCCGCCGGATTGCTGGGCGTCGCC CAGCTCGGCGTGCAGTGGCTGTGCTTCACCCTCATCCTCGTCCTCTTCCTCATCTTCTTCCGCTACCGCGAGGCC AACGTGCCGCAGGAGGAGCTGGGCGGCGAGTCGCCCAAGTGGCAGGTGGCCGTCATGGTCGGCCTCGTCTGTCTC CTCCACGGCCTGGCCGTCGTCATCGTCACCGGCGTCTTCGCCATCGCCGTGCCCAGCCACCTGACGGCCTGGGCC AACGTGCTGGGCGTCATGGCCGCCGTCCTGGCCGCGATCCAGTACGTGCCCCAGATCTGGATGACGTACCACCTC AAGCACGTCGGCAGCCTGAGCATCCCGATGATGTGCATCCAGACGCCGGGCGGCTTCCTCTTCGCCGCCAGCCTG TTCGCGAGGCTGGGGCCGGCCGGGTGGAGCACCTGGGTCATCTACCTGATGACGGCCGTCATGCAGGGCACCGTG CTGGCCCTCGGGGTCTACTACGAGATCGCGGCGCGGCGGCACGAGGGCCACGGCGTCGAATACCCGGCCAGCGTG CCGCACTCGCCGCTGGAGCGGTCGGGCTTCCCGCGGCGGCCGTCGGCGAGCCGGACCTACTCGGAAGGCTGGGAA CGCGGGCTGCCGGGGCCCTTTACCGGCCACCCGGAGCGCTACGCCGAGACGGAGGAGGACCTGGACCACATGCAG GAGCGCGAGGAGCGGGCGATTGCGAGGGAGAACCAGCCGCTGCTCCGGCCGGGCGGCATAGGCAACCCGCGCCGG AATTACGATTCGAGCCGCAGCTAA |
| Transcript | >Hirsu2|10715 ATGGACTTCGAGGCGCTGGCCCAGGCCGAGTGCGAGCGGCTCAAGTCGCCCTCGTACCTCGAGCTCATCGTCTCC GTACTGATCCTCGTCGGACTGCTGATATCGTACCTGCCGCAACACTACCGCATCATCTCCAGGGGCACCTCGGAG GGCATCTCGCCCTACTTCGTCCTCCTCGGAACGACGTCGGCCACGGCCGGCTTCGCCAACATCCTCACCGTCCCG CCGTCGCGCGCCGCCATCGGCTGCTGCAAGGAGCTGGGCACCTTTGAGTGCGCCGCCGGATTGCTGGGCGTCGCC CAGCTCGGCGTGCAGTGGCTGTGCTTCACCCTCATCCTCGTCCTCTTCCTCATCTTCTTCCGCTACCGCGAGGCC AACGTGCCGCAGGAGGAGCTGGGCGGCGAGTCGCCCAAGTGGCAGGTGGCCGTCATGGTCGGCCTCGTCTGTCTC CTCCACGGCCTGGCCGTCGTCATCGTCACCGGCGTCTTCGCCATCGCCGTGCCCAGCCACCTGACGGCCTGGGCC AACGTGCTGGGCGTCATGGCCGCCGTCCTGGCCGCGATCCAGTACGTGCCCCAGATCTGGATGACGTACCACCTC AAGCACGTCGGCAGCCTGAGCATCCCGATGATGTGCATCCAGACGCCGGGCGGCTTCCTCTTCGCCGCCAGCCTG TTCGCGAGGCTGGGGCCGGCCGGGTGGAGCACCTGGGTCATCTACCTGATGACGGCCGTCATGCAGGGCACCGTG CTGGCCCTCGGGGTCTACTACGAGATCGCGGCGCGGCGGCACGAGGGCCACGGCGTCGAATACCCGGCCAGCGTG CCGCACTCGCCGCTGGAGCGGTCGGGCTTCCCGCGGCGGCCGTCGGCGAGCCGGACCTACTCGGAAGGCTGGGAA CGCGGGCTGCCGGGGCCCTTTACCGGCCACCCGGAGCGCTACGCCGAGACGGAGGAGGACCTGGACCACATGCAG GAGCGCGAGGAGCGGGCGATTGCGAGGGAGAACCAGCCGCTGCTCCGGCCGGGCGGCATAGGCAACCCGCGCCGG AATTACGATTCGAGCCGCAGCTAA |
| Gene | >Hirsu2|10715 ATGGACTTCGAGGCGCTGGCCCAGGCCGAGTGCGAGCGGCTCAAGTCGCCCTCGTACCTCGAGCTCATCGTCTCC GTGTGCGCCCATTCCTGCCTTCCATCTCCGTTGACGCGCTTCGCTGACGACAGGCTAGACTGATCCTCGTCGGAC TGCTGATATCGTACCTGCCGCAACACTACCGCATCATCTCCAGGGGCACCTCGGAGGGCATCTCGCCCTACTTCG TCCTCCTCGGAACGACGTCGGCCACGGCCGGCTTCGCCAACATCCTCACCGTCCCGCCGTCGCGCGCCGCCATCG GCTGCTGCAAGGAGCTGGGCACCTTTGAGTGCGCCGCCGGATTGCTGGGCGTCGCCCAGCTCGGCGTGCAGTGGC TGTGCTTCACCCTCATGTAGGTGCCGGACGCGACGAGCCGACGCCCGCGACGCCGCTGACCCGCCCCGCCCGCAG CCTCGTCCTCTTCCTCATCTTCTTCCGCTACCGCGAGGCCAACGTGCCGCAGGAGGAGCTGGGCGGCGAGTCGCC CAAGTGGCAGGTGGCCGTCATGGTCGGCCTCGTCTGTCTCCTCCACGGCCTGGCCGTCGTCATCGTCACCGGCGT CTTCGCCATCGCCGTGCCCAGCCACCTGACGGCCTGGGCCAACGTGCTGGGCGTCATGGCCGCCGTCCTGGCCGC GATCCAGTACGTGCCCCAGATCTGGATGACGTACCACCTCAAGCACGTCGGCAGCCTGAGCATCCCGATGATGTG CATCCAGACGCCGGGCGGCTTCCTCTTCGCCGCCAGCCTGTTCGCGAGGCTGGGGCCGGCCGGGTGGAGCACCTG GGTCATCTACCTGATGACGGCCGTCATGCAGGGCACCGTGCTGGCCCTCGGGGTCTACTACGAGATCGCGGCGCG GCGGCACGAGGGCCACGGCGTCGAATACCCGGCCAGCGTGCCGCACTCGCCGCTGGAGCGGTCGGGCTTCCCGCG GCGGCCGTCGGCGAGCCGGACCTACTCGGAAGGCTGGGAACGCGGGCTGCCGGGGCCCTTTACCGGCCACCCGGA GCGCTACGCCGAGACGGAGGAGGACCTGGACCACATGCAGGAGCGCGAGGAGCGGGCGATTGCGAGGGAGAACCA GCCGCTGCTCCGGCCGGGCGGCATAGGCAACCCGCGCCGGAATTACGATTCGAGCCGCAGCTAA |