© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10706 |
| Gene name | |
| Location | Contig_893:6027..7572 |
| Strand | + |
| Gene length (bp) | 1545 |
| Transcript length (bp) | 1179 |
| Coding sequence length (bp) | 1179 |
| Protein length (aa) | 393 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03151 | TPT | Triose-phosphate Transporter family | 5.6E-16 | 59 | 330 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3E6T0|PT525_ARATH | Probable sugar phosphate/phosphate translocator At5g25400 OS=Arabidopsis thaliana GN=At5g25400 PE=2 SV=1 | 62 | 342 | 8.0E-48 |
| sp|Q9LFN3|PT511_ARATH | Probable sugar phosphate/phosphate translocator At5g11230 OS=Arabidopsis thaliana GN=At5g11230 PE=2 SV=1 | 62 | 335 | 3.0E-47 |
| sp|Q9SUV2|PT432_ARATH | Probable sugar phosphate/phosphate translocator At4g32390 OS=Arabidopsis thaliana GN=At4g32390 PE=3 SV=1 | 62 | 342 | 2.0E-46 |
| sp|Q9SKJ7|PT225_ARATH | Probable sugar phosphate/phosphate translocator At2g25520 OS=Arabidopsis thaliana GN=At2g25520 PE=1 SV=1 | 62 | 342 | 9.0E-45 |
| sp|Q9LRP2|PT317_ARATH | Probable sugar phosphate/phosphate translocator At3g17430 OS=Arabidopsis thaliana GN=At3g17430 PE=1 SV=1 | 73 | 341 | 8.0E-41 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3E6T0|PT525_ARATH | Probable sugar phosphate/phosphate translocator At5g25400 OS=Arabidopsis thaliana GN=At5g25400 PE=2 SV=1 | 62 | 342 | 8.0E-48 |
| sp|Q9LFN3|PT511_ARATH | Probable sugar phosphate/phosphate translocator At5g11230 OS=Arabidopsis thaliana GN=At5g11230 PE=2 SV=1 | 62 | 335 | 3.0E-47 |
| sp|Q9SUV2|PT432_ARATH | Probable sugar phosphate/phosphate translocator At4g32390 OS=Arabidopsis thaliana GN=At4g32390 PE=3 SV=1 | 62 | 342 | 2.0E-46 |
| sp|Q9SKJ7|PT225_ARATH | Probable sugar phosphate/phosphate translocator At2g25520 OS=Arabidopsis thaliana GN=At2g25520 PE=1 SV=1 | 62 | 342 | 9.0E-45 |
| sp|Q9LRP2|PT317_ARATH | Probable sugar phosphate/phosphate translocator At3g17430 OS=Arabidopsis thaliana GN=At3g17430 PE=1 SV=1 | 73 | 341 | 8.0E-41 |
| sp|Q9C8M1|PT153_ARATH | Probable sugar phosphate/phosphate translocator At1g53660 OS=Arabidopsis thaliana GN=At1g53660 PE=3 SV=2 | 73 | 330 | 8.0E-35 |
| sp|Q9LNH5|PT148_ARATH | Probable sugar phosphate/phosphate translocator At1g48230 OS=Arabidopsis thaliana GN=At1g48230 PE=2 SV=2 | 73 | 341 | 5.0E-34 |
| sp|Q94EI9|PT314_ARATH | Probable sugar phosphate/phosphate translocator At3g14410 OS=Arabidopsis thaliana GN=At3g14410 PE=2 SV=1 | 73 | 347 | 2.0E-33 |
| sp|Q9C521|UGAL1_ARATH | UDP-galactose transporter 1 OS=Arabidopsis thaliana GN=UDP-GALT1 PE=2 SV=1 | 52 | 340 | 5.0E-20 |
| sp|Q9LDH3|PT112_ARATH | Probable sugar phosphate/phosphate translocator At1g12500 OS=Arabidopsis thaliana GN=At1g12500 PE=1 SV=1 | 59 | 330 | 4.0E-19 |
| sp|Q9SFE9|GONS5_ARATH | GDP-mannose transporter GONST5 OS=Arabidopsis thaliana GN=GONST5 PE=2 SV=1 | 60 | 340 | 4.0E-19 |
| sp|Q9NQQ7|S35C2_HUMAN | Solute carrier family 35 member C2 OS=Homo sapiens GN=SLC35C2 PE=1 SV=2 | 75 | 326 | 2.0E-18 |
| sp|Q9FYE5|PT504_ARATH | Probable sugar phosphate/phosphate translocator At5g04160 OS=Arabidopsis thaliana GN=At5g04160 PE=2 SV=1 | 53 | 329 | 2.0E-16 |
| sp|Q6DBP3|PT505_ARATH | Probable sugar phosphate/phosphate translocator At5g05820 OS=Arabidopsis thaliana GN=At5g05820 PE=2 SV=1 | 61 | 330 | 5.0E-16 |
| sp|Q9SS40|PT310_ARATH | Probable sugar phosphate/phosphate translocator At3g10290 OS=Arabidopsis thaliana GN=At3g10290 PE=3 SV=1 | 61 | 329 | 5.0E-16 |
| sp|Q8VCX2|S35C2_MOUSE | Solute carrier family 35 member C2 OS=Mus musculus GN=Slc35c2 PE=1 SV=1 | 75 | 355 | 4.0E-15 |
| sp|Q5XF09|PT311_ARATH | Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana GN=At3g11320 PE=2 SV=1 | 52 | 330 | 2.0E-14 |
| sp|Q8H184|PT106_ARATH | Probable sugar phosphate/phosphate translocator At1g06470 OS=Arabidopsis thaliana GN=At1g06470 PE=2 SV=1 | 29 | 342 | 2.0E-13 |
| sp|Q10354|YDB1_SCHPO | Uncharacterized transporter C22E12.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22E12.01 PE=3 SV=2 | 60 | 344 | 6.0E-10 |
| sp|Q5VQL3|PPT3_ORYSJ | Phosphoenolpyruvate/phosphate translocator 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT3 PE=2 SV=1 | 50 | 330 | 3.0E-09 |
| sp|Q9FTT3|TPT_ORYSJ | Triose phosphate/phosphate translocator TPT, chloroplastic OS=Oryza sativa subsp. japonica GN=TPT PE=2 SV=1 | 19 | 342 | 8.0E-08 |
| sp|P0CK96|S352B_HUMAN | Solute carrier family 35 member E2B OS=Homo sapiens GN=SLC35E2B PE=2 SV=1 | 65 | 343 | 2.0E-07 |
| sp|P11869|TPT_SPIOL | Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1 | 44 | 344 | 3.0E-07 |
| sp|P52177|TPT1_BRAOB | Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1 | 42 | 341 | 7.0E-07 |
| sp|P21727|TPT_PEA | Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1 | 21 | 341 | 2.0E-06 |
| sp|Q9ZSR7|TPT_ARATH | Triose phosphate/phosphate translocator TPT, chloroplastic OS=Arabidopsis thaliana GN=TPT PE=1 SV=1 | 33 | 341 | 3.0E-06 |
| sp|P49132|TPT_FLATR | Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1 | 5 | 341 | 4.0E-06 |
| sp|P49131|TPT_FLAPR | Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1 | 5 | 344 | 4.0E-06 |
| sp|P49133|TPT_MAIZE | Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1 | 65 | 341 | 7.0E-06 |
| sp|Q84QU8|PPT2_ORYSJ | Phosphoenolpyruvate/phosphate translocator 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT2 PE=2 SV=1 | 37 | 330 | 8.0E-06 |
| sp|Q8RXL8|Y1689_ARATH | Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1 | 76 | 342 | 9.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
| 2 | 87 | 109 | 22 |
| 3 | 129 | 151 | 22 |
| 4 | 163 | 182 | 19 |
| 5 | 192 | 214 | 22 |
| 6 | 226 | 248 | 22 |
| 7 | 258 | 280 | 22 |
| 8 | 285 | 307 | 22 |
| 9 | 311 | 333 | 22 |
| 10 | 354 | 376 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10706 MAAPLDEGSSASPSPMPSRPPVLPVASCSSSPSAALAIGDKEAAALEGPGEARGGLHPALLIANWMFFSNLTIVF NKWIIDSAGFRYPVFLTCWHLVFSTKLCMTPSLYLRTVCPIGVLYSASLVCSNLAYLYLSVPFIQILKSSSPVAV LLASWAWRLADPSLGTLGNVLFVTAGIAVASVGEIHFSLTGFLYQIGGLVFGAVQLVMTELMLGARSLHAHPLVS LYYYAPVCAGTYLAVALVVELPVFDWADLVRVGPGMLLLNAMVAFALNFAGVFLISKTSSLVMALAGILKNILLI AASALIWKTQVTAMQAAGYSMALSGLVYYSFGYAQLAEAAQAVNVWTAAGLRPLRGCRLLLVGLVVLVALSILWI HGAEPRDGALPTSSAGS* |
| Coding | >Hirsu2|10706 ATGGCGGCCCCGCTGGACGAAGGCTCGTCGGCCTCGCCTTCGCCCATGCCGTCTCGGCCGCCCGTCCTCCCCGTC GCCTCCTGCTCTTCCTCGCCGTCGGCGGCGCTCGCGATCGGCGACAAGGAGGCGGCGGCGCTCGAGGGGCCCGGG GAGGCCCGAGGTGGGCTGCATCCGGCCCTGCTCATTGCCAACTGGATGTTCTTTTCGAACCTGACCATCGTCTTC AACAAGTGGATCATCGACTCCGCCGGCTTCAGATACCCCGTCTTCCTCACCTGCTGGCACCTCGTCTTCTCGACC AAGCTGTGCATGACGCCGTCTCTGTACCTGCGCACCGTCTGTCCCATCGGCGTCTTGTACTCGGCCTCGCTCGTC TGCTCGAACCTGGCGTACCTGTACCTCTCGGTGCCCTTCATCCAGATCCTCAAGTCGTCGTCGCCCGTCGCCGTC CTGCTCGCCTCGTGGGCGTGGCGGCTCGCCGACCCTAGCCTCGGCACGCTCGGCAACGTCCTGTTCGTCACGGCC GGCATCGCCGTGGCCTCGGTCGGCGAGATCCACTTCTCCCTGACCGGCTTCCTCTACCAGATCGGCGGCCTCGTC TTCGGGGCCGTGCAGCTCGTCATGACGGAGCTCATGCTCGGGGCCCGGTCCCTGCACGCCCACCCGCTCGTCAGC CTGTACTACTACGCGCCCGTCTGCGCCGGCACCTATCTCGCCGTCGCCCTGGTCGTCGAGCTGCCCGTCTTCGAC TGGGCCGACCTCGTCCGCGTCGGGCCCGGCATGCTACTTCTCAACGCCATGGTGGCCTTTGCGCTCAACTTTGCC GGCGTCTTCCTCATAAGCAAGACGTCCAGCCTCGTCATGGCCCTGGCCGGCATCCTCAAGAATATCCTTCTCATC GCCGCCTCGGCCCTCATCTGGAAGACCCAAGTCACCGCGATGCAGGCCGCCGGCTACTCCATGGCCTTGAGTGGT CTCGTCTACTACTCCTTCGGCTACGCGCAACTGGCGGAAGCCGCCCAGGCCGTCAATGTCTGGACCGCGGCCGGC CTCCGGCCTCTTCGCGGATGTAGGCTGCTTCTGGTCGGTCTCGTCGTGCTCGTTGCGCTTTCGATTCTTTGGATC CATGGCGCCGAGCCTCGGGACGGCGCTTTGCCGACATCCTCTGCCGGGTCCTAG |
| Transcript | >Hirsu2|10706 ATGGCGGCCCCGCTGGACGAAGGCTCGTCGGCCTCGCCTTCGCCCATGCCGTCTCGGCCGCCCGTCCTCCCCGTC GCCTCCTGCTCTTCCTCGCCGTCGGCGGCGCTCGCGATCGGCGACAAGGAGGCGGCGGCGCTCGAGGGGCCCGGG GAGGCCCGAGGTGGGCTGCATCCGGCCCTGCTCATTGCCAACTGGATGTTCTTTTCGAACCTGACCATCGTCTTC AACAAGTGGATCATCGACTCCGCCGGCTTCAGATACCCCGTCTTCCTCACCTGCTGGCACCTCGTCTTCTCGACC AAGCTGTGCATGACGCCGTCTCTGTACCTGCGCACCGTCTGTCCCATCGGCGTCTTGTACTCGGCCTCGCTCGTC TGCTCGAACCTGGCGTACCTGTACCTCTCGGTGCCCTTCATCCAGATCCTCAAGTCGTCGTCGCCCGTCGCCGTC CTGCTCGCCTCGTGGGCGTGGCGGCTCGCCGACCCTAGCCTCGGCACGCTCGGCAACGTCCTGTTCGTCACGGCC GGCATCGCCGTGGCCTCGGTCGGCGAGATCCACTTCTCCCTGACCGGCTTCCTCTACCAGATCGGCGGCCTCGTC TTCGGGGCCGTGCAGCTCGTCATGACGGAGCTCATGCTCGGGGCCCGGTCCCTGCACGCCCACCCGCTCGTCAGC CTGTACTACTACGCGCCCGTCTGCGCCGGCACCTATCTCGCCGTCGCCCTGGTCGTCGAGCTGCCCGTCTTCGAC TGGGCCGACCTCGTCCGCGTCGGGCCCGGCATGCTACTTCTCAACGCCATGGTGGCCTTTGCGCTCAACTTTGCC GGCGTCTTCCTCATAAGCAAGACGTCCAGCCTCGTCATGGCCCTGGCCGGCATCCTCAAGAATATCCTTCTCATC GCCGCCTCGGCCCTCATCTGGAAGACCCAAGTCACCGCGATGCAGGCCGCCGGCTACTCCATGGCCTTGAGTGGT CTCGTCTACTACTCCTTCGGCTACGCGCAACTGGCGGAAGCCGCCCAGGCCGTCAATGTCTGGACCGCGGCCGGC CTCCGGCCTCTTCGCGGATGTAGGCTGCTTCTGGTCGGTCTCGTCGTGCTCGTTGCGCTTTCGATTCTTTGGATC CATGGCGCCGAGCCTCGGGACGGCGCTTTGCCGACATCCTCTGCCGGGTCCTAG |
| Gene | >Hirsu2|10706 ATGGCGGCCCCGCTGGACGAAGGCTCGTCGGCCTCGCCTTCGCCCATGCCGTCTCGGCCGCCCGTCCTCCCCGTC GCCTCCTGCTCTTCCTCGCCGTCGGCGGCGCTCGCGATCGGCGACAAGGAGGCGGCGGCGCTCGAGGGGCCCGGG GAGGCCCGAGGTGGGCTGCATCCGGCCCTGCTCATTGCGTGCGTTGGCGCCCCTTCTTCAACCAGACGCAAGTGA CTTGGTCGTCGTGACGCTGACGATGAGACCGGCGGAACACACAGCAACTGGATGTTCTTTTCGAACCTGACCATC GTCTTCAACAAGTGGATCATCGACTCCGCCGGCTTCAGTGAGTACAGACGTCTGGCAACTGTGGCAACCCGGACA TGGCTGACCGCCCAGCAGGATACCGTACGTCTTCCACCGCTTTCTCCCATGGGGGGCCTCACGATACGTCGAAAC CGACGCCAGGCAGAACAAAGGGGGGGGGGGGAAGAAAGGAGTGTTGCTGACACCGCCTGCAGCCGTCTTCCTCAC CTGCTGGCACCTCGTCTTCTCGACCGTCGCGACGCAGAAACTTGGCCCGGACGACGGGGCTGATCCCGTGCCAGA AGCTGTGCATGACGCCGTCTCTGTACCTGCGCACCGTCTGTCCCATCGGCGTCTTGTACTCGGCCTCGCTCGTCT GCTCGAACCTGGCGTACCTGTACCTCTCGGTGCCCTTCATCCAGATCCTCAAGTCGTCGTCGCCCGTCGCCGTCC TGCTCGCCTCGTGGGCGTGGCGGCTCGCCGACCCTAGCCTCGGCACGCTCGGCAACGTCCTGTTCGTCACGGCCG GCATCGCCGTGGCCTCGGTCGGCGAGATCCACTTCTCCCTGACCGGCTTCCTCTACCAGATCGGCGGCCTCGTCT TCGGGGCCGTGCAGCTCGTCATGACGGAGCTCATGCTCGGGGCCCGGTCCCTGCACGCCCACCCGCTCGTCAGCC TGTACTACTACGCGCCCGTCTGCGCCGGCACCTATCTCGCCGTCGCCCTGGTCGTCGAGCTGCCCGTCTTCGACT GGGCCGACCTCGTCCGCGTCGGGCCCGGCATGCTACTTCTCAACGCCATGGTGGCCTTTGCGCTCAACTTTGCCG GCGTCTTCCTCGTGAGTGTGGTCTGGGCAGCGTCCTGTCGCCGCAGCGGCTCGTACGTGGCTGACGACGCCCTCG CAGATAAGCAAGACGTCCAGCCTCGTCATGGCCCTGGCCGGCATCCTCAAGAATATCCTTCTCATCGCCGCCTCG GCCCTCATCTGGAAGACCCAAGTCACCGCGATGCAGGCCGCCGGCTACTCCATGGCCTTGAGTGGTCTCGTCTAC TACTCCTTCGGCTACGCGCAACTGGCGGAAGCCGCCCAGGCCGTCAATGTCTGGACCGCGGCCGGCCTCCGGCCT CTTCGCGGATGTAGGCTGCTTCTGGTCGGTCTCGTCGTGCTCGTTGCGCTTTCGATTCTTTGGATCCATGGCGCC GAGCCTCGGGACGGCGCTTTGCCGACATCCTCTGCCGGGTCCTAG |