Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|10703
Gene name
Location	Contig_892:8844..9574
Strand	+
Gene length (bp)	730
Transcript length (bp)	660
Coding sequence length (bp)	660
Protein length (aa)	220

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF08229	SHR3_chaperone	ER membrane protein SH3	1.0E-74	19	217

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q02774\|SHR3_YEAST	Secretory component protein SHR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHR3 PE=1 SV=2	16	219	2.0E-25

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 52	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	20	42	22
2	75	97	22
3	104	126	22
4	164	182	18

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|10703 MGAYIDHSKTTKSKDYRGTGSFATFMIIGPTCFFLGILFASFPYDFPLLWTKDPVSDDYYDQLEAHLKFLHQSPP LIGRLLNIIVSVGFLGLFIKLFRPSEANFLFDGASLILYTIGVAVYISNIVKGLRTLSSGLWDSDEFRHNREGRF EGEFILGREDSLKVLAASNTILALVLIGVLVLQAGQWYAEKRDSDDEAAAAAEKTEPSPNSKAAAKKKQ*
Coding	>Hirsu2\|10703 ATGGGCGCCTACATCGACCACTCGAAGACGACCAAGTCCAAGGACTACCGCGGCACCGGGTCGTTTGCGACCTTT ATGATCATTGGGCCGACGTGCTTCTTCCTCGGCATCCTCTTCGCCTCCTTCCCCTACGACTTCCCCCTCCTCTGG ACCAAGGACCCGGTCAGCGACGACTACTATGACCAGCTGGAGGCGCACCTCAAGTTCCTGCACCAGTCGCCGCCG CTCATCGGCCGGCTGCTCAACATCATCGTCAGCGTCGGCTTCCTCGGCCTCTTCATCAAGCTCTTCCGGCCCAGC GAGGCCAACTTCCTGTTCGACGGCGCGTCGCTGATCCTCTACACCATCGGCGTCGCCGTCTACATCTCCAACATC GTCAAGGGCCTGCGCACCCTCAGCTCCGGCCTCTGGGACAGCGACGAGTTCCGGCACAACCGCGAGGGGCGCTTC GAGGGCGAGTTCATCCTCGGCCGCGAGGACAGCCTCAAGGTGCTGGCCGCCAGCAACACCATCCTGGCACTCGTC CTCATCGGCGTCCTCGTCCTCCAGGCCGGCCAGTGGTACGCGGAGAAGAGGGACTCGGACGACGAGGCCGCCGCC GCCGCCGAGAAGACGGAGCCGTCGCCCAACAGCAAGGCGGCCGCCAAGAAGAAGCAGTAG
Transcript	>Hirsu2\|10703 ATGGGCGCCTACATCGACCACTCGAAGACGACCAAGTCCAAGGACTACCGCGGCACCGGGTCGTTTGCGACCTTT ATGATCATTGGGCCGACGTGCTTCTTCCTCGGCATCCTCTTCGCCTCCTTCCCCTACGACTTCCCCCTCCTCTGG ACCAAGGACCCGGTCAGCGACGACTACTATGACCAGCTGGAGGCGCACCTCAAGTTCCTGCACCAGTCGCCGCCG CTCATCGGCCGGCTGCTCAACATCATCGTCAGCGTCGGCTTCCTCGGCCTCTTCATCAAGCTCTTCCGGCCCAGC GAGGCCAACTTCCTGTTCGACGGCGCGTCGCTGATCCTCTACACCATCGGCGTCGCCGTCTACATCTCCAACATC GTCAAGGGCCTGCGCACCCTCAGCTCCGGCCTCTGGGACAGCGACGAGTTCCGGCACAACCGCGAGGGGCGCTTC GAGGGCGAGTTCATCCTCGGCCGCGAGGACAGCCTCAAGGTGCTGGCCGCCAGCAACACCATCCTGGCACTCGTC CTCATCGGCGTCCTCGTCCTCCAGGCCGGCCAGTGGTACGCGGAGAAGAGGGACTCGGACGACGAGGCCGCCGCC GCCGCCGAGAAGACGGAGCCGTCGCCCAACAGCAAGGCGGCCGCCAAGAAGAAGCAGTAG
Gene	>Hirsu2\|10703 ATGGGCGCCTACATCGACCACTCGAAGACGACCAAGTCCAAGGACTACCGCGGCACCGGGTCGTTTGCGACCTTT ATGATCATTGGGCGTACGTGGGCCTTCCGCCACTGCTGCTTTCTTTGGCAGGGACCGGACGAATGCTGACTTGCC AATGCCAGCGACGTGCTTCTTCCTCGGCATCCTCTTCGCCTCCTTCCCCTACGACTTCCCCCTCCTCTGGACCAA GGACCCGGTCAGCGACGACTACTATGACCAGCTGGAGGCGCACCTCAAGTTCCTGCACCAGTCGCCGCCGCTCAT CGGCCGGCTGCTCAACATCATCGTCAGCGTCGGCTTCCTCGGCCTCTTCATCAAGCTCTTCCGGCCCAGCGAGGC CAACTTCCTGTTCGACGGCGCGTCGCTGATCCTCTACACCATCGGCGTCGCCGTCTACATCTCCAACATCGTCAA GGGCCTGCGCACCCTCAGCTCCGGCCTCTGGGACAGCGACGAGTTCCGGCACAACCGCGAGGGGCGCTTCGAGGG CGAGTTCATCCTCGGCCGCGAGGACAGCCTCAAGGTGCTGGCCGCCAGCAACACCATCCTGGCACTCGTCCTCAT CGGCGTCCTCGTCCTCCAGGCCGGCCAGTGGTACGCGGAGAAGAGGGACTCGGACGACGAGGCCGCCGCCGCCGC CGAGAAGACGGAGCCGTCGCCCAACAGCAAGGCGGCCGCCAAGAAGAAGCAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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