Protein ID | Hirsu2|10676 |
Gene name | |
Location | Contig_889:2005..3241 |
Strand | - |
Gene length (bp) | 1236 |
Transcript length (bp) | 1173 |
Coding sequence length (bp) | 1173 |
Protein length (aa) | 391 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00753 | Lactamase_B | Metallo-beta-lactamase superfamily | 4.0E-05 | 104 | 168 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.0835 | 0.0877 | 0.9565 | 0.0673 | 0.1127 | 0.0095 | 0.0541 | 0.1197 | 0.0556 | 0.0024 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 18 | 0.820747 |
Orthofinder run ID | 4 |
Orthogroup | 1318 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|10676 MRSGTCTTLLALAGGAAACIHGDALYARGPGPSIGSSARFVPSLWRRQNRNQVNIFFGQIQNVNVEMFGCFAGGS DDQDKIPRGIKPQSVNLGNEGFDPNLDLGVMVYYIKASQNSVFMFDTSTAKVLADSCNQALTQQTGFSVDNVILS HEHGDHVSGLGAQSLQGKGVIAQDSIIKNNGGGGGRNVALRQGQSQTFNMQDGVMNVTNVQAHTQLGTVAMINGL ALMGDESESTLNFLVSQNTQKQKAELDNTLAILNDNGIQQLLPAHGSGQAMFQGQFDLSLLQSNQAYLDTMAKQT QLVCPQNGNQQRKGRNQKRQNQQRQGSGRQQGAQQGGQQGGGQQVCQQNNLNGCKANLANAIGVQVNDITDAYFN SHINENCKTVAGKQN* |
Coding | >Hirsu2|10676 ATGCGGTCCGGAACCTGCACGACGCTGCTGGCCCTCGCCGGCGGCGCGGCCGCCTGCATACACGGCGACGCTCTC TACGCCCGCGGGCCGGGCCCCAGCATCGGCTCGTCTGCGCGATTCGTGCCCTCGCTGTGGAGGCGGCAAAACCGT AACCAGGTCAACATCTTCTTCGGCCAGATCCAGAACGTCAACGTCGAGATGTTTGGCTGCTTCGCCGGCGGCTCC GACGACCAGGACAAGATCCCGCGCGGAATCAAGCCCCAGTCGGTCAACCTGGGCAACGAGGGCTTCGACCCCAAT CTCGACCTGGGCGTCATGGTCTACTACATCAAGGCGTCGCAGAACTCCGTCTTCATGTTCGACACGTCGACGGCC AAGGTGCTCGCCGACAGCTGCAACCAGGCCTTGACGCAGCAGACGGGCTTCAGCGTGGACAATGTCATCCTCAGC CACGAGCACGGCGACCACGTCTCGGGCCTCGGCGCCCAAAGCCTGCAGGGCAAGGGCGTCATCGCGCAGGACTCG ATCATCAAGAACAACGGCGGCGGCGGCGGTCGCAACGTCGCCCTGCGGCAGGGCCAGTCGCAGACGTTCAACATG CAGGACGGCGTCATGAACGTCACCAACGTCCAGGCCCACACCCAGCTCGGGACCGTGGCCATGATCAACGGCCTC GCGCTGATGGGCGACGAGAGCGAGAGCACGCTCAACTTCCTCGTCAGCCAGAACACGCAGAAGCAGAAGGCCGAA CTCGACAACACCCTGGCGATTCTCAACGACAACGGCATCCAGCAGCTCCTGCCGGCCCACGGGAGCGGACAGGCC ATGTTCCAGGGCCAATTCGACCTCTCGCTGCTGCAGTCCAACCAGGCCTACCTCGACACCATGGCGAAGCAGACG CAGCTCGTCTGTCCGCAGAACGGGAACCAGCAGAGGAAGGGCCGGAACCAGAAGCGGCAGAACCAGCAGAGGCAG GGCTCCGGCCGGCAGCAGGGGGCCCAGCAGGGGGGCCAGCAGGGAGGCGGCCAGCAGGTCTGCCAGCAAAACAAC CTCAACGGCTGCAAGGCCAATCTGGCCAATGCCATCGGGGTCCAGGTAAACGACATCACGGATGCCTACTTCAAC TCGCACATCAACGAAAACTGCAAGACGGTGGCGGGAAAGCAAAACTAG |
Transcript | >Hirsu2|10676 ATGCGGTCCGGAACCTGCACGACGCTGCTGGCCCTCGCCGGCGGCGCGGCCGCCTGCATACACGGCGACGCTCTC TACGCCCGCGGGCCGGGCCCCAGCATCGGCTCGTCTGCGCGATTCGTGCCCTCGCTGTGGAGGCGGCAAAACCGT AACCAGGTCAACATCTTCTTCGGCCAGATCCAGAACGTCAACGTCGAGATGTTTGGCTGCTTCGCCGGCGGCTCC GACGACCAGGACAAGATCCCGCGCGGAATCAAGCCCCAGTCGGTCAACCTGGGCAACGAGGGCTTCGACCCCAAT CTCGACCTGGGCGTCATGGTCTACTACATCAAGGCGTCGCAGAACTCCGTCTTCATGTTCGACACGTCGACGGCC AAGGTGCTCGCCGACAGCTGCAACCAGGCCTTGACGCAGCAGACGGGCTTCAGCGTGGACAATGTCATCCTCAGC CACGAGCACGGCGACCACGTCTCGGGCCTCGGCGCCCAAAGCCTGCAGGGCAAGGGCGTCATCGCGCAGGACTCG ATCATCAAGAACAACGGCGGCGGCGGCGGTCGCAACGTCGCCCTGCGGCAGGGCCAGTCGCAGACGTTCAACATG CAGGACGGCGTCATGAACGTCACCAACGTCCAGGCCCACACCCAGCTCGGGACCGTGGCCATGATCAACGGCCTC GCGCTGATGGGCGACGAGAGCGAGAGCACGCTCAACTTCCTCGTCAGCCAGAACACGCAGAAGCAGAAGGCCGAA CTCGACAACACCCTGGCGATTCTCAACGACAACGGCATCCAGCAGCTCCTGCCGGCCCACGGGAGCGGACAGGCC ATGTTCCAGGGCCAATTCGACCTCTCGCTGCTGCAGTCCAACCAGGCCTACCTCGACACCATGGCGAAGCAGACG CAGCTCGTCTGTCCGCAGAACGGGAACCAGCAGAGGAAGGGCCGGAACCAGAAGCGGCAGAACCAGCAGAGGCAG GGCTCCGGCCGGCAGCAGGGGGCCCAGCAGGGGGGCCAGCAGGGAGGCGGCCAGCAGGTCTGCCAGCAAAACAAC CTCAACGGCTGCAAGGCCAATCTGGCCAATGCCATCGGGGTCCAGGTAAACGACATCACGGATGCCTACTTCAAC TCGCACATCAACGAAAACTGCAAGACGGTGGCGGGAAAGCAAAACTAG |
Gene | >Hirsu2|10676 ATGCGGTCCGGAACCTGCACGACGCTGCTGGCCCTCGCCGGCGGCGCGGCCGCCTGCATACACGGCGACGCTCTC TACGCCCGCGGGCCGGGCCCCAGCATCGGCTCGTCTGCGCGATTCGTGCCGTGAGTAGGCCATGCCAGCCAGTCT TCTTCGCCCGGCTTCCGACTGACCGAACCTGTCCCCAGCTCGCTGTGGAGGCGGCAAAACCGTAACCAGGTCAAC ATCTTCTTCGGCCAGATCCAGAACGTCAACGTCGAGATGTTTGGCTGCTTCGCCGGCGGCTCCGACGACCAGGAC AAGATCCCGCGCGGAATCAAGCCCCAGTCGGTCAACCTGGGCAACGAGGGCTTCGACCCCAATCTCGACCTGGGC GTCATGGTCTACTACATCAAGGCGTCGCAGAACTCCGTCTTCATGTTCGACACGTCGACGGCCAAGGTGCTCGCC GACAGCTGCAACCAGGCCTTGACGCAGCAGACGGGCTTCAGCGTGGACAATGTCATCCTCAGCCACGAGCACGGC GACCACGTCTCGGGCCTCGGCGCCCAAAGCCTGCAGGGCAAGGGCGTCATCGCGCAGGACTCGATCATCAAGAAC AACGGCGGCGGCGGCGGTCGCAACGTCGCCCTGCGGCAGGGCCAGTCGCAGACGTTCAACATGCAGGACGGCGTC ATGAACGTCACCAACGTCCAGGCCCACACCCAGCTCGGGACCGTGGCCATGATCAACGGCCTCGCGCTGATGGGC GACGAGAGCGAGAGCACGCTCAACTTCCTCGTCAGCCAGAACACGCAGAAGCAGAAGGCCGAACTCGACAACACC CTGGCGATTCTCAACGACAACGGCATCCAGCAGCTCCTGCCGGCCCACGGGAGCGGACAGGCCATGTTCCAGGGC CAATTCGACCTCTCGCTGCTGCAGTCCAACCAGGCCTACCTCGACACCATGGCGAAGCAGACGCAGCTCGTCTGT CCGCAGAACGGGAACCAGCAGAGGAAGGGCCGGAACCAGAAGCGGCAGAACCAGCAGAGGCAGGGCTCCGGCCGG CAGCAGGGGGCCCAGCAGGGGGGCCAGCAGGGAGGCGGCCAGCAGGTCTGCCAGCAAAACAACCTCAACGGCTGC AAGGCCAATCTGGCCAATGCCATCGGGGTCCAGGTAAACGACATCACGGATGCCTACTTCAACTCGCACATCAAC GAAAACTGCAAGACGGTGGCGGGAAAGCAAAACTAG |