Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|10641
Gene name
LocationContig_880:290..1140
Strand-
Gene length (bp)850
Transcript length (bp)642
Coding sequence length (bp)642
Protein length (aa) 214

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.9E-05 112 184

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O43120|UAP2_SCHPO Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uap2 PE=1 SV=1 79 207 6.0E-29
sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1 SV=1 9 185 3.0E-15
sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1 6 185 2.0E-14
sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2 SV=1 6 185 3.0E-14
sp|P53830|CUS2_YEAST Cold sensitive U2 snRNA suppressor 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUS2 PE=1 SV=1 108 184 6.0E-10
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O43120|UAP2_SCHPO Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uap2 PE=1 SV=1 79 207 6.0E-29
sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1 SV=1 9 185 3.0E-15
sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1 6 185 2.0E-14
sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2 SV=1 6 185 3.0E-14
sp|P53830|CUS2_YEAST Cold sensitive U2 snRNA suppressor 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUS2 PE=1 SV=1 108 184 6.0E-10
sp|Q94KD0|TA15B_ARATH Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana GN=TAF15B PE=1 SV=1 112 185 1.0E-06
[Show less]

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.1523 0.9505 0.0894 0.0096 0.0238 0.006 0.0431 0.0038 0.0068 0.0007

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup1308
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|5796
Ophiocordyceps australis map64 (Brazil) OphauB2|2167
Ophiocordyceps camponoti-floridani Ophcf2|07244
Ophiocordyceps camponoti-rufipedis Ophun1|5381
Ophiocordyceps kimflemingae Ophio5|2937
Ophiocordyceps subramaniannii Hirsu2|10641 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|10641
MDTEFPTNPDDFDKDERISFSKLEDRFIAVHDDGSEFEFDPKLKHWVPIDDDWEREFGRQPPLSPVPEAGERKRK
HRDSAEGAEDNLDPSAPAQRPRKKAKAPPKPKQNTAVYVTGLPTDATVDEIHDLFSRKGGLIAEEIDSRAPRIKL
YRDEAGDFKGDALVVFFKPDSVRMAIMLLDDTDFRYDAQGKGQGRMRVQEADSSYKKVQIGRR*
Coding >Hirsu2|10641
ATGGACACCGAATTCCCGACGAACCCGGACGATTTCGACAAGGACGAGCGGATTTCCTTCTCCAAGCTCGAGGAC
CGGTTCATCGCCGTGCACGACGATGGCTCCGAGTTCGAGTTCGACCCGAAGCTGAAGCATTGGGTCCCCATCGAC
GACGACTGGGAGCGCGAGTTCGGGCGCCAGCCACCCCTCTCGCCTGTGCCCGAGGCCGGCGAGAGGAAACGAAAG
CACCGCGACTCAGCGGAGGGAGCCGAGGACAACCTCGACCCGTCGGCGCCCGCGCAACGCCCGAGGAAGAAGGCC
AAGGCCCCGCCCAAGCCCAAGCAGAACACGGCCGTCTACGTGACCGGGCTGCCGACCGACGCGACCGTTGACGAG
ATCCACGACCTCTTCTCCCGCAAGGGCGGCCTCATCGCCGAAGAGATCGACAGCCGCGCCCCGCGGATCAAGCTG
TACAGGGACGAGGCCGGCGACTTCAAGGGCGACGCCCTCGTCGTATTCTTCAAGCCCGACAGCGTCAGGATGGCC
ATCATGCTGCTGGACGATACCGACTTCCGATACGACGCTCAGGGCAAGGGTCAGGGGAGGATGCGCGTCCAGGAG
GCGGATTCGAGCTACAAGAAGGTCCAGATCGGCAGAAGGTGA
Transcript >Hirsu2|10641
ATGGACACCGAATTCCCGACGAACCCGGACGATTTCGACAAGGACGAGCGGATTTCCTTCTCCAAGCTCGAGGAC
CGGTTCATCGCCGTGCACGACGATGGCTCCGAGTTCGAGTTCGACCCGAAGCTGAAGCATTGGGTCCCCATCGAC
GACGACTGGGAGCGCGAGTTCGGGCGCCAGCCACCCCTCTCGCCTGTGCCCGAGGCCGGCGAGAGGAAACGAAAG
CACCGCGACTCAGCGGAGGGAGCCGAGGACAACCTCGACCCGTCGGCGCCCGCGCAACGCCCGAGGAAGAAGGCC
AAGGCCCCGCCCAAGCCCAAGCAGAACACGGCCGTCTACGTGACCGGGCTGCCGACCGACGCGACCGTTGACGAG
ATCCACGACCTCTTCTCCCGCAAGGGCGGCCTCATCGCCGAAGAGATCGACAGCCGCGCCCCGCGGATCAAGCTG
TACAGGGACGAGGCCGGCGACTTCAAGGGCGACGCCCTCGTCGTATTCTTCAAGCCCGACAGCGTCAGGATGGCC
ATCATGCTGCTGGACGATACCGACTTCCGATACGACGCTCAGGGCAAGGGTCAGGGGAGGATGCGCGTCCAGGAG
GCGGATTCGAGCTACAAGAAGGTCCAGATCGGCAGAAGGTGA
Gene >Hirsu2|10641
ATGGACACCGAATTCCCGACGAACCCGGACGATTTCGACAAGGACGAGCGGATTTCCTTCTCCAAGCTCGAGGAC
CGGTTCATCGCCGTGCACGACGATGGCTCCGAGTTCGAGTTCGACCCGAAGCTGAAGCATTGGGTCCCCATCGAC
GACGACTGGGAGCGCGAGTTCGGGCGCCAGCCACCCCTCTCGCCTGTGCCCGAGGCCGGCGAGAGGAAACGAAAG
CACCGCGACTCAGCGGAGGGAGCCGAGGTGAGCGGCCGCGACCCGACCACGCGTGGCTGACTGTCGAGCGCTCGC
TCGCACCCGCGGCTCGAGAAATGGCTGGCTGGCCCGAAGCTAAACGTACATTGTGCCCCTCTTTCTCTCTCTCTC
TCTCACCAGGACAACCTCGACCCGTCGGCGCCCGCGCAACGCCCGAGGAAGAAGGCCAAGGCCCCGCCCAAGCCC
AAGCAGAACACGGCCGTCTACGTGACCGGGCTGCCGACCGACGCGACCGTTGACGAGATCCACGACCTCTTCTCC
CGCAAGGGCGGCCTCATCGCCGAAGAGATCGACAGCCGCGCCCCGCGGATCAAGCTGTACAGGGACGAGGCCGGC
GACTTCAAGGGCGACGCCCTCGTCGTATTCTTCAAGCCCGACAGCGTCAGGATGGCCATCATGCTGCTGGACGAT
ACCGACTTCCGATACGACGCTCAGGGCAAGGGTCAGGGGAGGATGCGCGTCCAGGAGGCGGATTCGAGCTACAAG
AAGGTCCAGTACGACCAGAACGGAGACGCCGCGGCCAAGGAGCCCGGCCAACAGGCCGAGGCCCGACGGCCGAGG
AGCGAAAAGGATCGGCAGAAGGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail