© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1062 |
| Gene name | |
| Location | Contig_122:13934..15016 |
| Strand | + |
| Gene length (bp) | 1082 |
| Transcript length (bp) | 957 |
| Coding sequence length (bp) | 957 |
| Protein length (aa) | 319 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01265 | Cyto_heme_lyase | Cytochrome c/c1 heme lyase | 1.1E-122 | 1 | 290 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P14187|CCHL_NEUCR | Cytochrome c heme lyase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyt-2 PE=3 SV=1 | 1 | 307 | 1.0E-126 |
| sp|P53700|CCHL_CANAW | Cytochrome c heme lyase OS=Candida albicans (strain WO-1) GN=CYC3 PE=3 SV=2 | 1 | 300 | 1.0E-56 |
| sp|P06182|CCHL_YEAST | Cytochrome c heme lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYC3 PE=1 SV=1 | 1 | 290 | 5.0E-48 |
| sp|O74794|CCHL_SCHPO | Putative cytochrome c heme lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC26H8.12 PE=3 SV=1 | 27 | 299 | 6.0E-44 |
| sp|P53703|CCHL_CAEEL | Probable cytochrome c-type heme lyase OS=Caenorhabditis elegans GN=cchl-1 PE=3 SV=1 | 72 | 282 | 4.0E-32 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P14187|CCHL_NEUCR | Cytochrome c heme lyase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyt-2 PE=3 SV=1 | 1 | 307 | 1.0E-126 |
| sp|P53700|CCHL_CANAW | Cytochrome c heme lyase OS=Candida albicans (strain WO-1) GN=CYC3 PE=3 SV=2 | 1 | 300 | 1.0E-56 |
| sp|P06182|CCHL_YEAST | Cytochrome c heme lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYC3 PE=1 SV=1 | 1 | 290 | 5.0E-48 |
| sp|O74794|CCHL_SCHPO | Putative cytochrome c heme lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC26H8.12 PE=3 SV=1 | 27 | 299 | 6.0E-44 |
| sp|P53703|CCHL_CAEEL | Probable cytochrome c-type heme lyase OS=Caenorhabditis elegans GN=cchl-1 PE=3 SV=1 | 72 | 282 | 4.0E-32 |
| sp|Q5F339|CCHL_CHICK | Cytochrome c-type heme lyase OS=Gallus gallus GN=HCCS PE=2 SV=1 | 26 | 284 | 8.0E-31 |
| sp|Q552W5|CCHL_DICDI | Probable cytochrome c-type heme lyase OS=Dictyostelium discoideum GN=cchl PE=3 SV=1 | 70 | 290 | 8.0E-30 |
| sp|P53702|CCHL_MOUSE | Cytochrome c-type heme lyase OS=Mus musculus GN=Hccs PE=1 SV=2 | 13 | 284 | 8.0E-30 |
| sp|A5PJG7|CCHL_BOVIN | Cytochrome c-type heme lyase OS=Bos taurus GN=HCCS PE=2 SV=1 | 25 | 284 | 1.0E-28 |
| sp|P53701|CCHL_HUMAN | Cytochrome c-type heme lyase OS=Homo sapiens GN=HCCS PE=1 SV=1 | 9 | 284 | 4.0E-28 |
| sp|O13962|YE42_SCHPO | Putative cytochrome c1 heme lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24C9.02c PE=3 SV=1 | 96 | 293 | 7.0E-27 |
| sp|Q00873|CYT2_YEAST | Cytochrome c1 heme lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYT2 PE=3 SV=1 | 82 | 276 | 2.0E-20 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005739 | mitochondrion | Yes |
| GO:0004408 | holocytochrome-c synthase activity | Yes |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0003824 | catalytic activity | No |
| GO:0016829 | lyase activity | No |
| GO:0016846 | carbon-sulfur lyase activity | No |
| GO:0043226 | organelle | No |
| GO:0043229 | intracellular organelle | No |
| GO:0005575 | cellular_component | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0003674 | molecular_function | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Mitochondrion | Mitochondrial transit peptide | 0.4905 | 0.1391 | 0.0538 | 0.2547 | 0.6581 | 0.1826 | 0.5182 | 0.5317 | 0.5313 | 0.2572 |
| Orthofinder run ID | 4 |
| Orthogroup | 480 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1062 MGWFWADVAPTAAHSPSGYPAVLRNGCPMNQKSLDALNPEQASRTSAPGPSPSSCPVPQASRTDEKPKSVLSQLN PLNYMFRDLSQKPAPNQTLALPTSREESTIPKGSGDGTWEYPSPQQMYNALLRKGYTDTDITAVESMVSVHNFLN EGAWAEIVGWEQRFSRGLYKGWQVCRRGEAHTGEELERHWDGNESQPTLVRFQGRPQDMTPKAAMLQVLGWIYPS KFGTEPPFDRHDWYVSRDVNGERRQIRYVIDYYSGEPEPTGEPVFYLDVRPSATPLGATERIIRWGSDVWWKAIG GDKREQDPKPFFNFKPWG* |
| Coding | >Hirsu2|1062 ATGGGCTGGTTCTGGGCCGACGTTGCCCCTACTGCGGCACACTCGCCGAGCGGCTATCCCGCCGTGCTTCGGAAC GGCTGCCCCATGAACCAGAAGTCGCTCGATGCCCTGAACCCAGAGCAAGCGTCCCGTACATCCGCCCCGGGCCCA TCACCCTCGAGCTGCCCCGTTCCCCAAGCATCCCGCACCGACGAGAAGCCCAAGTCGGTCCTGTCTCAGCTGAAT CCCCTCAACTACATGTTCCGCGACCTCTCGCAGAAGCCCGCTCCGAACCAGACGCTTGCGCTGCCGACGTCACGC GAGGAGTCGACCATCCCCAAGGGATCCGGCGACGGGACCTGGGAGTATCCGTCACCGCAACAGATGTACAACGCT TTGCTGCGCAAAGGCTACACCGACACCGACATCACCGCCGTCGAGTCCATGGTCTCGGTACACAACTTTCTCAAC GAGGGCGCTTGGGCAGAGATTGTAGGATGGGAGCAGCGCTTCTCCAGGGGGCTCTACAAGGGCTGGCAGGTGTGC CGGCGAGGAGAGGCCCACACAGGCGAGGAGCTGGAACGGCACTGGGACGGGAACGAGAGCCAGCCCACGCTCGTC CGCTTCCAGGGAAGACCTCAGGACATGACTCCCAAGGCTGCCATGCTGCAGGTCCTGGGCTGGATTTACCCGTCC AAGTTCGGGACTGAGCCCCCCTTCGACCGACACGACTGGTACGTCTCTCGAGATGTCAACGGCGAGCGCAGACAG ATTCGCTACGTCATCGACTACTATTCTGGAGAGCCCGAGCCAACGGGCGAGCCCGTCTTCTACCTCGACGTTCGG CCATCAGCCACACCCCTCGGTGCGACCGAGAGAATAATTCGATGGGGGAGCGACGTTTGGTGGAAGGCAATCGGC GGCGATAAGCGGGAACAGGATCCGAAACCGTTCTTCAACTTCAAGCCTTGGGGATGA |
| Transcript | >Hirsu2|1062 ATGGGCTGGTTCTGGGCCGACGTTGCCCCTACTGCGGCACACTCGCCGAGCGGCTATCCCGCCGTGCTTCGGAAC GGCTGCCCCATGAACCAGAAGTCGCTCGATGCCCTGAACCCAGAGCAAGCGTCCCGTACATCCGCCCCGGGCCCA TCACCCTCGAGCTGCCCCGTTCCCCAAGCATCCCGCACCGACGAGAAGCCCAAGTCGGTCCTGTCTCAGCTGAAT CCCCTCAACTACATGTTCCGCGACCTCTCGCAGAAGCCCGCTCCGAACCAGACGCTTGCGCTGCCGACGTCACGC GAGGAGTCGACCATCCCCAAGGGATCCGGCGACGGGACCTGGGAGTATCCGTCACCGCAACAGATGTACAACGCT TTGCTGCGCAAAGGCTACACCGACACCGACATCACCGCCGTCGAGTCCATGGTCTCGGTACACAACTTTCTCAAC GAGGGCGCTTGGGCAGAGATTGTAGGATGGGAGCAGCGCTTCTCCAGGGGGCTCTACAAGGGCTGGCAGGTGTGC CGGCGAGGAGAGGCCCACACAGGCGAGGAGCTGGAACGGCACTGGGACGGGAACGAGAGCCAGCCCACGCTCGTC CGCTTCCAGGGAAGACCTCAGGACATGACTCCCAAGGCTGCCATGCTGCAGGTCCTGGGCTGGATTTACCCGTCC AAGTTCGGGACTGAGCCCCCCTTCGACCGACACGACTGGTACGTCTCTCGAGATGTCAACGGCGAGCGCAGACAG ATTCGCTACGTCATCGACTACTATTCTGGAGAGCCCGAGCCAACGGGCGAGCCCGTCTTCTACCTCGACGTTCGG CCATCAGCCACACCCCTCGGTGCGACCGAGAGAATAATTCGATGGGGGAGCGACGTTTGGTGGAAGGCAATCGGC GGCGATAAGCGGGAACAGGATCCGAAACCGTTCTTCAACTTCAAGCCTTGGGGATGA |
| Gene | >Hirsu2|1062 ATGGGCTGGTTCTGGGCCGACGTTGCCCCTACTGCGGCACACTCGCCGAGCGGCTATCCCGCCGTGCTTCGGGTG AGCGGCAGAAGCCACACAATGCGCGCGTTTCACCCCGTCGCTGACCTCGACAGAACGGCTGCCCCATGAACCAGA AGTCGCTCGATGCCCTGAACCCAGAGCAAGCGTCCCGTACATCCGCCCCGGGCCCATCACCCTCGAGCTGCCCCG TTCCCCAAGCATCCCGCACCGACGAGAAGCCCAAGTCGGTCCTGTCTCAGCTGAATCCCCTCAACTACATGTTCC GCGACCTCTCGCAGAAGCCCGCTCCGAACCAGACGCTTGCGCTGCCGACGTCACGCGAGGAGTCGACCATCCCCA AGGGATCCGGCGACGGGACCTGGGAGTATCCGTCACCGCAACAGATGTACAACGCTTTGCTGCGCAAAGGCTACA CCGACACCGACATCACCGCCGTCGAGTCCATGGTCTCGGTACACAACTTTCTCAACGAGGGCGCTTGGGCAGAGA TTGTAGGATGGGAGCAGCGCTTCTCCAGGGGGCTCTACAAGGGCTGGCAGGTGTGCCGGCGAGGAGAGGCCCACA CAGGCGAGGAGCTGGAACGGCACTGGGACGGGAACGAGAGCCAGCCCACGCTCGTCCGCTTCCAGGGAAGACCTC AGGACATGACTCCCAAGGCTGCCATGCTGCAGGTCCTGGGCTGGATTTACCCGTCCAAGTTCGGGTAGGCTCGGC TTCTCCAGCACCCTCTCTACCTAGACGCGGCCATCAGGCTAACAGAGAACAACGGCAGGACTGAGCCCCCCTTCG ACCGACACGACTGGTACGTCTCTCGAGATGTCAACGGCGAGCGCAGACAGATTCGCTACGTCATCGACTACTATT CTGGAGAGCCCGAGCCAACGGGCGAGCCCGTCTTCTACCTCGACGTTCGGCCATCAGCCACACCCCTCGGTGCGA CCGAGAGAATAATTCGATGGGGGAGCGACGTTTGGTGGAAGGCAATCGGCGGCGATAAGCGGGAACAGGATCCGA AACCGTTCTTCAACTTCAAGCCTTGGGGATGA |