© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10619 |
| Gene name | |
| Location | Contig_877:8466..10772 |
| Strand | + |
| Gene length (bp) | 2306 |
| Transcript length (bp) | 2025 |
| Coding sequence length (bp) | 2025 |
| Protein length (aa) | 675 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.0E-09 | 379 | 442 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10145|YAS9_SCHPO | Uncharacterized RNA-binding protein C3H8.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.09c PE=3 SV=1 | 351 | 644 | 1.0E-27 |
| sp|P38996|NAB3_YEAST | Nuclear polyadenylated RNA-binding protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAB3 PE=1 SV=1 | 368 | 645 | 3.0E-13 |
| sp|Q9UKM9|RALY_HUMAN | RNA-binding protein Raly OS=Homo sapiens GN=RALY PE=1 SV=1 | 377 | 446 | 6.0E-07 |
| sp|Q23121|RSP1_CAEEL | Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis elegans GN=rsp-1 PE=3 SV=1 | 377 | 447 | 8.0E-07 |
| sp|Q64012|RALY_MOUSE | RNA-binding protein Raly OS=Mus musculus GN=Raly PE=1 SV=3 | 377 | 446 | 2.0E-06 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10145|YAS9_SCHPO | Uncharacterized RNA-binding protein C3H8.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.09c PE=3 SV=1 | 351 | 644 | 1.0E-27 |
| sp|P38996|NAB3_YEAST | Nuclear polyadenylated RNA-binding protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAB3 PE=1 SV=1 | 368 | 645 | 3.0E-13 |
| sp|Q9UKM9|RALY_HUMAN | RNA-binding protein Raly OS=Homo sapiens GN=RALY PE=1 SV=1 | 377 | 446 | 6.0E-07 |
| sp|Q23121|RSP1_CAEEL | Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis elegans GN=rsp-1 PE=3 SV=1 | 377 | 447 | 8.0E-07 |
| sp|Q64012|RALY_MOUSE | RNA-binding protein Raly OS=Mus musculus GN=Raly PE=1 SV=3 | 377 | 446 | 2.0E-06 |
| sp|Q13247|SRSF6_HUMAN | Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6 PE=1 SV=2 | 378 | 447 | 3.0E-06 |
| sp|Q9FYB7|RSZ32_ARATH | Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana GN=RS2Z32 PE=1 SV=1 | 377 | 457 | 5.0E-06 |
| sp|Q3B7L6|SRSF6_BOVIN | Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2 SV=1 | 378 | 447 | 6.0E-06 |
| sp|Q8VYA5|RSZ33_ARATH | Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana GN=RS2Z33 PE=1 SV=1 | 377 | 455 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.4624 | 0.9041 | 0.1203 | 0.0214 | 0.0498 | 0.0038 | 0.0786 | 0.0136 | 0.0037 | 0.0068 |
| Orthofinder run ID | 4 |
| Orthogroup | 1304 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10619 MTDPEAEVQATANLSPVSPAPVHTAAPRVVPALQDTVDTIDAMVSAAAAAAAAAAADTAAPNGVAGFDTAMLADA ASANDLVDDDSLDDAYADDDDAASAPDTGLQPQPELPDSNDDYAKTFDSPMDPEEGGEQGHHPPQHISAAPTTTA AADAAVAAAAAQGTASPSEARADPSMEPSDPPAGPQQPDAAANSESAYAESQDSSVDIQKLVADLTAQPTEASSD AAPSPPPVAATKAEPPLGSAPLSSSISLPAASSLPPRPPQPQSGAQTYTSQQHAAGPSPTAAVVPSAGTVPPTTS GFVSEPASSLPAPPAAGLNAASAAAPLNAPAHTFQTAPGYSKDGEPDADYQRQWEQFMSDERQYMSDAKWDRFPE GSRIFIGNLSSDKVSKRDVFDVFYKYGRLAQISLKSAYGFVQYHAVDEGRQAMENLQGIEIKGRRIHLEVSRVQD KGKKDRGRSNDRASRRRGEKHQHHQGRDDYRPGRNSPRRNDYHARDENFGRSRGYESARGAGRGRSRSPEYGRND RDSYRRRSPSPYGRGRHEAELDLPRRYGADVPDVQIILQPEVNRDFVTWVEAAFKAKGLKTEVMYLHPRFPKDQI IQRQAAEGVYGVVDLDLRAQGLGRIPVQAFDRSGAGSNVRFDQYLRTELLGRRRRVPGRVRRAAPAAAPRRRLS* |
| Coding | >Hirsu2|10619 ATGACAGACCCGGAAGCTGAAGTCCAGGCCACCGCCAACCTCTCCCCCGTGTCGCCCGCGCCAGTCCATACAGCC GCCCCTCGCGTCGTGCCGGCGCTGCAGGATACTGTCGACACCATCGACGCCATGGTTTCTGCCGCCGCCGCTGCT GCTGCTGCCGCTGCCGCCGACACCGCCGCGCCCAACGGCGTTGCTGGCTTTGACACAGCCATGCTCGCCGATGCC GCCTCGGCCAACGACCTTGTAGATGATGACAGCCTTGACGACGCCTATGCCGACGACGACGACGCCGCCTCAGCC CCCGACACGGGCCTCCAGCCTCAGCCGGAGCTGCCTGACAGCAACGACGACTATGCCAAGACCTTCGACTCGCCC ATGGATCCAGAGGAAGGGGGCGAACAGGGCCATCATCCGCCGCAGCATATCTCTGCGGCTCCTACCACCACCGCT GCCGCCGACGCCGCCGTCGCCGCCGCCGCCGCGCAAGGCACTGCTTCCCCGTCCGAAGCGCGGGCAGACCCGTCG ATGGAACCCTCGGACCCGCCGGCCGGACCCCAACAGCCCGATGCCGCTGCCAACTCCGAGTCCGCCTACGCCGAG TCCCAGGACTCGTCGGTGGACATCCAGAAGCTCGTGGCCGACCTGACCGCCCAGCCCACCGAGGCCAGCTCCGAT GCCGCGCCGTCGCCCCCGCCCGTTGCTGCTACAAAGGCCGAGCCGCCTCTCGGTTCCGCTCCTCTGTCCTCCTCC ATATCCTTGCCCGCGGCCTCCTCGCTGCCGCCGCGGCCTCCACAGCCGCAGTCGGGTGCCCAAACGTATACCTCG CAGCAACACGCCGCAGGACCCAGTCCCACTGCCGCCGTTGTCCCCAGTGCCGGCACCGTACCGCCGACGACCTCG GGTTTCGTCTCGGAGCCCGCCAGCAGTCTTCCGGCCCCCCCCGCCGCAGGTTTGAACGCGGCCTCCGCCGCCGCC CCTTTGAATGCCCCAGCCCACACATTCCAGACGGCCCCGGGCTACTCCAAGGACGGGGAGCCCGACGCCGACTAC CAGCGCCAGTGGGAGCAGTTCATGTCTGATGAACGCCAGTACATGTCCGATGCGAAATGGGACCGCTTTCCCGAA GGATCCCGCATCTTCATCGGCAACCTTTCCAGTGACAAGGTTTCGAAGCGAGACGTCTTTGATGTCTTCTACAAG TACGGAAGACTGGCGCAGATCTCTCTCAAGTCGGCATACGGCTTCGTGCAGTATCACGCCGTCGACGAGGGCCGC CAGGCCATGGAAAACCTACAAGGCATCGAGATCAAGGGCCGCCGCATCCATCTTGAAGTTTCCCGAGTGCAGGAC AAGGGGAAGAAGGATCGTGGCCGCAGCAACGATCGAGCGAGTCGCCGACGAGGCGAAAAACACCAGCACCACCAG GGCCGCGATGACTACAGGCCCGGGCGCAACTCGCCGCGACGCAACGACTACCATGCAAGAGATGAAAACTTTGGC CGATCTCGGGGCTATGAGTCGGCTCGAGGGGCAGGACGCGGCCGTTCGCGCTCGCCCGAGTACGGCCGCAACGAC AGAGACTCGTACAGACGACGCAGCCCCAGCCCGTACGGTCGAGGTCGACACGAGGCGGAACTCGACCTGCCCCGT AGGTACGGCGCCGATGTCCCCGACGTGCAGATCATCCTGCAGCCTGAGGTCAACCGCGACTTCGTGACCTGGGTC GAGGCCGCTTTCAAGGCCAAGGGGCTCAAGACCGAAGTCATGTACCTCCACCCCCGTTTCCCCAAGGACCAGATC ATCCAGCGTCAGGCGGCGGAAGGCGTCTACGGCGTCGTAGACCTGGACCTGCGTGCCCAGGGCCTCGGCAGGATA CCCGTGCAGGCATTCGACCGCTCCGGCGCCGGCAGCAACGTCCGCTTCGACCAGTATCTTCGGACAGAGCTACTC GGCCGCCGCCGGCGGGTACCCGGGCGCGTTCGCCGCGCCGCACCAGCAGCCGCCCCACGGCGCCGGCTATCCTAA |
| Transcript | >Hirsu2|10619 ATGACAGACCCGGAAGCTGAAGTCCAGGCCACCGCCAACCTCTCCCCCGTGTCGCCCGCGCCAGTCCATACAGCC GCCCCTCGCGTCGTGCCGGCGCTGCAGGATACTGTCGACACCATCGACGCCATGGTTTCTGCCGCCGCCGCTGCT GCTGCTGCCGCTGCCGCCGACACCGCCGCGCCCAACGGCGTTGCTGGCTTTGACACAGCCATGCTCGCCGATGCC GCCTCGGCCAACGACCTTGTAGATGATGACAGCCTTGACGACGCCTATGCCGACGACGACGACGCCGCCTCAGCC CCCGACACGGGCCTCCAGCCTCAGCCGGAGCTGCCTGACAGCAACGACGACTATGCCAAGACCTTCGACTCGCCC ATGGATCCAGAGGAAGGGGGCGAACAGGGCCATCATCCGCCGCAGCATATCTCTGCGGCTCCTACCACCACCGCT GCCGCCGACGCCGCCGTCGCCGCCGCCGCCGCGCAAGGCACTGCTTCCCCGTCCGAAGCGCGGGCAGACCCGTCG ATGGAACCCTCGGACCCGCCGGCCGGACCCCAACAGCCCGATGCCGCTGCCAACTCCGAGTCCGCCTACGCCGAG TCCCAGGACTCGTCGGTGGACATCCAGAAGCTCGTGGCCGACCTGACCGCCCAGCCCACCGAGGCCAGCTCCGAT GCCGCGCCGTCGCCCCCGCCCGTTGCTGCTACAAAGGCCGAGCCGCCTCTCGGTTCCGCTCCTCTGTCCTCCTCC ATATCCTTGCCCGCGGCCTCCTCGCTGCCGCCGCGGCCTCCACAGCCGCAGTCGGGTGCCCAAACGTATACCTCG CAGCAACACGCCGCAGGACCCAGTCCCACTGCCGCCGTTGTCCCCAGTGCCGGCACCGTACCGCCGACGACCTCG GGTTTCGTCTCGGAGCCCGCCAGCAGTCTTCCGGCCCCCCCCGCCGCAGGTTTGAACGCGGCCTCCGCCGCCGCC CCTTTGAATGCCCCAGCCCACACATTCCAGACGGCCCCGGGCTACTCCAAGGACGGGGAGCCCGACGCCGACTAC CAGCGCCAGTGGGAGCAGTTCATGTCTGATGAACGCCAGTACATGTCCGATGCGAAATGGGACCGCTTTCCCGAA GGATCCCGCATCTTCATCGGCAACCTTTCCAGTGACAAGGTTTCGAAGCGAGACGTCTTTGATGTCTTCTACAAG TACGGAAGACTGGCGCAGATCTCTCTCAAGTCGGCATACGGCTTCGTGCAGTATCACGCCGTCGACGAGGGCCGC CAGGCCATGGAAAACCTACAAGGCATCGAGATCAAGGGCCGCCGCATCCATCTTGAAGTTTCCCGAGTGCAGGAC AAGGGGAAGAAGGATCGTGGCCGCAGCAACGATCGAGCGAGTCGCCGACGAGGCGAAAAACACCAGCACCACCAG GGCCGCGATGACTACAGGCCCGGGCGCAACTCGCCGCGACGCAACGACTACCATGCAAGAGATGAAAACTTTGGC CGATCTCGGGGCTATGAGTCGGCTCGAGGGGCAGGACGCGGCCGTTCGCGCTCGCCCGAGTACGGCCGCAACGAC AGAGACTCGTACAGACGACGCAGCCCCAGCCCGTACGGTCGAGGTCGACACGAGGCGGAACTCGACCTGCCCCGT AGGTACGGCGCCGATGTCCCCGACGTGCAGATCATCCTGCAGCCTGAGGTCAACCGCGACTTCGTGACCTGGGTC GAGGCCGCTTTCAAGGCCAAGGGGCTCAAGACCGAAGTCATGTACCTCCACCCCCGTTTCCCCAAGGACCAGATC ATCCAGCGTCAGGCGGCGGAAGGCGTCTACGGCGTCGTAGACCTGGACCTGCGTGCCCAGGGCCTCGGCAGGATA CCCGTGCAGGCATTCGACCGCTCCGGCGCCGGCAGCAACGTCCGCTTCGACCAGTATCTTCGGACAGAGCTACTC GGCCGCCGCCGGCGGGTACCCGGGCGCGTTCGCCGCGCCGCACCAGCAGCCGCCCCACGGCGCCGGCTATCCTAA |
| Gene | >Hirsu2|10619 ATGACAGACCCGGAAGCTGAAGTCCAGGCCACCGCCAACCTCTCCCCCGTGTCGCCCGCGCCAGTCCATACAGCC GCCCCTCGCGTCGTGCCGGCGCTGCAGGATACTGTCGACACCATCGACGCCATGGTTTCTGCCGCCGCCGCTGCT GCTGCTGCCGCTGCCGCCGACACCGCCGCGCCCAACGGCGTTGCTGGCTTTGACACAGCCATGCTCGCCGATGCC GCCTCGGCCAACGACCTTGTAGATGATGACAGCCTTGACGACGCCTATGCCGACGACGACGACGCCGCCTCAGCC CCCGACACGGGCCTCCAGCCTCAGCCGGAGCTGCCTGACAGCAACGACGACTATGCCAAGACCTTCGACTCGCCC ATGGATCCAGAGGAAGGGGGCGAACAGGGCCATCATCCGCCGCAGCATGTATCATCGTCATCAATGCCAGTTGCG AACTTGACTACCAATAGCGCGTCGCACGCTGCTCCTGACAGTGTCGCTCATGAGATCTCTGCGGCTCCTACCACC ACCGCTGCCGCCGACGCCGCCGTCGCCGCCGCCGCCGCGCAAGGCACTGCTTCCCCGTCCGAAGCGCGGGCAGAC CCGTCGATGGAACCCTCGGACCCGCCGGCCGGACCCCAACAGCCCGATGCCGCTGCCAACTCCGAGTCCGCCTAC GCCGAGTCCCAGGACTCGTCGGTGGACATCCAGAAGCTCGTGGCCGACCTGACCGCCCAGCCCACCGAGGCCAGC TCCGATGCCGCGCCGTCGCCCCCGCCCGTTGCTGCTACAAAGGCCGAGCCGCCTCTCGGTTCCGCTCCTCTGTCC TCCTCCATATCCTTGCCCGCGGCCTCCTCGCTGCCGCCGCGGCCTCCACAGCCGCAGTCGGGTGCCCAAACGTAT ACCTCGCAGCAACACGCCGCAGGACCCAGTCCCACTGCCGCCGTTGTCCCCAGTGCCGGCACCGTACCGCCGACG ACCTCGGGTTTCGTCTCGGAGCCCGCCAGCAGTCTTCCGGCCCCCCCCGCCGCAGGTTTGAACGCGGCCTCCGCC GCCGCCCCTTTGAATGCCCCAGCCCACACATTCCAGACGGCCCCGGGCTACTCCAAGGACGGGGAGCCCGACGCC GACTACCAGCGCCAGTGGGAGCAGTTCATGTCTGATGAACGCCAGTACATGTCCGATGCGAAATGGGACCGCTTT CCCGAAGGATCCCGCATCTTCATCGGTATCTTCATCCTTTTTCTCTCCCTCCCGTTGCCATGCCTACGCCCGACC GCTGACCTTTCGTCTCCCGCGCAGGCAACCTTTCCAGTGACAAGGTTTCGAAGCGAGACGTCTTTGATGTCTTCT ACAAGTACGGAAGACTGGCGCAGATCTCTCTCAAGTCGGCATACGGCTTCGTGCAGTATCACGCCGTCGACGAGG GCCGCCAGGCCATGGAAAACCTACAAGGCATCGAGATCAAGGGCCGCCGCATCCGTACGTACAAGGCCGTGTCCC TGCCGAGCAGAAAAGCCCAGTCTCTCTAACCATTGCTCAGATCTTGAAGTTTCCCGAGTGCAGGACAAGGGGAAG AAGGATCGTGGCCGCAGCAACGATCGAGCGAGTCGCCGACGAGGCGAAAAACACCAGCACCACCAGGGCCGCGAT GACTACAGGCCCGGGCGCAACTCGCCGCGACGCAACGACTACCATGCAAGAGATGAAAACTTTGGCCGATCTCGG GGCTATGAGTCGGCTCGAGGGGCAGGACGCGGCCGTTCGCGCTCGCCCGAGTACGGCCGCAACGACAGAGACTCG TACAGACGACGCAGCCCCAGCCCGTACGGTCGAGGTCGACACGAGGCGGAACTCGACCTGCCCCGTAGGTACGGC GCCGATGTCCCCGACGTGCAGATCATCCTGCAGCCTGAGGTCAACCGCGACTTCGTGACCTGGGTCGAGGCCGCT TTCAAGGCCAAGGGGCTCAAGACCGAAGTCATGTACCTCCACCCCCGTTTCCCCAAGGACCAGATCATCCAGCGT CAGGCGGCGGAAGGCGTCTACGGCGTCGTAGACCTGGACCTGCGTGCCCAGGGCCTCGGCAGGATACCCGTGCAG GCATTCGACCGCTCCGGCGCCGGCAGCAACGTCCGCTTCGACCAGTATGTCGACCTGGACCCCAACACGGCCGCC GAGGTCATCGTGCGCGCCAAGGCGACGGCCGCCGCCAGCTTCGGACAGAGCTACTCGGCCGCCGCCGGCGGGTAC CCGGGCGCGTTCGCCGCGCCGCACCAGCAGCCGCCCCACGGCGCCGGCTATCCTAA |