Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|10612
Gene name
LocationContig_876:3321..3935
Strand-
Gene length (bp)614
Transcript length (bp)333
Coding sequence length (bp)333
Protein length (aa) 111

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.3E-19 10 76

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O59670|SF3B6_SCHPO Splicing factor 3B subunit 6-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.07c PE=3 SV=2 10 109 5.0E-37
sp|P59708|SF3B6_MOUSE Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1 7 110 3.0E-34
sp|Q9Y3B4|SF3B6_HUMAN Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1 7 110 3.0E-34
sp|Q9FMP4|SF3B6_ARATH Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1 7 109 1.0E-33
sp|Q8ITY4|SF3B6_CAEEL Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 PE=3 SV=2 7 109 2.0E-33
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O59670|SF3B6_SCHPO Splicing factor 3B subunit 6-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.07c PE=3 SV=2 10 109 5.0E-37
sp|P59708|SF3B6_MOUSE Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1 7 110 3.0E-34
sp|Q9Y3B4|SF3B6_HUMAN Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1 7 110 3.0E-34
sp|Q9FMP4|SF3B6_ARATH Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1 7 109 1.0E-33
sp|Q8ITY4|SF3B6_CAEEL Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 PE=3 SV=2 7 109 2.0E-33
sp|Q9VRV7|SF3B6_DROME Splicing factor 3B subunit 6-like protein OS=Drosophila melanogaster GN=CG13298 PE=1 SV=1 7 109 2.0E-33
sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1 7 98 2.0E-09
sp|Q54WM4|EIF3G_DICDI Eukaryotic translation initiation factor 3 subunit G OS=Dictyostelium discoideum GN=eif3G PE=3 SV=1 5 78 4.0E-09
sp|F4JHI7|SR34B_ARATH Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana GN=SR34B PE=2 SV=1 2 78 1.0E-08
sp|O22315|SR34_ARATH Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 SV=1 2 81 9.0E-08
sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2 3 83 1.0E-07
sp|Q8L3X8|SRC30_ARATH Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana GN=SCL30 PE=1 SV=1 10 86 2.0E-07
sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrd1 PE=3 SV=1 5 79 2.0E-07
sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1 10 84 3.0E-07
sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1 10 84 3.0E-07
sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2 10 84 3.0E-07
sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2 10 85 3.0E-07
sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1 5 110 4.0E-07
sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1 10 83 4.0E-07
sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum GN=mrd1 PE=3 SV=1 10 79 4.0E-07
sp|C8V330|EIF3G_EMENI Eukaryotic translation initiation factor 3 subunit G OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=tif35 PE=3 SV=1 10 80 5.0E-07
sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=1 SV=1 4 84 5.0E-07
sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mrd1 PE=3 SV=1 10 109 5.0E-07
sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1 5 85 7.0E-07
sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1 5 85 8.0E-07
sp|Q0CPF9|EIF3G_ASPTN Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif35 PE=3 SV=1 10 80 1.0E-06
sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3 5 79 1.0E-06
sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1 SV=2 8 95 1.0E-06
sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1 SV=1 8 95 1.0E-06
sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2 SV=1 8 95 1.0E-06
sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1 10 84 1.0E-06
sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2 SV=1 8 95 1.0E-06
sp|Q0U6E7|EIF3G_PHANO Eukaryotic translation initiation factor 3 subunit G OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=TIF35 PE=3 SV=2 6 82 2.0E-06
sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1 10 84 2.0E-06
sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=2 SV=3 10 84 2.0E-06
sp|A1DGS2|EIF3G_NEOFI Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=TIF35 PE=3 SV=1 10 80 2.0E-06
sp|Q4X1I3|EIF3G_ASPFU Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=tif35 PE=3 SV=1 10 80 2.0E-06
sp|B0XS28|EIF3G_ASPFC Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=tif35 PE=3 SV=1 10 80 2.0E-06
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2 10 102 3.0E-06
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1 10 102 3.0E-06
sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1 10 102 3.0E-06
sp|Q5BGA9|MRD1_EMENI Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=mrd1 PE=3 SV=1 10 91 4.0E-06
sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=TIF35 PE=3 SV=1 10 80 4.0E-06
sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRD1 PE=3 SV=2 12 84 5.0E-06
sp|A1C646|EIF3G_ASPCL Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=tif35 PE=3 SV=1 10 80 5.0E-06
sp|Q2U002|EIF3G_ASPOR Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=tif35 PE=3 SV=1 10 80 6.0E-06
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2 10 78 7.0E-06
sp|A2R7Z2|EIF3G_ASPNC Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif35 PE=3 SV=1 10 82 7.0E-06
sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1 5 82 7.0E-06
sp|Q01560|NOP3_YEAST Nucleolar protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NPL3 PE=1 SV=1 10 82 8.0E-06
sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1 SV=1 10 80 9.0E-06
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=1 SV=1 10 102 9.0E-06
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2 10 102 1.0E-05
[Show less]

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.6388 0.5863 0.0139 0.0203 0.0181 0.0016 0.0866 0.0071 0.0362 0.0013

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup1301
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7239
Ophiocordyceps australis map64 (Brazil) OphauB2|4332
Ophiocordyceps camponoti-floridani Ophcf2|00296
Ophiocordyceps camponoti-rufipedis Ophun1|6065
Ophiocordyceps kimflemingae Ophio5|8398
Ophiocordyceps subramaniannii Hirsu2|10612 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|10612
MLTTADDRALFVKNLSYNVTPEELFDLFGKFGPIRQVRQGISNTTKGTAFVVYEDVMDAKQACDKLNGFNFQNRY
LVVLYHQPEKMIKSKEDLEARRESLAQLKKQHGID*
Coding >Hirsu2|10612
ATGCTGACGACGGCCGACGACAGAGCTCTGTTCGTCAAGAACTTGAGCTACAACGTCACTCCAGAGGAGTTGTTT
GACCTCTTTGGAAAATTCGGCCCAATTCGCCAGGTCCGCCAAGGCATCTCGAACACGACCAAGGGAACGGCGTTT
GTCGTCTATGAGGACGTGATGGATGCCAAGCAAGCCTGCGACAAGCTCAACGGCTTCAACTTCCAGAACCGCTAT
CTTGTTGTTCTATATCACCAGCCCGAGAAGATGATCAAGTCCAAAGAGGACCTCGAGGCCCGCCGTGAATCTTTA
GCCCAGCTCAAGAAGCAGCACGGCATCGATTGA
Transcript >Hirsu2|10612
ATGCTGACGACGGCCGACGACAGAGCTCTGTTCGTCAAGAACTTGAGCTACAACGTCACTCCAGAGGAGTTGTTT
GACCTCTTTGGAAAATTCGGCCCAATTCGCCAGGTCCGCCAAGGCATCTCGAACACGACCAAGGGAACGGCGTTT
GTCGTCTATGAGGACGTGATGGATGCCAAGCAAGCCTGCGACAAGCTCAACGGCTTCAACTTCCAGAACCGCTAT
CTTGTTGTTCTATATCACCAGCCCGAGAAGATGATCAAGTCCAAAGAGGACCTCGAGGCCCGCCGTGAATCTTTA
GCCCAGCTCAAGAAGCAGCACGGCATCGATTGA
Gene >Hirsu2|10612
ATGCTGACGACGGCCGACGACAGAGCTCTGTTCGTCAAGAACTTGAGGTGAGTAGCCCGAGTCGACGCTGCCCCT
CCCGACGCTCCCCGGCCCGCTCCCCGGACGCTTGCGAGACTGCTTCTGACGGTGATTGACGTAGCTACAACGTCA
CTCCAGAGGAGTTGTTTGACCTCTTTGGAAAATTCGGCCCAATTCGGTAGGCTTCCTCGCCCGTCCCCCCCCCCC
GACCGCGACGCCCCCCCCCAGCTCCTAACCCCTGTGCGCAGCCAGGTCCGCCAAGGCATCTCGAACACGACCAAG
GGAACGGCGTTTGTCGTCTATGAGGACGTGATGGATGCCAAGCAAGCCTGCGACAAGCTCAACGGCTTCAACTTC
CAGAACCGCTATCTTGTTGGTGCGTCGTGTCCGCCTCCTTTTCTCGCGTCGCCCGGCTCGGGTCCGCCGGCTCGG
GTCCGCCGACCTGGGTCCGCCGAGCGCGAAAGCGGCGTGTCGCTAACGCGCGGCTGTCAACAGTTCTATATCACC
AGCCCGAGAAGATGATCAAGTCCAAAGAGGACCTCGAGGCCCGCCGTGAATCTTTAGCCCAGCTCAAGAAGCAGC
ACGGCATCGATTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail