© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10565 |
| Gene name | |
| Location | Contig_867:1393..2506 |
| Strand | + |
| Gene length (bp) | 1113 |
| Transcript length (bp) | 648 |
| Coding sequence length (bp) | 648 |
| Protein length (aa) | 216 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04178 | Got1 | Got1/Sft2-like family | 1.2E-32 | 81 | 192 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38166|SFT2_YEAST | Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFT2 PE=1 SV=1 | 4 | 209 | 2.0E-42 |
| sp|Q9P6K1|SFT2_SCHPO | Protein transport protein sft2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sft2 PE=3 SV=1 | 44 | 213 | 1.0E-32 |
| sp|Q9CSV6|SFT2C_MOUSE | Vesicle transport protein SFT2C OS=Mus musculus GN=Sft2d3 PE=1 SV=2 | 48 | 201 | 8.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016192 | vesicle-mediated transport | Yes |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 83 | 105 | 22 |
| 2 | 112 | 131 | 19 |
| 3 | 146 | 164 | 18 |
| 4 | 171 | 193 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10565 MASSSFRDSINSLGWSRRGADEPANTSQQSGLLSSIQSLNPFQDRGYMRLPTTESAGAPLPAPNRREEEEAWFVL SRWDRLLIFGACNLAALACFVICFTLFPVLSLRPRKFVILWSVGSLLFLASFAAVMGPVTYVYHLLSTPRLPFTA AYFGSIVLTLVFALKLHSTILTLFSALVQLACLVWYLVSYFPMGSTGLRLAASFGTRQAASWMTG* |
| Coding | >Hirsu2|10565 ATGGCTTCGAGCTCGTTTCGGGACTCCATCAACTCGCTCGGCTGGAGCCGACGGGGCGCGGATGAGCCCGCCAAC ACGTCCCAGCAGTCCGGCCTGCTTTCCTCCATCCAGAGCCTGAACCCCTTCCAGGACCGAGGGTATATGCGCCTC CCGACGACCGAGAGCGCCGGAGCACCCTTGCCGGCGCCAAATCGCCGAGAGGAGGAGGAGGCCTGGTTCGTATTG AGCAGATGGGACCGGCTGTTGATCTTTGGGGCTTGCAACCTCGCCGCCCTCGCCTGCTTCGTCATCTGCTTTACC CTCTTCCCGGTTCTCTCGCTGAGGCCGCGCAAGTTTGTCATCTTGTGGTCTGTCGGCTCGCTCCTCTTCCTGGCC TCGTTCGCGGCCGTCATGGGCCCTGTCACCTACGTCTACCACCTCCTGTCAACACCCAGGCTGCCCTTCACCGCA GCCTACTTCGGCTCCATCGTCCTGACACTAGTCTTTGCGCTCAAGCTTCACAGCACCATCCTGACCCTCTTCTCC GCCCTCGTCCAACTCGCCTGCCTGGTCTGGTATCTTGTCAGCTACTTCCCCATGGGCTCCACTGGCCTGCGCCTG GCCGCCTCGTTCGGCACTAGACAGGCCGCTTCGTGGATGACGGGGTAG |
| Transcript | >Hirsu2|10565 ATGGCTTCGAGCTCGTTTCGGGACTCCATCAACTCGCTCGGCTGGAGCCGACGGGGCGCGGATGAGCCCGCCAAC ACGTCCCAGCAGTCCGGCCTGCTTTCCTCCATCCAGAGCCTGAACCCCTTCCAGGACCGAGGGTATATGCGCCTC CCGACGACCGAGAGCGCCGGAGCACCCTTGCCGGCGCCAAATCGCCGAGAGGAGGAGGAGGCCTGGTTCGTATTG AGCAGATGGGACCGGCTGTTGATCTTTGGGGCTTGCAACCTCGCCGCCCTCGCCTGCTTCGTCATCTGCTTTACC CTCTTCCCGGTTCTCTCGCTGAGGCCGCGCAAGTTTGTCATCTTGTGGTCTGTCGGCTCGCTCCTCTTCCTGGCC TCGTTCGCGGCCGTCATGGGCCCTGTCACCTACGTCTACCACCTCCTGTCAACACCCAGGCTGCCCTTCACCGCA GCCTACTTCGGCTCCATCGTCCTGACACTAGTCTTTGCGCTCAAGCTTCACAGCACCATCCTGACCCTCTTCTCC GCCCTCGTCCAACTCGCCTGCCTGGTCTGGTATCTTGTCAGCTACTTCCCCATGGGCTCCACTGGCCTGCGCCTG GCCGCCTCGTTCGGCACTAGACAGGCCGCTTCGTGGATGACGGGGTAG |
| Gene | >Hirsu2|10565 ATGGCTTCGAGCTCGTTTCGGGACTCCATCAACTCGCTCGGCTGGAGCCGACGGGGCGCGGATGAGCCCGCCAAC ACGTCCCAGCAGTCCGGCCTGCTTTCCTCCATCCAGAGCCTGAACCCCTTCCAGGACCGAGGGTATATGCGCCTC CCGACGACCGAGAGCGCCGGAGCACCCTTGCCGGCGCCAAATCGCCGAGAGGAGGAGGAGGCCTGGTTCGTATGT GAGTCAACCTGACGACATCAAGTCGCGGCCCCCCTGCAGCAGGGCATGTGCATCGCATCTTGAGCCATACTGGAG ATTCTGCATGTGATTCGCATGATGCGCCTCGTGGGTGGCAGACCTAACTGGTGGTTGCAGTGAGCAGATGGGACC GGCTGTTGATCTTTGGGGCTTGCAACCTCGCCGCCCTCGCCTGCTTCGTCATCTGCTTTACCCTCTTCCCGGTTC TCTCGCTGAGGCCGCGCAAGTTTGTCATCTTGTACGTCGACCTGTCGACCATATCCCTCCTCGTCTCTCTCTTTC CTGCCTTCCCGTCCCTCCTCCTCTCCCGCCCGGCTCGCTCCTCCCATGTGGCAAAAGCCGTCGGCTCGCCCCCCA GCGACGTGCCGCCCGATGGTCGGGTCGCCTTGCCTGCGAAGTGCCGGCTTGCCCAGACATCCGCGCCGTTGATCA TGGACCTGCTGTGCCGTTGGCCGAGCTAAGAAACAGGACGCAGGTGGTCTGTCGGCTCGCTCCTCTTCCTGGCCT CGTTCGCGGCCGTCATGGGCCCTGTCACCTACGTCTACCACCTCCTGTCAACACCCAGGCTGCCCTTCACCGCAG CCTACTTCGGCTCCATCGTCCTGACACTAGTCTTTGCGCTCAAGGTGCGTCTCCCCCTCCCCGCCGAAGGAGCCG CAGGGGGGCAGGGAGAGAGATGACGTGTGTGCTGACGATGTGTGATGATGGGGGTTGCAGCTTCACAGCACCATC CTGACCCTCTTCTCCGCCCTCGTCCAACTCGCCTGCCTGGTCTGGTATCTTGTCAGCTACTTCCCCATGGGCTCC ACTGGCCTGCGCCTGGCCGCCTCGTTCGGCACTAGACAGGCCGCTTCGTGGATGACGGGGTAG |