Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1056
Gene name
LocationContig_122:117..1034
Strand-
Gene length (bp)917
Transcript length (bp)582
Coding sequence length (bp)582
Protein length (aa) 194

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 6.3E-07 82 111

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P53749|YN92_YEAST Uncharacterized transcriptional regulatory protein YNR063W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNR063W PE=1 SV=1 70 111 2.0E-06

GO

GO Term Description Terminal node
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Yes
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0008270 zinc ion binding Yes
GO:0009889 regulation of biosynthetic process No
GO:0050789 regulation of biological process No
GO:0008150 biological_process No
GO:0010468 regulation of gene expression No
GO:0005488 binding No
GO:2001141 regulation of RNA biosynthetic process No
GO:0050794 regulation of cellular process No
GO:0031323 regulation of cellular metabolic process No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0051252 regulation of RNA metabolic process No
GO:0140110 transcription regulator activity No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:0019222 regulation of metabolic process No
GO:0003700 DNA-binding transcription factor activity No
GO:0031326 regulation of cellular biosynthetic process No
GO:0043169 cation binding No
GO:0065007 biological regulation No
GO:0043167 ion binding No
GO:0046872 metal ion binding No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0060255 regulation of macromolecule metabolic process No
GO:0003674 molecular_function No
GO:0046914 transition metal ion binding No
GO:0080090 regulation of primary metabolic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus 0.3999 0.7308 0.491 0.0282 0.0989 0.0086 0.0997 0.0848 0.0658 0.0584

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Fungal Specific TF

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup7471
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|1056 (this protein)
Ophiocordyceps subramaniannii Hirsu2|3542

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1056
MEQIETQASDLRYLVAQAPVALSDTASVSYDTPQQASPPPSGSGAVGENSAANANKRRSVDDGPGSGQKQTRSKR
NRYISIACNECKRRKIKCNGETPCQRCGNLNLACLYAPNCCTSSFKDSDDFKNVVAQVSRLQDEVSRLNQTVKVL
QADSSSRLAPAAAPKYRLARPGVSARAPASPPGVLPWPSCLLP*
Coding >Hirsu2|1056
ATGGAGCAGATCGAGACGCAGGCCTCTGATTTGCGCTATCTGGTGGCTCAGGCGCCCGTTGCGCTGAGCGACACG
GCCAGCGTGTCGTACGATACGCCGCAGCAGGCCAGCCCGCCGCCCTCGGGTTCCGGTGCCGTCGGAGAAAATTCC
GCGGCCAATGCCAACAAGCGACGGTCGGTCGACGACGGGCCCGGCAGCGGCCAGAAGCAGACGAGGAGCAAGAGA
AACCGGTATATCTCCATCGCATGCAACGAGTGCAAGCGACGAAAGATCAAGTGCAATGGCGAGACGCCGTGCCAG
CGCTGCGGGAACCTGAACCTGGCCTGCCTGTACGCACCCAACTGCTGCACCAGCAGCTTCAAGGACTCGGATGAC
TTCAAGAATGTCGTCGCCCAGGTGAGCCGGCTGCAGGACGAGGTCAGCCGGCTCAACCAGACGGTCAAGGTGCTG
CAGGCCGACTCGTCGTCGCGCCTGGCCCCGGCCGCCGCGCCGAAGTACCGCCTGGCCCGGCCGGGCGTCAGTGCC
CGAGCTCCCGCTAGCCCTCCAGGTGTCCTGCCCTGGCCTAGCTGCTTGCTGCCTTAG
Transcript >Hirsu2|1056
ATGGAGCAGATCGAGACGCAGGCCTCTGATTTGCGCTATCTGGTGGCTCAGGCGCCCGTTGCGCTGAGCGACACG
GCCAGCGTGTCGTACGATACGCCGCAGCAGGCCAGCCCGCCGCCCTCGGGTTCCGGTGCCGTCGGAGAAAATTCC
GCGGCCAATGCCAACAAGCGACGGTCGGTCGACGACGGGCCCGGCAGCGGCCAGAAGCAGACGAGGAGCAAGAGA
AACCGGTATATCTCCATCGCATGCAACGAGTGCAAGCGACGAAAGATCAAGTGCAATGGCGAGACGCCGTGCCAG
CGCTGCGGGAACCTGAACCTGGCCTGCCTGTACGCACCCAACTGCTGCACCAGCAGCTTCAAGGACTCGGATGAC
TTCAAGAATGTCGTCGCCCAGGTGAGCCGGCTGCAGGACGAGGTCAGCCGGCTCAACCAGACGGTCAAGGTGCTG
CAGGCCGACTCGTCGTCGCGCCTGGCCCCGGCCGCCGCGCCGAAGTACCGCCTGGCCCGGCCGGGCGTCAGTGCC
CGAGCTCCCGCTAGCCCTCCAGGTGTCCTGCCCTGGCCTAGCTGCTTGCTGCCTTAG
Gene >Hirsu2|1056
ATGGAGCAGATCGAGACGCAGGCCTCTGATTTGCGCTATCTGGTGGCTCAGGCGCCCGTTGCGCTGAGCGACACG
GCCAGCGTGTCGTACGATACGCCGCAGCAGGCCAGCCCGCCGCCCTCGGGTTCCGGTGCCGTCGGAGAAAATTCC
GCGGCCAATGCCAACAAGCGACGGTCGGTCGACGACGGGCCCGGCAGCGGCCAGAAGCAGACGAGGAGCAAGAGA
AACCGGGTAAGAGTTCCAGCGTCGAGACACGGACGGGTCGGCCGGGCCGCCGCCCTCCCGCCCTCCCGCCCTCGC
CCATCCCCGGCCAGGTCGGCCGGCCTCGACCTTCTGCGTCGGCCGGCGCGCCGTCGGCTTCGCCAGCCTTGCTGA
CGTGCTGTCTCTCTCCTACCCCCTTTTTTTTTTCCCTCCCCCTCTTCCCGGCACACAGTATATCTCCATCGCATG
GTGAGTGGTTCACGTGCTTTTGCCGACCCCAAGCCGCCCTCCCGTCCCCCAACTCCGGCTTCGGGGCCGCCGCCG
CCCGTCAGCGCGCCTCGGCAGCGCCCTCGTCTCCCCCGCGCTGACTGACGGCCGGCAGCAACGAGTGCAAGCGAC
GAAAGATCAAGTGCAATGGCGAGACGCCGTGCCAGCGCTGCGGGAACCTGAACCTGGCCTGCCTGTACGCACCCA
ACTGCTGCACCAGCAGCTTCAAGGACTCGGATGACTTCAAGAATGTCGTCGCCCAGGTGAGCCGGCTGCAGGACG
AGGTCAGCCGGCTCAACCAGACGGTCAAGGTGCTGCAGGCCGACTCGTCGTCGCGCCTGGCCCCGGCCGCCGCGC
CGAAGTACCGCCTGGCCCGGCCGGGCGTCAGTGCCCGAGCTCCCGCTAGCCCTCCAGGTGTCCTGCCCTGGCCTA
GCTGCTTGCTGCCTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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