© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10551 |
| Gene name | |
| Location | Contig_863:2059..3055 |
| Strand | - |
| Gene length (bp) | 996 |
| Transcript length (bp) | 996 |
| Coding sequence length (bp) | 996 |
| Protein length (aa) | 332 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07574 | SMC_Nse1 | Nse1 non-SMC component of SMC5-6 complex | 1.1E-69 | 13 | 204 |
| PF08746 | zf-RING-like | RING-like domain | 2.1E-14 | 228 | 270 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8WV22|NSE1_HUMAN | Non-structural maintenance of chromosomes element 1 homolog OS=Homo sapiens GN=NSMCE1 PE=1 SV=5 | 11 | 274 | 4.0E-14 |
| sp|Q499U6|NSE1_RAT | Non-structural maintenance of chromosomes element 1 homolog OS=Rattus norvegicus GN=Nsmce1 PE=2 SV=2 | 6 | 274 | 8.0E-14 |
| sp|Q3T0X7|NSE1_BOVIN | Non-structural maintenance of chromosomes element 1 homolog OS=Bos taurus GN=NSMCE1 PE=2 SV=2 | 11 | 274 | 1.0E-13 |
| sp|Q6P881|NSE1_XENTR | Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus tropicalis GN=nsmce1 PE=2 SV=1 | 5 | 307 | 1.0E-13 |
| sp|Q9D720|NSE1_MOUSE | Non-structural maintenance of chromosomes element 1 homolog OS=Mus musculus GN=Nsmce1 PE=1 SV=1 | 6 | 274 | 2.0E-13 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8WV22|NSE1_HUMAN | Non-structural maintenance of chromosomes element 1 homolog OS=Homo sapiens GN=NSMCE1 PE=1 SV=5 | 11 | 274 | 4.0E-14 |
| sp|Q499U6|NSE1_RAT | Non-structural maintenance of chromosomes element 1 homolog OS=Rattus norvegicus GN=Nsmce1 PE=2 SV=2 | 6 | 274 | 8.0E-14 |
| sp|Q3T0X7|NSE1_BOVIN | Non-structural maintenance of chromosomes element 1 homolog OS=Bos taurus GN=NSMCE1 PE=2 SV=2 | 11 | 274 | 1.0E-13 |
| sp|Q6P881|NSE1_XENTR | Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus tropicalis GN=nsmce1 PE=2 SV=1 | 5 | 307 | 1.0E-13 |
| sp|Q9D720|NSE1_MOUSE | Non-structural maintenance of chromosomes element 1 homolog OS=Mus musculus GN=Nsmce1 PE=1 SV=1 | 6 | 274 | 2.0E-13 |
| sp|Q5RAZ5|NSE1_PONAB | Non-structural maintenance of chromosomes element 1 homolog OS=Pongo abelii GN=NSMCE1 PE=2 SV=1 | 11 | 274 | 2.0E-13 |
| sp|Q6DGT7|NSE1_DANRE | Non-structural maintenance of chromosomes element 1 homolog OS=Danio rerio GN=nsmce1 PE=2 SV=1 | 172 | 274 | 6.0E-11 |
| sp|Q53EK2|NSE1_SCHPO | Non-structural maintenance of chromosomes element 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nse1 PE=1 SV=1 | 1 | 278 | 8.0E-11 |
| sp|Q07913|NSE1_YEAST | Non-structural maintenance of chromosomes element 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSE1 PE=1 SV=1 | 43 | 246 | 2.0E-08 |
| sp|Q9VMA0|NSE1_DROME | Non-structural maintenance of chromosomes element 1 homolog OS=Drosophila melanogaster GN=Nse1 PE=1 SV=1 | 14 | 276 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006281 | DNA repair | Yes |
| GO:0030915 | Smc5-Smc6 complex | Yes |
| GO:0044238 | primary metabolic process | No |
| GO:1902494 | catalytic complex | No |
| GO:0006950 | response to stress | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0106068 | SUMO ligase complex | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0050896 | response to stimulus | No |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0044422 | organelle part | No |
| GO:0005575 | cellular_component | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044446 | intracellular organelle part | No |
| GO:0033554 | cellular response to stress | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0044464 | cell part | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044427 | chromosomal part | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0044424 | intracellular part | No |
| GO:1990234 | transferase complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 45 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10551 MEELLAQGYNDSHRAFLQALLARGSVTFEESQAILAAIFDAANGGDGNVRPDQISQADFQAYIEVVSDAASLFDF EIRSTVHQLSKQRIYALVNTTSDPQTQLATTYNPEEVAFIKRALDGMFDKYNTPRMEVLALTEMQAIKFARPNRR NSQVDGAEQSQGSSDRGLKHSEVERVLASLVEGGWFEKSRHGFYSVTPRALLELRPWLIDVYNDPDAGPDDWQRI KFCEACKDIITTGLRCPEPSCTLRLHDICQEAFWRARRTQDCPKCSREWTTSSSYVGERAITMTEAYRRGRKRSG GRRSTLADDVIQQEEEDMEERSNGEQNEDDE* |
| Coding | >Hirsu2|10551 ATGGAGGAACTTCTGGCGCAGGGATATAACGATAGTCATCGTGCATTTCTCCAGGCACTCCTGGCACGGGGCTCG GTGACGTTCGAAGAGTCGCAAGCCATCCTCGCGGCGATATTCGACGCCGCAAATGGCGGCGACGGCAATGTGCGG CCCGACCAGATCAGCCAGGCCGATTTCCAGGCTTACATCGAGGTGGTCTCGGATGCGGCATCCCTGTTCGACTTC GAGATTCGCAGCACGGTTCACCAACTCTCCAAGCAACGCATCTACGCTCTTGTCAACACGACCTCGGATCCCCAG ACGCAGTTAGCTACAACCTACAATCCCGAGGAGGTCGCCTTCATCAAGCGTGCGCTGGATGGCATGTTCGACAAG TACAATACGCCCCGCATGGAGGTGCTTGCCCTCACCGAGATGCAAGCCATCAAGTTCGCGAGGCCAAACCGAAGA AACAGTCAGGTCGATGGGGCGGAGCAATCGCAGGGCTCAAGCGACAGGGGCCTTAAGCACAGCGAGGTGGAGCGG GTGCTCGCGAGCCTCGTCGAGGGAGGCTGGTTTGAGAAGAGCCGGCACGGATTCTACTCGGTTACGCCGCGTGCC CTTCTGGAGCTGCGGCCGTGGCTCATCGACGTGTACAACGACCCGGATGCCGGCCCGGACGACTGGCAGCGGATC AAGTTCTGCGAGGCCTGCAAGGACATCATCACAACCGGGCTCCGATGTCCCGAGCCCAGCTGCACCCTGCGGTTG CACGACATCTGCCAAGAGGCCTTCTGGCGGGCTAGAAGAACGCAAGACTGTCCCAAGTGCTCCCGAGAATGGACG ACGAGCTCCAGCTACGTCGGCGAAAGAGCCATCACCATGACAGAGGCGTACCGGCGAGGGCGCAAACGCAGTGGC GGGAGGAGGAGTACTCTGGCAGACGATGTCATACAGCAGGAAGAGGAAGACATGGAGGAAAGGAGTAACGGGGAA CAGAACGAGGATGACGAGTGA |
| Transcript | >Hirsu2|10551 ATGGAGGAACTTCTGGCGCAGGGATATAACGATAGTCATCGTGCATTTCTCCAGGCACTCCTGGCACGGGGCTCG GTGACGTTCGAAGAGTCGCAAGCCATCCTCGCGGCGATATTCGACGCCGCAAATGGCGGCGACGGCAATGTGCGG CCCGACCAGATCAGCCAGGCCGATTTCCAGGCTTACATCGAGGTGGTCTCGGATGCGGCATCCCTGTTCGACTTC GAGATTCGCAGCACGGTTCACCAACTCTCCAAGCAACGCATCTACGCTCTTGTCAACACGACCTCGGATCCCCAG ACGCAGTTAGCTACAACCTACAATCCCGAGGAGGTCGCCTTCATCAAGCGTGCGCTGGATGGCATGTTCGACAAG TACAATACGCCCCGCATGGAGGTGCTTGCCCTCACCGAGATGCAAGCCATCAAGTTCGCGAGGCCAAACCGAAGA AACAGTCAGGTCGATGGGGCGGAGCAATCGCAGGGCTCAAGCGACAGGGGCCTTAAGCACAGCGAGGTGGAGCGG GTGCTCGCGAGCCTCGTCGAGGGAGGCTGGTTTGAGAAGAGCCGGCACGGATTCTACTCGGTTACGCCGCGTGCC CTTCTGGAGCTGCGGCCGTGGCTCATCGACGTGTACAACGACCCGGATGCCGGCCCGGACGACTGGCAGCGGATC AAGTTCTGCGAGGCCTGCAAGGACATCATCACAACCGGGCTCCGATGTCCCGAGCCCAGCTGCACCCTGCGGTTG CACGACATCTGCCAAGAGGCCTTCTGGCGGGCTAGAAGAACGCAAGACTGTCCCAAGTGCTCCCGAGAATGGACG ACGAGCTCCAGCTACGTCGGCGAAAGAGCCATCACCATGACAGAGGCGTACCGGCGAGGGCGCAAACGCAGTGGC GGGAGGAGGAGTACTCTGGCAGACGATGTCATACAGCAGGAAGAGGAAGACATGGAGGAAAGGAGTAACGGGGAA CAGAACGAGGATGACGAGTGA |
| Gene | >Hirsu2|10551 ATGGAGGAACTTCTGGCGCAGGGATATAACGATAGTCATCGTGCATTTCTCCAGGCACTCCTGGCACGGGGCTCG GTGACGTTCGAAGAGTCGCAAGCCATCCTCGCGGCGATATTCGACGCCGCAAATGGCGGCGACGGCAATGTGCGG CCCGACCAGATCAGCCAGGCCGATTTCCAGGCTTACATCGAGGTGGTCTCGGATGCGGCATCCCTGTTCGACTTC GAGATTCGCAGCACGGTTCACCAACTCTCCAAGCAACGCATCTACGCTCTTGTCAACACGACCTCGGATCCCCAG ACGCAGTTAGCTACAACCTACAATCCCGAGGAGGTCGCCTTCATCAAGCGTGCGCTGGATGGCATGTTCGACAAG TACAATACGCCCCGCATGGAGGTGCTTGCCCTCACCGAGATGCAAGCCATCAAGTTCGCGAGGCCAAACCGAAGA AACAGTCAGGTCGATGGGGCGGAGCAATCGCAGGGCTCAAGCGACAGGGGCCTTAAGCACAGCGAGGTGGAGCGG GTGCTCGCGAGCCTCGTCGAGGGAGGCTGGTTTGAGAAGAGCCGGCACGGATTCTACTCGGTTACGCCGCGTGCC CTTCTGGAGCTGCGGCCGTGGCTCATCGACGTGTACAACGACCCGGATGCCGGCCCGGACGACTGGCAGCGGATC AAGTTCTGCGAGGCCTGCAAGGACATCATCACAACCGGGCTCCGATGTCCCGAGCCCAGCTGCACCCTGCGGTTG CACGACATCTGCCAAGAGGCCTTCTGGCGGGCTAGAAGAACGCAAGACTGTCCCAAGTGCTCCCGAGAATGGACG ACGAGCTCCAGCTACGTCGGCGAAAGAGCCATCACCATGACAGAGGCGTACCGGCGAGGGCGCAAACGCAGTGGC GGGAGGAGGAGTACTCTGGCAGACGATGTCATACAGCAGGAAGAGGAAGACATGGAGGAAAGGAGTAACGGGGAA CAGAACGAGGATGACGAGTGA |