© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10533 |
| Gene name | |
| Location | Contig_86:36960..39363 |
| Strand | + |
| Gene length (bp) | 2403 |
| Transcript length (bp) | 2265 |
| Coding sequence length (bp) | 2265 |
| Protein length (aa) | 755 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05285 | SDA1 | SDA1 | 2.8E-95 | 421 | 747 |
| PF08158 | NUC130_3NT | NUC130/3NT domain | 1.5E-22 | 70 | 120 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10342|SDA1_SCHPO | Protein sda1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sda1 PE=3 SV=2 | 1 | 746 | 4.0E-176 |
| sp|P53313|SDA1_YEAST | Protein SDA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDA1 PE=1 SV=1 | 1 | 748 | 1.0E-159 |
| sp|Q9NVU7|SDA1_HUMAN | Protein SDA1 homolog OS=Homo sapiens GN=SDAD1 PE=1 SV=3 | 11 | 738 | 1.0E-113 |
| sp|A5D7C2|SDA1_BOVIN | Protein SDA1 homolog OS=Bos taurus GN=SDAD1 PE=2 SV=1 | 11 | 738 | 6.0E-107 |
| sp|Q5XIQ5|SDA1_RAT | Protein SDA1 homolog OS=Rattus norvegicus GN=Sdad1 PE=1 SV=1 | 11 | 738 | 2.0E-106 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10342|SDA1_SCHPO | Protein sda1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sda1 PE=3 SV=2 | 1 | 746 | 4.0E-176 |
| sp|P53313|SDA1_YEAST | Protein SDA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDA1 PE=1 SV=1 | 1 | 748 | 1.0E-159 |
| sp|Q9NVU7|SDA1_HUMAN | Protein SDA1 homolog OS=Homo sapiens GN=SDAD1 PE=1 SV=3 | 11 | 738 | 1.0E-113 |
| sp|A5D7C2|SDA1_BOVIN | Protein SDA1 homolog OS=Bos taurus GN=SDAD1 PE=2 SV=1 | 11 | 738 | 6.0E-107 |
| sp|Q5XIQ5|SDA1_RAT | Protein SDA1 homolog OS=Rattus norvegicus GN=Sdad1 PE=1 SV=1 | 11 | 738 | 2.0E-106 |
| sp|Q80UZ2|SDA1_MOUSE | Protein SDA1 homolog OS=Mus musculus GN=Sdad1 PE=1 SV=1 | 11 | 738 | 1.0E-103 |
| sp|Q6NV26|SDA1_DANRE | Protein SDA1 homolog OS=Danio rerio GN=sdad1 PE=2 SV=1 | 11 | 738 | 2.0E-103 |
| sp|A7S6A5|SDA1_NEMVE | Protein SDA1 homolog OS=Nematostella vectensis GN=sdad1 PE=3 SV=1 | 11 | 746 | 4.0E-103 |
| sp|Q2VPG3|SDA1_XENLA | Protein SDA1 homolog OS=Xenopus laevis GN=sdad1 PE=2 SV=1 | 11 | 738 | 5.0E-96 |
| sp|A4IIB1|SDA1_XENTR | Protein SDA1 homolog OS=Xenopus tropicalis GN=sdad1 PE=2 SV=1 | 11 | 738 | 5.0E-95 |
| sp|Q55DE2|SDA1_DICDI | Protein SDA1 homolog OS=Dictyostelium discoideum GN=sdad1 PE=3 SV=1 | 15 | 496 | 3.0E-94 |
| sp|Q7KKH3|SDA1_DROME | Protein SDA1 homolog OS=Drosophila melanogaster GN=Mys45A PE=1 SV=1 | 15 | 558 | 4.0E-93 |
| sp|Q9NEU2|SDA1_CAEEL | Protein SDA1 homolog OS=Caenorhabditis elegans GN=pro-3 PE=1 SV=4 | 19 | 466 | 3.0E-70 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10533 MGKRKVAALEKIDADFASLQYKIRRDPKSYKDDFLKQWEQYESQREIFLASPTTATTGSVESFHNMIDLIAHVAD CYPDETRTFPDDLKAMLTQHHAAMHPELREKVVGSLVLLRRKDVIDSAGVLTTLFPILVSSPSKTLRELLFNKIL SDLRNSNSKAINHPLNRTIQTVLYNLVTADRASPRAIWAIKLTRELWKRQIWTDAKPVDVMKEACLADNEKVVVG AVRFFLGGDKEREELEDESSDDDIDLSKVRHQIGINKKSKKQKEAYKKAVGKVKRNERKKSKPHPLNFSALHLLH DPQDFAEQLFSKHLHNTKAKLSLDSKILVLQLVTRLIGLHRLTVVPVYSWFIKYLTPRQQSVTSFLASLAQGTHD LVPPDVLEPLLQKIANEFVSEASASEVAAAGLNAIREVCARQPLAMTETLLQDLVQYRKSKDKGVMMAAKGLLSL YREVGAELLKKRDRGKEATIGLKAGLQQQRKFGDEQAGGIEGLDLLAKWKEEEKKRKRAERGLPETAGSDEDEKE DEEDGFNSSDWEVDSDNSSSSGEWINVSDSEDERPAPKKQKKMKNQRKGDGPDGDDDDSSDDEGGENDDGDREAE LERMSKLATTTILTPADLAKLQELRAAASIENAMGHRRKKAQGGDARHVDDGVTAENIEAPARLRKLTKEEKVAL AKEGKPDREEHKSTQAIRKSKKEAAGKSTSNREKQRKKNFLMTLGKAKSKQKRSLVETRKVLRGHVERSSRGGRR RNGG* |
| Coding | >Hirsu2|10533 ATGGGGAAGCGAAAAGTTGCGGCACTCGAGAAGATCGATGCAGACTTCGCGAGCCTGCAATACAAGATCCGGCGC GACCCCAAATCGTACAAGGACGACTTTCTGAAGCAGTGGGAGCAGTATGAGTCCCAGCGCGAAATCTTCCTGGCG TCCCCGACCACGGCCACGACCGGCTCGGTGGAATCCTTCCACAACATGATCGACCTGATCGCGCACGTCGCCGAC TGCTACCCCGACGAGACGCGGACCTTCCCCGACGACCTCAAAGCCATGCTGACACAGCATCACGCTGCCATGCAC CCAGAGCTGCGCGAAAAGGTCGTTGGCAGCCTCGTGCTGCTGCGGCGCAAGGACGTCATCGACTCGGCCGGCGTC CTCACCACCCTCTTCCCCATCCTGGTCTCTTCGCCGAGCAAGACTCTGCGCGAGCTGCTCTTCAACAAGATCCTG AGCGATCTGCGCAACTCCAACTCCAAGGCCATCAACCACCCGCTCAACCGCACGATCCAGACCGTCCTGTACAAT CTCGTCACCGCCGACCGAGCCTCGCCCCGCGCCATCTGGGCCATCAAGCTGACTCGCGAACTGTGGAAGCGACAA ATATGGACGGATGCGAAGCCCGTTGACGTCATGAAGGAGGCCTGCCTGGCCGACAACGAAAAGGTCGTCGTCGGC GCCGTGCGCTTCTTCCTCGGCGGCGACAAGGAGCGCGAGGAGCTCGAGGACGAGAGCAGCGACGACGACATTGAC CTGTCCAAGGTCAGGCACCAGATCGGCATCAACAAGAAGTCGAAGAAGCAGAAGGAGGCGTACAAGAAAGCCGTC GGCAAGGTCAAGAGGAACGAACGCAAGAAGAGCAAGCCCCATCCGCTCAACTTTTCCGCCCTCCACCTGCTTCAC GATCCGCAAGACTTCGCCGAGCAGCTCTTCTCCAAACACCTTCACAACACCAAGGCCAAGCTGTCGCTCGACAGC AAGATCCTGGTGCTACAGCTCGTCACGCGCCTGATCGGCCTCCACAGGCTGACCGTCGTGCCCGTATACTCCTGG TTCATCAAGTACCTAACGCCACGGCAGCAATCCGTCACATCCTTCCTGGCCTCGCTTGCGCAGGGCACCCACGAC CTCGTACCCCCCGATGTGCTTGAGCCGCTGCTCCAAAAGATTGCAAACGAGTTCGTCTCGGAAGCCTCGGCGTCC GAGGTCGCCGCCGCCGGCCTCAACGCCATCCGAGAAGTCTGCGCCCGGCAGCCGCTGGCCATGACGGAAACCCTC CTGCAGGACCTGGTGCAGTATCGCAAGAGCAAGGACAAGGGCGTCATGATGGCCGCCAAGGGGCTGCTGTCGCTG TACAGAGAGGTGGGGGCCGAGCTGCTGAAGAAGAGGGACCGCGGAAAGGAGGCGACGATTGGCCTCAAGGCGGGC CTGCAGCAACAGCGAAAGTTTGGCGATGAACAGGCCGGTGGCATCGAGGGCCTCGATTTGCTGGCGAAGTGGAAG GAGGAGGAAAAGAAGAGGAAGCGGGCTGAGAGGGGGCTTCCGGAGACGGCCGGAAGTGATGAGGACGAGAAGGAG GATGAGGAAGACGGTTTCAACTCGAGCGATTGGGAAGTCGATTCAGACAACAGCAGCAGCTCCGGGGAATGGATC AATGTCAGCGATTCCGAGGACGAGCGACCGGCGCCCAAGAAGCAGAAGAAGATGAAGAACCAGAGGAAAGGCGAC GGCCCTGACGGGGACGACGACGACAGCAGCGACGACGAAGGCGGCGAAAATGACGACGGGGACCGCGAAGCCGAG CTCGAACGCATGTCCAAGCTAGCCACCACGACGATCCTCACGCCGGCGGACTTGGCGAAGCTGCAGGAACTCCGC GCGGCAGCGTCCATCGAAAACGCCATGGGTCACCGCCGCAAGAAGGCGCAAGGCGGCGACGCGCGCCACGTCGAC GACGGCGTGACGGCGGAGAATATCGAGGCGCCGGCCCGGCTGCGCAAGCTGACCAAGGAGGAGAAGGTGGCGCTG GCCAAGGAGGGCAAGCCGGACCGGGAGGAGCACAAGAGCACGCAGGCGATCCGCAAGTCGAAGAAGGAGGCGGCA GGCAAGAGCACGAGCAACCGCGAGAAGCAGCGCAAGAAGAACTTTCTGATGACGCTGGGCAAGGCCAAGAGCAAG CAGAAGAGGAGCTTGGTGGAGACGAGAAAGGTGCTGAGGGGCCACGTCGAGAGGAGCTCGCGCGGAGGCCGCAGG AGGAACGGCGGGTGA |
| Transcript | >Hirsu2|10533 ATGGGGAAGCGAAAAGTTGCGGCACTCGAGAAGATCGATGCAGACTTCGCGAGCCTGCAATACAAGATCCGGCGC GACCCCAAATCGTACAAGGACGACTTTCTGAAGCAGTGGGAGCAGTATGAGTCCCAGCGCGAAATCTTCCTGGCG TCCCCGACCACGGCCACGACCGGCTCGGTGGAATCCTTCCACAACATGATCGACCTGATCGCGCACGTCGCCGAC TGCTACCCCGACGAGACGCGGACCTTCCCCGACGACCTCAAAGCCATGCTGACACAGCATCACGCTGCCATGCAC CCAGAGCTGCGCGAAAAGGTCGTTGGCAGCCTCGTGCTGCTGCGGCGCAAGGACGTCATCGACTCGGCCGGCGTC CTCACCACCCTCTTCCCCATCCTGGTCTCTTCGCCGAGCAAGACTCTGCGCGAGCTGCTCTTCAACAAGATCCTG AGCGATCTGCGCAACTCCAACTCCAAGGCCATCAACCACCCGCTCAACCGCACGATCCAGACCGTCCTGTACAAT CTCGTCACCGCCGACCGAGCCTCGCCCCGCGCCATCTGGGCCATCAAGCTGACTCGCGAACTGTGGAAGCGACAA ATATGGACGGATGCGAAGCCCGTTGACGTCATGAAGGAGGCCTGCCTGGCCGACAACGAAAAGGTCGTCGTCGGC GCCGTGCGCTTCTTCCTCGGCGGCGACAAGGAGCGCGAGGAGCTCGAGGACGAGAGCAGCGACGACGACATTGAC CTGTCCAAGGTCAGGCACCAGATCGGCATCAACAAGAAGTCGAAGAAGCAGAAGGAGGCGTACAAGAAAGCCGTC GGCAAGGTCAAGAGGAACGAACGCAAGAAGAGCAAGCCCCATCCGCTCAACTTTTCCGCCCTCCACCTGCTTCAC GATCCGCAAGACTTCGCCGAGCAGCTCTTCTCCAAACACCTTCACAACACCAAGGCCAAGCTGTCGCTCGACAGC AAGATCCTGGTGCTACAGCTCGTCACGCGCCTGATCGGCCTCCACAGGCTGACCGTCGTGCCCGTATACTCCTGG TTCATCAAGTACCTAACGCCACGGCAGCAATCCGTCACATCCTTCCTGGCCTCGCTTGCGCAGGGCACCCACGAC CTCGTACCCCCCGATGTGCTTGAGCCGCTGCTCCAAAAGATTGCAAACGAGTTCGTCTCGGAAGCCTCGGCGTCC GAGGTCGCCGCCGCCGGCCTCAACGCCATCCGAGAAGTCTGCGCCCGGCAGCCGCTGGCCATGACGGAAACCCTC CTGCAGGACCTGGTGCAGTATCGCAAGAGCAAGGACAAGGGCGTCATGATGGCCGCCAAGGGGCTGCTGTCGCTG TACAGAGAGGTGGGGGCCGAGCTGCTGAAGAAGAGGGACCGCGGAAAGGAGGCGACGATTGGCCTCAAGGCGGGC CTGCAGCAACAGCGAAAGTTTGGCGATGAACAGGCCGGTGGCATCGAGGGCCTCGATTTGCTGGCGAAGTGGAAG GAGGAGGAAAAGAAGAGGAAGCGGGCTGAGAGGGGGCTTCCGGAGACGGCCGGAAGTGATGAGGACGAGAAGGAG GATGAGGAAGACGGTTTCAACTCGAGCGATTGGGAAGTCGATTCAGACAACAGCAGCAGCTCCGGGGAATGGATC AATGTCAGCGATTCCGAGGACGAGCGACCGGCGCCCAAGAAGCAGAAGAAGATGAAGAACCAGAGGAAAGGCGAC GGCCCTGACGGGGACGACGACGACAGCAGCGACGACGAAGGCGGCGAAAATGACGACGGGGACCGCGAAGCCGAG CTCGAACGCATGTCCAAGCTAGCCACCACGACGATCCTCACGCCGGCGGACTTGGCGAAGCTGCAGGAACTCCGC GCGGCAGCGTCCATCGAAAACGCCATGGGTCACCGCCGCAAGAAGGCGCAAGGCGGCGACGCGCGCCACGTCGAC GACGGCGTGACGGCGGAGAATATCGAGGCGCCGGCCCGGCTGCGCAAGCTGACCAAGGAGGAGAAGGTGGCGCTG GCCAAGGAGGGCAAGCCGGACCGGGAGGAGCACAAGAGCACGCAGGCGATCCGCAAGTCGAAGAAGGAGGCGGCA GGCAAGAGCACGAGCAACCGCGAGAAGCAGCGCAAGAAGAACTTTCTGATGACGCTGGGCAAGGCCAAGAGCAAG CAGAAGAGGAGCTTGGTGGAGACGAGAAAGGTGCTGAGGGGCCACGTCGAGAGGAGCTCGCGCGGAGGCCGCAGG AGGAACGGCGGGTGA |
| Gene | >Hirsu2|10533 ATGGGGAAGCGAAAAGTTGCGGCACTCGAGAAGATCGATGCAGACTTGTGCGTTCTCGTCTCATGCGTCCTCCCC CATCTCTCTGCCAGCAACAGGAAACTGACCTGCCCCAGCGCGAGCCTGCAATACAAGATCCGGCGCGACCCCAAG TGAGAGACGACTCAGACGAGGCAACCTGCCGCGACGGCGCGTATAGACGGCCGCTGACACCCTCGGTCTAGATCG TACAAGGACGACTTTCTGAAGCAGTGGGAGCAGTATGAGTCCCAGCGCGAAATCTTCCTGGCGTCCCCGACCACG GCCACGACCGGCTCGGTGGAATCCTTCCACAACATGATCGACCTGATCGCGCACGTCGCCGACTGCTACCCCGAC GAGACGCGGACCTTCCCCGACGACCTCAAAGCCATGCTGACACAGCATCACGCTGCCATGCACCCAGAGCTGCGC GAAAAGGTCGTTGGCAGCCTCGTGCTGCTGCGGCGCAAGGACGTCATCGACTCGGCCGGCGTCCTCACCACCCTC TTCCCCATCCTGGTCTCTTCGCCGAGCAAGACTCTGCGCGAGCTGCTCTTCAACAAGATCCTGAGCGATCTGCGC AACTCCAACTCCAAGGCCATCAACCACCCGCTCAACCGCACGATCCAGACCGTCCTGTACAATCTCGTCACCGCC GACCGAGCCTCGCCCCGCGCCATCTGGGCCATCAAGCTGACTCGCGAACTGTGGAAGCGACAAATATGGACGGAT GCGAAGCCCGTTGACGTCATGAAGGAGGCCTGCCTGGCCGACAACGAAAAGGTCGTCGTCGGCGCCGTGCGCTTC TTCCTCGGCGGCGACAAGGAGCGCGAGGAGCTCGAGGACGAGAGCAGCGACGACGACATTGACCTGTCCAAGGTC AGGCACCAGATCGGCATCAACAAGAAGTCGAAGAAGCAGAAGGAGGCGTACAAGAAAGCCGTCGGCAAGGTCAAG AGGAACGAACGCAAGAAGAGCAAGCCCCATCCGCTCAACTTTTCCGCCCTCCACCTGCTTCACGATCCGCAAGAC TTCGCCGAGCAGCTCTTCTCCAAACACCTTCACAACACCAAGGCCAAGCTGTCGCTCGACAGCAAGATCCTGGTG CTACAGCTCGTCACGCGCCTGATCGGCCTCCACAGGCTGACCGTCGTGCCCGTATACTCCTGGTTCATCAAGTAC CTAACGCCACGGCAGCAATCCGTCACATCCTTCCTGGCCTCGCTTGCGCAGGGCACCCACGACCTCGTACCCCCC GATGTGCTTGAGCCGCTGCTCCAAAAGATTGCAAACGAGTTCGTCTCGGAAGCCTCGGCGTCCGAGGTCGCCGCC GCCGGCCTCAACGCCATCCGAGAAGTCTGCGCCCGGCAGCCGCTGGCCATGACGGAAACCCTCCTGCAGGACCTG GTGCAGTATCGCAAGAGCAAGGACAAGGGCGTCATGATGGCCGCCAAGGGGCTGCTGTCGCTGTACAGAGAGGTG GGGGCCGAGCTGCTGAAGAAGAGGGACCGCGGAAAGGAGGCGACGATTGGCCTCAAGGCGGGCCTGCAGCAACAG CGAAAGTTTGGCGATGAACAGGCCGGTGGCATCGAGGGCCTCGATTTGCTGGCGAAGTGGAAGGAGGAGGAAAAG AAGAGGAAGCGGGCTGAGAGGGGGCTTCCGGAGACGGCCGGAAGTGATGAGGACGAGAAGGAGGATGAGGAAGAC GGTTTCAACTCGAGCGATTGGGAAGTCGATTCAGACAACAGCAGCAGCTCCGGGGAATGGATCAATGTCAGCGAT TCCGAGGACGAGCGACCGGCGCCCAAGAAGCAGAAGAAGATGAAGAACCAGAGGAAAGGCGACGGCCCTGACGGG GACGACGACGACAGCAGCGACGACGAAGGCGGCGAAAATGACGACGGGGACCGCGAAGCCGAGCTCGAACGCATG TCCAAGCTAGCCACCACGACGATCCTCACGCCGGCGGACTTGGCGAAGCTGCAGGAACTCCGCGCGGCAGCGTCC ATCGAAAACGCCATGGGTCACCGCCGCAAGAAGGCGCAAGGCGGCGACGCGCGCCACGTCGACGACGGCGTGACG GCGGAGAATATCGAGGCGCCGGCCCGGCTGCGCAAGCTGACCAAGGAGGAGAAGGTGGCGCTGGCCAAGGAGGGC AAGCCGGACCGGGAGGAGCACAAGAGCACGCAGGCGATCCGCAAGTCGAAGAAGGAGGCGGCAGGCAAGAGCACG AGCAACCGCGAGAAGCAGCGCAAGAAGAACTTTCTGATGACGCTGGGCAAGGCCAAGAGCAAGCAGAAGAGGAGC TTGGTGGAGACGAGAAAGGTGCTGAGGGGCCACGTCGAGAGGAGCTCGCGCGGAGGCCGCAGGAGGAACGGCGGG TGA |