© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10528 |
| Gene name | |
| Location | Contig_86:25348..25951 |
| Strand | + |
| Gene length (bp) | 603 |
| Transcript length (bp) | 462 |
| Coding sequence length (bp) | 462 |
| Protein length (aa) | 154 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08881 | CVNH | CVNH domain | 8.6E-09 | 36 | 119 |
| PF08881 | CVNH | CVNH domain | 1.2E-05 | 80 | 139 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1352 | 0.0451 | 0.911 | 0.1295 | 0.0515 | 0.0261 | 0.1936 | 0.1524 | 0.0931 | 0.0018 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 16 | 0.999781 |
| Orthofinder run ID | 4 |
| Orthogroup | 5989 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10528 MFCGLVLLAALGAAVAQLKTQCEFVGFLDSSQEHPVAYTARCSPQPEGKMDVCSKLELSPCLANRNGQLQASRDS STAGFKESCPSCHIDADGWTLSCLCKRMNNQYNYASIDLDTVIYLQNDGIMACSGTVAKQLSECPYTRIGAPPVF SAV* |
| Coding | >Hirsu2|10528 ATGTTCTGCGGCCTGGTCCTGCTCGCTGCCCTCGGGGCGGCAGTTGCCCAACTGAAGACACAATGCGAGTTCGTC GGCTTCTTGGACAGCTCCCAGGAGCATCCCGTCGCGTACACGGCCCGTTGCTCGCCCCAGCCGGAGGGCAAGATG GACGTCTGCTCGAAGCTTGAGCTGTCGCCCTGCCTGGCCAACCGCAACGGCCAGCTGCAGGCCTCGAGGGACAGC AGCACGGCCGGCTTCAAGGAGTCGTGCCCCAGTTGTCACATCGACGCAGACGGATGGACCCTGTCCTGCCTGTGC AAGCGGATGAACAACCAGTACAACTATGCGTCCATCGACCTGGATACCGTCATCTACCTCCAAAACGACGGCATC ATGGCCTGCTCCGGAACGGTCGCCAAGCAGCTATCCGAATGCCCGTACACGCGGATCGGGGCCCCGCCCGTCTTC TCTGCAGTCTGA |
| Transcript | >Hirsu2|10528 ATGTTCTGCGGCCTGGTCCTGCTCGCTGCCCTCGGGGCGGCAGTTGCCCAACTGAAGACACAATGCGAGTTCGTC GGCTTCTTGGACAGCTCCCAGGAGCATCCCGTCGCGTACACGGCCCGTTGCTCGCCCCAGCCGGAGGGCAAGATG GACGTCTGCTCGAAGCTTGAGCTGTCGCCCTGCCTGGCCAACCGCAACGGCCAGCTGCAGGCCTCGAGGGACAGC AGCACGGCCGGCTTCAAGGAGTCGTGCCCCAGTTGTCACATCGACGCAGACGGATGGACCCTGTCCTGCCTGTGC AAGCGGATGAACAACCAGTACAACTATGCGTCCATCGACCTGGATACCGTCATCTACCTCCAAAACGACGGCATC ATGGCCTGCTCCGGAACGGTCGCCAAGCAGCTATCCGAATGCCCGTACACGCGGATCGGGGCCCCGCCCGTCTTC TCTGCAGTCTGA |
| Gene | >Hirsu2|10528 ATGTTCTGCGGCCTGGTCCTGCTCGCTGCCCTCGGGGCGGCAGTTGCCCAACTGAAGACACAATGCGAGTTCGTC GGCTTCTTGGACAGCTCCCAGGAGCATCCCGTCGCGTACACGGCCCGTTGCTCGCCCCAGCCGGAGGGCAAGATG GACGTCTGCTCGAAGCTTGAGCTGTCGCCCTGCCTGGCCAACCGCAACGGCCAGCTGCAGGCCTCGAGGGAGTAT GTCTGCCGCGAGCCGACGAGCAAGACTGCGAGACGGGACGGCTGACGGATGGCACAGCAGCAGCACGGCCGGCTT CAAGGAGTCGTGCCCCAGTTGTCACATCGACGCAGACGGATGGACCCTGTCCTGCCTGTGCAAGCGGATGAACAA CCAGTACAACTATGCGTCCATCGACCTGGGTAAGAAAAACGCCAACCTACCTCACATAGCTCTCCGAGGAATCGG CAAGGCCTCTAACCGCGCATGTCGAGAGAGCCAGATACCGTCATCTACCTCCAAAACGACGGCATCATGGCCTGC TCCGGAACGGTCGCCAAGCAGCTATCCGAATGCCCGTACACGCGGATCGGGGCCCCGCCCGTCTTCTCTGCAGTC TGA |