Protein ID | Hirsu2|10528 |
Gene name | |
Location | Contig_86:25348..25951 |
Strand | + |
Gene length (bp) | 603 |
Transcript length (bp) | 462 |
Coding sequence length (bp) | 462 |
Protein length (aa) | 154 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08881 | CVNH | CVNH domain | 8.6E-09 | 36 | 119 |
PF08881 | CVNH | CVNH domain | 1.2E-05 | 80 | 139 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1352 | 0.0451 | 0.911 | 0.1295 | 0.0515 | 0.0261 | 0.1936 | 0.1524 | 0.0931 | 0.0018 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 16 | 0.999781 |
Orthofinder run ID | 4 |
Orthogroup | 5989 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|10528 MFCGLVLLAALGAAVAQLKTQCEFVGFLDSSQEHPVAYTARCSPQPEGKMDVCSKLELSPCLANRNGQLQASRDS STAGFKESCPSCHIDADGWTLSCLCKRMNNQYNYASIDLDTVIYLQNDGIMACSGTVAKQLSECPYTRIGAPPVF SAV* |
Coding | >Hirsu2|10528 ATGTTCTGCGGCCTGGTCCTGCTCGCTGCCCTCGGGGCGGCAGTTGCCCAACTGAAGACACAATGCGAGTTCGTC GGCTTCTTGGACAGCTCCCAGGAGCATCCCGTCGCGTACACGGCCCGTTGCTCGCCCCAGCCGGAGGGCAAGATG GACGTCTGCTCGAAGCTTGAGCTGTCGCCCTGCCTGGCCAACCGCAACGGCCAGCTGCAGGCCTCGAGGGACAGC AGCACGGCCGGCTTCAAGGAGTCGTGCCCCAGTTGTCACATCGACGCAGACGGATGGACCCTGTCCTGCCTGTGC AAGCGGATGAACAACCAGTACAACTATGCGTCCATCGACCTGGATACCGTCATCTACCTCCAAAACGACGGCATC ATGGCCTGCTCCGGAACGGTCGCCAAGCAGCTATCCGAATGCCCGTACACGCGGATCGGGGCCCCGCCCGTCTTC TCTGCAGTCTGA |
Transcript | >Hirsu2|10528 ATGTTCTGCGGCCTGGTCCTGCTCGCTGCCCTCGGGGCGGCAGTTGCCCAACTGAAGACACAATGCGAGTTCGTC GGCTTCTTGGACAGCTCCCAGGAGCATCCCGTCGCGTACACGGCCCGTTGCTCGCCCCAGCCGGAGGGCAAGATG GACGTCTGCTCGAAGCTTGAGCTGTCGCCCTGCCTGGCCAACCGCAACGGCCAGCTGCAGGCCTCGAGGGACAGC AGCACGGCCGGCTTCAAGGAGTCGTGCCCCAGTTGTCACATCGACGCAGACGGATGGACCCTGTCCTGCCTGTGC AAGCGGATGAACAACCAGTACAACTATGCGTCCATCGACCTGGATACCGTCATCTACCTCCAAAACGACGGCATC ATGGCCTGCTCCGGAACGGTCGCCAAGCAGCTATCCGAATGCCCGTACACGCGGATCGGGGCCCCGCCCGTCTTC TCTGCAGTCTGA |
Gene | >Hirsu2|10528 ATGTTCTGCGGCCTGGTCCTGCTCGCTGCCCTCGGGGCGGCAGTTGCCCAACTGAAGACACAATGCGAGTTCGTC GGCTTCTTGGACAGCTCCCAGGAGCATCCCGTCGCGTACACGGCCCGTTGCTCGCCCCAGCCGGAGGGCAAGATG GACGTCTGCTCGAAGCTTGAGCTGTCGCCCTGCCTGGCCAACCGCAACGGCCAGCTGCAGGCCTCGAGGGAGTAT GTCTGCCGCGAGCCGACGAGCAAGACTGCGAGACGGGACGGCTGACGGATGGCACAGCAGCAGCACGGCCGGCTT CAAGGAGTCGTGCCCCAGTTGTCACATCGACGCAGACGGATGGACCCTGTCCTGCCTGTGCAAGCGGATGAACAA CCAGTACAACTATGCGTCCATCGACCTGGGTAAGAAAAACGCCAACCTACCTCACATAGCTCTCCGAGGAATCGG CAAGGCCTCTAACCGCGCATGTCGAGAGAGCCAGATACCGTCATCTACCTCCAAAACGACGGCATCATGGCCTGC TCCGGAACGGTCGCCAAGCAGCTATCCGAATGCCCGTACACGCGGATCGGGGCCCCGCCCGTCTTCTCTGCAGTC TGA |