© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1052 |
| Gene name | |
| Location | Contig_1217:5491..7396 |
| Strand | - |
| Gene length (bp) | 1905 |
| Transcript length (bp) | 1905 |
| Coding sequence length (bp) | 1905 |
| Protein length (aa) | 635 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02847 | MA3 | MA3 domain | 1.4E-23 | 381 | 486 |
| PF02854 | MIF4G | MIF4G domain | 2.7E-10 | 94 | 276 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5BGP1|CWC22_EMENI | Pre-mRNA-splicing factor cwc22 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc22 PE=3 SV=2 | 39 | 583 | 0.0E+00 |
| sp|Q9VJ87|CWC22_DROME | Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster GN=ncm PE=1 SV=3 | 54 | 583 | 0.0E+00 |
| sp|Q5ZKA3|CWC22_CHICK | Pre-mRNA-splicing factor CWC22 homolog OS=Gallus gallus GN=CWC22 PE=2 SV=2 | 39 | 578 | 0.0E+00 |
| sp|Q8C5N3|CWC22_MOUSE | Pre-mRNA-splicing factor CWC22 homolog OS=Mus musculus GN=Cwc22 PE=1 SV=1 | 11 | 578 | 0.0E+00 |
| sp|Q5RA93|CWC22_PONAB | Pre-mRNA-splicing factor CWC22 homolog OS=Pongo abelii GN=CWC22 PE=2 SV=1 | 21 | 578 | 0.0E+00 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5BGP1|CWC22_EMENI | Pre-mRNA-splicing factor cwc22 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc22 PE=3 SV=2 | 39 | 583 | 0.0E+00 |
| sp|Q9VJ87|CWC22_DROME | Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster GN=ncm PE=1 SV=3 | 54 | 583 | 0.0E+00 |
| sp|Q5ZKA3|CWC22_CHICK | Pre-mRNA-splicing factor CWC22 homolog OS=Gallus gallus GN=CWC22 PE=2 SV=2 | 39 | 578 | 0.0E+00 |
| sp|Q8C5N3|CWC22_MOUSE | Pre-mRNA-splicing factor CWC22 homolog OS=Mus musculus GN=Cwc22 PE=1 SV=1 | 11 | 578 | 0.0E+00 |
| sp|Q5RA93|CWC22_PONAB | Pre-mRNA-splicing factor CWC22 homolog OS=Pongo abelii GN=CWC22 PE=2 SV=1 | 21 | 578 | 0.0E+00 |
| sp|Q08C72|CWC22_DANRE | Pre-mRNA-splicing factor CWC22 homolog OS=Danio rerio GN=cwc22 PE=2 SV=1 | 17 | 578 | 0.0E+00 |
| sp|Q9HCG8|CWC22_HUMAN | Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens GN=CWC22 PE=1 SV=3 | 21 | 578 | 0.0E+00 |
| sp|Q52KN9|CWC22_XENLA | Pre-mRNA-splicing factor CWC22 homolog OS=Xenopus laevis GN=cwc22 PE=2 SV=1 | 35 | 578 | 0.0E+00 |
| sp|Q9P6R9|CWC22_SCHPO | Pre-mRNA-splicing factor cwf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf22 PE=1 SV=3 | 48 | 578 | 0.0E+00 |
| sp|P0CM97|CWC22_CRYNB | Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CWC22 PE=3 SV=1 | 39 | 578 | 0.0E+00 |
| sp|P0CM96|CWC22_CRYNJ | Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC22 PE=3 SV=1 | 39 | 578 | 0.0E+00 |
| sp|Q52B63|CWC22_MAGO7 | Pre-mRNA-splicing factor CWC22 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CWC22 PE=3 SV=1 | 9 | 576 | 0.0E+00 |
| sp|Q7RX84|CWC22_NEUCR | Pre-mRNA-splicing factor cwc22 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=msp-1 PE=3 SV=1 | 15 | 576 | 0.0E+00 |
| sp|Q4WKB9|CWC22_ASPFU | Pre-mRNA-splicing factor cwc22 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc22 PE=3 SV=1 | 39 | 588 | 0.0E+00 |
| sp|Q4PCY0|CWC22_USTMA | Pre-mRNA-splicing factor CWC22 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CWC22 PE=3 SV=2 | 43 | 578 | 0.0E+00 |
| sp|Q17336|CWC22_CAEEL | Pre-mRNA-splicing factor CWC22 homolog OS=Caenorhabditis elegans GN=let-858 PE=2 SV=1 | 54 | 572 | 2.0E-174 |
| sp|A8WT19|CWC22_CAEBR | Pre-mRNA-splicing factor CWC22 homolog OS=Caenorhabditis briggsae GN=let-858 PE=3 SV=2 | 27 | 573 | 8.0E-171 |
| sp|Q6C8C5|CWC22_YARLI | Pre-mRNA-splicing factor CWC22 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CWC22 PE=3 SV=1 | 37 | 576 | 1.0E-170 |
| sp|Q6BU84|CWC22_DEBHA | Pre-mRNA-splicing factor CWC22 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CWC22 PE=3 SV=2 | 49 | 577 | 5.0E-165 |
| sp|Q59XY0|CWC22_CANAL | Pre-mRNA-splicing factor CWC22 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CWC22 PE=3 SV=1 | 84 | 579 | 2.0E-104 |
| sp|Q751P4|CWC22_ASHGO | Pre-mRNA-splicing factor CWC22 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CWC22 PE=3 SV=1 | 82 | 578 | 5.0E-69 |
| sp|P53333|CWC22_YEAST | Pre-mRNA-splicing factor CWC22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CWC22 PE=1 SV=1 | 74 | 573 | 1.0E-56 |
| sp|Q5C9Z4|NOM1_HUMAN | Nucleolar MIF4G domain-containing protein 1 OS=Homo sapiens GN=NOM1 PE=1 SV=1 | 59 | 498 | 1.0E-18 |
| sp|Q3UFM5|NOM1_MOUSE | Nucleolar MIF4G domain-containing protein 1 OS=Mus musculus GN=Nom1 PE=1 SV=2 | 56 | 498 | 2.0E-18 |
| sp|O13971|SGD1_SCHPO | Suppressor of glycerol defect protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sgd1 PE=3 SV=1 | 32 | 475 | 4.0E-17 |
| sp|Q06132|SGD1_YEAST | Suppressor of glycerol defect protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGD1 PE=1 SV=1 | 62 | 458 | 7.0E-08 |
| sp|Q9W020|NOM1_DROME | Nucleolar MIF4G domain-containing protein 1 homolog OS=Drosophila melanogaster GN=CG9004 PE=2 SV=1 | 20 | 494 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.6578 | 0.5784 | 0.1263 | 0.083 | 0.0685 | 0.0148 | 0.0434 | 0.0765 | 0.0892 | 0.006 |
| Orthofinder run ID | 4 |
| Orthogroup | 1267 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1052 MASAKVEMPRRERGRHREGDSYRPARPGRSPPPPPPVRTEEEKQAAAKAEYEKLLNMRSGGTYIPPARLRALQAQ ITDKTSKEYQRMAWEALKKSINGLINKVNTANIKHIVPELFGENLIRGRGLFCRSIMKAQAASLPFTPIYAAMAA IVNSKLPQVGELLIRRLIMQFRKGFKRNDKAVCLSSTTFLAHLINHQVQHEMLAGQILLLLLHKPTDDSVEIAVG FCREVGQYVEEMQPSIAMAVFDQFRNILHEADIDKRTQYMIEVLFQVRKDKFKDNPAIKEELDLVEEEDQITHQV NLEGDVDVQDGLNVFKFDPDWEDNEEAYKNLRAQILGEASDDDDDDDDADGGDDDESSEEEDEATKAMEIKDQSN TDLVNLRRTIYLTIMSSADPEEAVHKLMKVNLPAGQEPELPSMIVECCSQEKTYTKFFGLIGERFAKINRLWCDL FEQAFAKYYETIHRYENNKLRNIAMLFGHMFAEDALGWHCLSVIHLNEDETTSSSRIFIKILFQSIAEEVGMPKL RARMADATLRPSLEGIFPRDSARNVRFAINYFTSIGMGALTEEMREFLQSMPKPALPAPAAGDDDWDWRRVEAQR RRGIDTARHFQALDDVHGLFDGGTHGALGSFGPC* |
| Coding | >Hirsu2|1052 ATGGCATCGGCCAAGGTTGAAATGCCGCGCCGCGAACGCGGCCGCCATCGCGAGGGCGACTCGTACCGTCCGGCC CGGCCCGGGCGCTCGCCGCCGCCGCCGCCGCCGGTGCGCACCGAGGAGGAGAAGCAGGCGGCGGCCAAGGCCGAG TACGAGAAGCTGCTCAACATGCGCTCGGGCGGCACTTACATCCCGCCGGCGCGGCTCCGGGCGCTGCAGGCGCAG ATCACGGACAAGACGAGCAAGGAGTACCAGCGGATGGCGTGGGAGGCGCTCAAGAAGAGCATCAACGGCCTGATC AACAAGGTCAACACGGCAAACATCAAGCACATCGTGCCCGAGCTCTTCGGCGAGAACCTGATCCGCGGCCGCGGC CTCTTCTGCCGCTCCATCATGAAGGCCCAGGCGGCCAGCCTGCCCTTCACCCCCATCTACGCGGCCATGGCGGCC ATCGTCAACTCCAAGCTGCCCCAGGTGGGCGAGCTACTGATCAGGCGGCTCATCATGCAGTTCCGCAAGGGCTTC AAGCGCAACGACAAGGCCGTCTGCCTGTCCTCGACCACCTTCCTCGCCCACCTCATCAACCACCAGGTGCAGCAC GAGATGCTGGCCGGCCAGATCCTGCTGCTGCTGCTGCACAAGCCGACGGACGACAGCGTCGAGATCGCCGTCGGC TTCTGCCGCGAGGTCGGCCAGTACGTCGAGGAGATGCAGCCCTCCATCGCCATGGCCGTCTTCGACCAGTTCAGG AACATCCTGCACGAGGCCGACATCGACAAGCGCACCCAGTACATGATCGAGGTGCTGTTCCAGGTCCGCAAGGAC AAGTTCAAGGATAACCCGGCCATCAAGGAGGAGCTGGACCTCGTCGAGGAGGAGGACCAGATCACGCACCAGGTC AACCTCGAGGGCGACGTCGACGTCCAGGACGGCCTCAACGTCTTCAAGTTCGACCCCGATTGGGAAGACAACGAA GAGGCCTACAAGAACTTGAGGGCCCAGATCTTGGGCGAGGCGAGCGATGATGATGACGACGACGACGACGCCGAC GGGGGCGACGACGACGAAAGCTCCGAGGAAGAGGACGAGGCGACAAAGGCGATGGAGATCAAGGACCAGTCCAAC ACCGACCTGGTGAACCTCAGGAGGACCATCTACCTGACCATCATGTCGAGCGCCGATCCGGAGGAGGCCGTGCAC AAGCTCATGAAGGTCAACCTGCCCGCCGGCCAGGAGCCGGAGCTGCCCTCGATGATCGTCGAGTGCTGCTCCCAG GAGAAGACGTACACCAAGTTCTTCGGCCTCATCGGCGAGCGCTTCGCCAAGATCAACCGGCTGTGGTGCGACCTC TTCGAGCAGGCCTTCGCCAAGTACTACGAAACCATCCACCGCTACGAGAACAACAAGCTGCGCAACATCGCCATG CTCTTCGGCCACATGTTCGCCGAGGACGCGCTCGGCTGGCACTGCCTGTCCGTCATCCACCTGAACGAGGACGAG ACGACGTCGAGCAGCCGCATCTTCATCAAGATCCTCTTCCAGAGCATCGCCGAGGAGGTCGGCATGCCCAAGCTC AGGGCCAGGATGGCGGACGCGACGCTGCGGCCCAGCCTCGAGGGCATATTCCCCCGGGACAGCGCGCGCAACGTC CGGTTCGCCATCAACTACTTCACCAGCATCGGCATGGGCGCCCTGACGGAGGAGATGCGCGAGTTCCTGCAGAGC ATGCCCAAGCCGGCCTTGCCCGCGCCCGCCGCCGGCGACGACGACTGGGACTGGCGCCGCGTCGAGGCCCAGCGC CGGAGGGGCATCGACACAGCCCGCCACTTCCAGGCCCTCGACGACGTGCACGGCCTGTTCGATGGCGGCACCCAC GGCGCGCTCGGCTCCTTTGGCCCCTGCTGA |
| Transcript | >Hirsu2|1052 ATGGCATCGGCCAAGGTTGAAATGCCGCGCCGCGAACGCGGCCGCCATCGCGAGGGCGACTCGTACCGTCCGGCC CGGCCCGGGCGCTCGCCGCCGCCGCCGCCGCCGGTGCGCACCGAGGAGGAGAAGCAGGCGGCGGCCAAGGCCGAG TACGAGAAGCTGCTCAACATGCGCTCGGGCGGCACTTACATCCCGCCGGCGCGGCTCCGGGCGCTGCAGGCGCAG ATCACGGACAAGACGAGCAAGGAGTACCAGCGGATGGCGTGGGAGGCGCTCAAGAAGAGCATCAACGGCCTGATC AACAAGGTCAACACGGCAAACATCAAGCACATCGTGCCCGAGCTCTTCGGCGAGAACCTGATCCGCGGCCGCGGC CTCTTCTGCCGCTCCATCATGAAGGCCCAGGCGGCCAGCCTGCCCTTCACCCCCATCTACGCGGCCATGGCGGCC ATCGTCAACTCCAAGCTGCCCCAGGTGGGCGAGCTACTGATCAGGCGGCTCATCATGCAGTTCCGCAAGGGCTTC AAGCGCAACGACAAGGCCGTCTGCCTGTCCTCGACCACCTTCCTCGCCCACCTCATCAACCACCAGGTGCAGCAC GAGATGCTGGCCGGCCAGATCCTGCTGCTGCTGCTGCACAAGCCGACGGACGACAGCGTCGAGATCGCCGTCGGC TTCTGCCGCGAGGTCGGCCAGTACGTCGAGGAGATGCAGCCCTCCATCGCCATGGCCGTCTTCGACCAGTTCAGG AACATCCTGCACGAGGCCGACATCGACAAGCGCACCCAGTACATGATCGAGGTGCTGTTCCAGGTCCGCAAGGAC AAGTTCAAGGATAACCCGGCCATCAAGGAGGAGCTGGACCTCGTCGAGGAGGAGGACCAGATCACGCACCAGGTC AACCTCGAGGGCGACGTCGACGTCCAGGACGGCCTCAACGTCTTCAAGTTCGACCCCGATTGGGAAGACAACGAA GAGGCCTACAAGAACTTGAGGGCCCAGATCTTGGGCGAGGCGAGCGATGATGATGACGACGACGACGACGCCGAC GGGGGCGACGACGACGAAAGCTCCGAGGAAGAGGACGAGGCGACAAAGGCGATGGAGATCAAGGACCAGTCCAAC ACCGACCTGGTGAACCTCAGGAGGACCATCTACCTGACCATCATGTCGAGCGCCGATCCGGAGGAGGCCGTGCAC AAGCTCATGAAGGTCAACCTGCCCGCCGGCCAGGAGCCGGAGCTGCCCTCGATGATCGTCGAGTGCTGCTCCCAG GAGAAGACGTACACCAAGTTCTTCGGCCTCATCGGCGAGCGCTTCGCCAAGATCAACCGGCTGTGGTGCGACCTC TTCGAGCAGGCCTTCGCCAAGTACTACGAAACCATCCACCGCTACGAGAACAACAAGCTGCGCAACATCGCCATG CTCTTCGGCCACATGTTCGCCGAGGACGCGCTCGGCTGGCACTGCCTGTCCGTCATCCACCTGAACGAGGACGAG ACGACGTCGAGCAGCCGCATCTTCATCAAGATCCTCTTCCAGAGCATCGCCGAGGAGGTCGGCATGCCCAAGCTC AGGGCCAGGATGGCGGACGCGACGCTGCGGCCCAGCCTCGAGGGCATATTCCCCCGGGACAGCGCGCGCAACGTC CGGTTCGCCATCAACTACTTCACCAGCATCGGCATGGGCGCCCTGACGGAGGAGATGCGCGAGTTCCTGCAGAGC ATGCCCAAGCCGGCCTTGCCCGCGCCCGCCGCCGGCGACGACGACTGGGACTGGCGCCGCGTCGAGGCCCAGCGC CGGAGGGGCATCGACACAGCCCGCCACTTCCAGGCCCTCGACGACGTGCACGGCCTGTTCGATGGCGGCACCCAC GGCGCGCTCGGCTCCTTTGGCCCCTGCTGA |
| Gene | >Hirsu2|1052 ATGGCATCGGCCAAGGTTGAAATGCCGCGCCGCGAACGCGGCCGCCATCGCGAGGGCGACTCGTACCGTCCGGCC CGGCCCGGGCGCTCGCCGCCGCCGCCGCCGCCGGTGCGCACCGAGGAGGAGAAGCAGGCGGCGGCCAAGGCCGAG TACGAGAAGCTGCTCAACATGCGCTCGGGCGGCACTTACATCCCGCCGGCGCGGCTCCGGGCGCTGCAGGCGCAG ATCACGGACAAGACGAGCAAGGAGTACCAGCGGATGGCGTGGGAGGCGCTCAAGAAGAGCATCAACGGCCTGATC AACAAGGTCAACACGGCAAACATCAAGCACATCGTGCCCGAGCTCTTCGGCGAGAACCTGATCCGCGGCCGCGGC CTCTTCTGCCGCTCCATCATGAAGGCCCAGGCGGCCAGCCTGCCCTTCACCCCCATCTACGCGGCCATGGCGGCC ATCGTCAACTCCAAGCTGCCCCAGGTGGGCGAGCTACTGATCAGGCGGCTCATCATGCAGTTCCGCAAGGGCTTC AAGCGCAACGACAAGGCCGTCTGCCTGTCCTCGACCACCTTCCTCGCCCACCTCATCAACCACCAGGTGCAGCAC GAGATGCTGGCCGGCCAGATCCTGCTGCTGCTGCTGCACAAGCCGACGGACGACAGCGTCGAGATCGCCGTCGGC TTCTGCCGCGAGGTCGGCCAGTACGTCGAGGAGATGCAGCCCTCCATCGCCATGGCCGTCTTCGACCAGTTCAGG AACATCCTGCACGAGGCCGACATCGACAAGCGCACCCAGTACATGATCGAGGTGCTGTTCCAGGTCCGCAAGGAC AAGTTCAAGGATAACCCGGCCATCAAGGAGGAGCTGGACCTCGTCGAGGAGGAGGACCAGATCACGCACCAGGTC AACCTCGAGGGCGACGTCGACGTCCAGGACGGCCTCAACGTCTTCAAGTTCGACCCCGATTGGGAAGACAACGAA GAGGCCTACAAGAACTTGAGGGCCCAGATCTTGGGCGAGGCGAGCGATGATGATGACGACGACGACGACGCCGAC GGGGGCGACGACGACGAAAGCTCCGAGGAAGAGGACGAGGCGACAAAGGCGATGGAGATCAAGGACCAGTCCAAC ACCGACCTGGTGAACCTCAGGAGGACCATCTACCTGACCATCATGTCGAGCGCCGATCCGGAGGAGGCCGTGCAC AAGCTCATGAAGGTCAACCTGCCCGCCGGCCAGGAGCCGGAGCTGCCCTCGATGATCGTCGAGTGCTGCTCCCAG GAGAAGACGTACACCAAGTTCTTCGGCCTCATCGGCGAGCGCTTCGCCAAGATCAACCGGCTGTGGTGCGACCTC TTCGAGCAGGCCTTCGCCAAGTACTACGAAACCATCCACCGCTACGAGAACAACAAGCTGCGCAACATCGCCATG CTCTTCGGCCACATGTTCGCCGAGGACGCGCTCGGCTGGCACTGCCTGTCCGTCATCCACCTGAACGAGGACGAG ACGACGTCGAGCAGCCGCATCTTCATCAAGATCCTCTTCCAGAGCATCGCCGAGGAGGTCGGCATGCCCAAGCTC AGGGCCAGGATGGCGGACGCGACGCTGCGGCCCAGCCTCGAGGGCATATTCCCCCGGGACAGCGCGCGCAACGTC CGGTTCGCCATCAACTACTTCACCAGCATCGGCATGGGCGCCCTGACGGAGGAGATGCGCGAGTTCCTGCAGAGC ATGCCCAAGCCGGCCTTGCCCGCGCCCGCCGCCGGCGACGACGACTGGGACTGGCGCCGCGTCGAGGCCCAGCGC CGGAGGGGCATCGACACAGCCCGCCACTTCCAGGCCCTCGACGACGTGCACGGCCTGTTCGATGGCGGCACCCAC GGCGCGCTCGGCTCCTTTGGCCCCTGCTGA |