Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1052
Gene name
LocationContig_1217:5491..7396
Strand-
Gene length (bp)1905
Transcript length (bp)1905
Coding sequence length (bp)1905
Protein length (aa) 635

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02847 MA3 MA3 domain 1.3E-23 381 486
PF02854 MIF4G MIF4G domain 2.4E-10 94 276

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5BGP1|CWC22_EMENI Pre-mRNA-splicing factor cwc22 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc22 PE=3 SV=2 39 583 0.0E+00
sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster GN=ncm PE=1 SV=3 54 583 0.0E+00
sp|Q5ZKA3|CWC22_CHICK Pre-mRNA-splicing factor CWC22 homolog OS=Gallus gallus GN=CWC22 PE=2 SV=2 39 578 0.0E+00
sp|Q8C5N3|CWC22_MOUSE Pre-mRNA-splicing factor CWC22 homolog OS=Mus musculus GN=Cwc22 PE=1 SV=1 11 578 0.0E+00
sp|Q5RA93|CWC22_PONAB Pre-mRNA-splicing factor CWC22 homolog OS=Pongo abelii GN=CWC22 PE=2 SV=1 21 578 0.0E+00
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Swissprot ID Swissprot Description Start End E-value
sp|Q5BGP1|CWC22_EMENI Pre-mRNA-splicing factor cwc22 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc22 PE=3 SV=2 39 583 0.0E+00
sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster GN=ncm PE=1 SV=3 54 583 0.0E+00
sp|Q5ZKA3|CWC22_CHICK Pre-mRNA-splicing factor CWC22 homolog OS=Gallus gallus GN=CWC22 PE=2 SV=2 39 578 0.0E+00
sp|Q8C5N3|CWC22_MOUSE Pre-mRNA-splicing factor CWC22 homolog OS=Mus musculus GN=Cwc22 PE=1 SV=1 11 578 0.0E+00
sp|Q5RA93|CWC22_PONAB Pre-mRNA-splicing factor CWC22 homolog OS=Pongo abelii GN=CWC22 PE=2 SV=1 21 578 0.0E+00
sp|Q08C72|CWC22_DANRE Pre-mRNA-splicing factor CWC22 homolog OS=Danio rerio GN=cwc22 PE=2 SV=1 17 578 0.0E+00
sp|Q9HCG8|CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens GN=CWC22 PE=1 SV=3 21 578 0.0E+00
sp|Q52KN9|CWC22_XENLA Pre-mRNA-splicing factor CWC22 homolog OS=Xenopus laevis GN=cwc22 PE=2 SV=1 35 578 0.0E+00
sp|Q9P6R9|CWC22_SCHPO Pre-mRNA-splicing factor cwf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf22 PE=1 SV=3 48 578 0.0E+00
sp|P0CM97|CWC22_CRYNB Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CWC22 PE=3 SV=1 39 578 0.0E+00
sp|P0CM96|CWC22_CRYNJ Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC22 PE=3 SV=1 39 578 0.0E+00
sp|Q52B63|CWC22_MAGO7 Pre-mRNA-splicing factor CWC22 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CWC22 PE=3 SV=1 9 576 0.0E+00
sp|Q7RX84|CWC22_NEUCR Pre-mRNA-splicing factor cwc22 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=msp-1 PE=3 SV=1 15 576 0.0E+00
sp|Q4WKB9|CWC22_ASPFU Pre-mRNA-splicing factor cwc22 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc22 PE=3 SV=1 39 588 0.0E+00
sp|Q4PCY0|CWC22_USTMA Pre-mRNA-splicing factor CWC22 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CWC22 PE=3 SV=2 43 578 0.0E+00
sp|Q17336|CWC22_CAEEL Pre-mRNA-splicing factor CWC22 homolog OS=Caenorhabditis elegans GN=let-858 PE=2 SV=1 54 572 2.0E-174
sp|A8WT19|CWC22_CAEBR Pre-mRNA-splicing factor CWC22 homolog OS=Caenorhabditis briggsae GN=let-858 PE=3 SV=2 27 573 8.0E-171
sp|Q6C8C5|CWC22_YARLI Pre-mRNA-splicing factor CWC22 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CWC22 PE=3 SV=1 37 576 1.0E-170
sp|Q6BU84|CWC22_DEBHA Pre-mRNA-splicing factor CWC22 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CWC22 PE=3 SV=2 49 577 5.0E-165
sp|Q59XY0|CWC22_CANAL Pre-mRNA-splicing factor CWC22 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CWC22 PE=3 SV=1 84 579 2.0E-104
sp|Q751P4|CWC22_ASHGO Pre-mRNA-splicing factor CWC22 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CWC22 PE=3 SV=1 82 578 5.0E-69
sp|P53333|CWC22_YEAST Pre-mRNA-splicing factor CWC22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CWC22 PE=1 SV=1 74 573 1.0E-56
sp|Q5C9Z4|NOM1_HUMAN Nucleolar MIF4G domain-containing protein 1 OS=Homo sapiens GN=NOM1 PE=1 SV=1 59 498 1.0E-18
sp|Q3UFM5|NOM1_MOUSE Nucleolar MIF4G domain-containing protein 1 OS=Mus musculus GN=Nom1 PE=1 SV=2 56 498 2.0E-18
sp|O13971|SGD1_SCHPO Suppressor of glycerol defect protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sgd1 PE=3 SV=1 32 475 4.0E-17
sp|Q06132|SGD1_YEAST Suppressor of glycerol defect protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGD1 PE=1 SV=1 62 458 7.0E-08
sp|Q9W020|NOM1_DROME Nucleolar MIF4G domain-containing protein 1 homolog OS=Drosophila melanogaster GN=CG9004 PE=2 SV=1 20 494 1.0E-07
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GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0003723 RNA binding Yes
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 44 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1052
MASAKVEMPRRERGRHREGDSYRPARPGRSPPPPPPVRTEEEKQAAAKAEYEKLLNMRSGGTYIPPARLRALQAQ
ITDKTSKEYQRMAWEALKKSINGLINKVNTANIKHIVPELFGENLIRGRGLFCRSIMKAQAASLPFTPIYAAMAA
IVNSKLPQVGELLIRRLIMQFRKGFKRNDKAVCLSSTTFLAHLINHQVQHEMLAGQILLLLLHKPTDDSVEIAVG
FCREVGQYVEEMQPSIAMAVFDQFRNILHEADIDKRTQYMIEVLFQVRKDKFKDNPAIKEELDLVEEEDQITHQV
NLEGDVDVQDGLNVFKFDPDWEDNEEAYKNLRAQILGEASDDDDDDDDADGGDDDESSEEEDEATKAMEIKDQSN
TDLVNLRRTIYLTIMSSADPEEAVHKLMKVNLPAGQEPELPSMIVECCSQEKTYTKFFGLIGERFAKINRLWCDL
FEQAFAKYYETIHRYENNKLRNIAMLFGHMFAEDALGWHCLSVIHLNEDETTSSSRIFIKILFQSIAEEVGMPKL
RARMADATLRPSLEGIFPRDSARNVRFAINYFTSIGMGALTEEMREFLQSMPKPALPAPAAGDDDWDWRRVEAQR
RRGIDTARHFQALDDVHGLFDGGTHGALGSFGPC*
Coding >Hirsu2|1052
ATGGCATCGGCCAAGGTTGAAATGCCGCGCCGCGAACGCGGCCGCCATCGCGAGGGCGACTCGTACCGTCCGGCC
CGGCCCGGGCGCTCGCCGCCGCCGCCGCCGCCGGTGCGCACCGAGGAGGAGAAGCAGGCGGCGGCCAAGGCCGAG
TACGAGAAGCTGCTCAACATGCGCTCGGGCGGCACTTACATCCCGCCGGCGCGGCTCCGGGCGCTGCAGGCGCAG
ATCACGGACAAGACGAGCAAGGAGTACCAGCGGATGGCGTGGGAGGCGCTCAAGAAGAGCATCAACGGCCTGATC
AACAAGGTCAACACGGCAAACATCAAGCACATCGTGCCCGAGCTCTTCGGCGAGAACCTGATCCGCGGCCGCGGC
CTCTTCTGCCGCTCCATCATGAAGGCCCAGGCGGCCAGCCTGCCCTTCACCCCCATCTACGCGGCCATGGCGGCC
ATCGTCAACTCCAAGCTGCCCCAGGTGGGCGAGCTACTGATCAGGCGGCTCATCATGCAGTTCCGCAAGGGCTTC
AAGCGCAACGACAAGGCCGTCTGCCTGTCCTCGACCACCTTCCTCGCCCACCTCATCAACCACCAGGTGCAGCAC
GAGATGCTGGCCGGCCAGATCCTGCTGCTGCTGCTGCACAAGCCGACGGACGACAGCGTCGAGATCGCCGTCGGC
TTCTGCCGCGAGGTCGGCCAGTACGTCGAGGAGATGCAGCCCTCCATCGCCATGGCCGTCTTCGACCAGTTCAGG
AACATCCTGCACGAGGCCGACATCGACAAGCGCACCCAGTACATGATCGAGGTGCTGTTCCAGGTCCGCAAGGAC
AAGTTCAAGGATAACCCGGCCATCAAGGAGGAGCTGGACCTCGTCGAGGAGGAGGACCAGATCACGCACCAGGTC
AACCTCGAGGGCGACGTCGACGTCCAGGACGGCCTCAACGTCTTCAAGTTCGACCCCGATTGGGAAGACAACGAA
GAGGCCTACAAGAACTTGAGGGCCCAGATCTTGGGCGAGGCGAGCGATGATGATGACGACGACGACGACGCCGAC
GGGGGCGACGACGACGAAAGCTCCGAGGAAGAGGACGAGGCGACAAAGGCGATGGAGATCAAGGACCAGTCCAAC
ACCGACCTGGTGAACCTCAGGAGGACCATCTACCTGACCATCATGTCGAGCGCCGATCCGGAGGAGGCCGTGCAC
AAGCTCATGAAGGTCAACCTGCCCGCCGGCCAGGAGCCGGAGCTGCCCTCGATGATCGTCGAGTGCTGCTCCCAG
GAGAAGACGTACACCAAGTTCTTCGGCCTCATCGGCGAGCGCTTCGCCAAGATCAACCGGCTGTGGTGCGACCTC
TTCGAGCAGGCCTTCGCCAAGTACTACGAAACCATCCACCGCTACGAGAACAACAAGCTGCGCAACATCGCCATG
CTCTTCGGCCACATGTTCGCCGAGGACGCGCTCGGCTGGCACTGCCTGTCCGTCATCCACCTGAACGAGGACGAG
ACGACGTCGAGCAGCCGCATCTTCATCAAGATCCTCTTCCAGAGCATCGCCGAGGAGGTCGGCATGCCCAAGCTC
AGGGCCAGGATGGCGGACGCGACGCTGCGGCCCAGCCTCGAGGGCATATTCCCCCGGGACAGCGCGCGCAACGTC
CGGTTCGCCATCAACTACTTCACCAGCATCGGCATGGGCGCCCTGACGGAGGAGATGCGCGAGTTCCTGCAGAGC
ATGCCCAAGCCGGCCTTGCCCGCGCCCGCCGCCGGCGACGACGACTGGGACTGGCGCCGCGTCGAGGCCCAGCGC
CGGAGGGGCATCGACACAGCCCGCCACTTCCAGGCCCTCGACGACGTGCACGGCCTGTTCGATGGCGGCACCCAC
GGCGCGCTCGGCTCCTTTGGCCCCTGCTGA
Transcript >Hirsu2|1052
ATGGCATCGGCCAAGGTTGAAATGCCGCGCCGCGAACGCGGCCGCCATCGCGAGGGCGACTCGTACCGTCCGGCC
CGGCCCGGGCGCTCGCCGCCGCCGCCGCCGCCGGTGCGCACCGAGGAGGAGAAGCAGGCGGCGGCCAAGGCCGAG
TACGAGAAGCTGCTCAACATGCGCTCGGGCGGCACTTACATCCCGCCGGCGCGGCTCCGGGCGCTGCAGGCGCAG
ATCACGGACAAGACGAGCAAGGAGTACCAGCGGATGGCGTGGGAGGCGCTCAAGAAGAGCATCAACGGCCTGATC
AACAAGGTCAACACGGCAAACATCAAGCACATCGTGCCCGAGCTCTTCGGCGAGAACCTGATCCGCGGCCGCGGC
CTCTTCTGCCGCTCCATCATGAAGGCCCAGGCGGCCAGCCTGCCCTTCACCCCCATCTACGCGGCCATGGCGGCC
ATCGTCAACTCCAAGCTGCCCCAGGTGGGCGAGCTACTGATCAGGCGGCTCATCATGCAGTTCCGCAAGGGCTTC
AAGCGCAACGACAAGGCCGTCTGCCTGTCCTCGACCACCTTCCTCGCCCACCTCATCAACCACCAGGTGCAGCAC
GAGATGCTGGCCGGCCAGATCCTGCTGCTGCTGCTGCACAAGCCGACGGACGACAGCGTCGAGATCGCCGTCGGC
TTCTGCCGCGAGGTCGGCCAGTACGTCGAGGAGATGCAGCCCTCCATCGCCATGGCCGTCTTCGACCAGTTCAGG
AACATCCTGCACGAGGCCGACATCGACAAGCGCACCCAGTACATGATCGAGGTGCTGTTCCAGGTCCGCAAGGAC
AAGTTCAAGGATAACCCGGCCATCAAGGAGGAGCTGGACCTCGTCGAGGAGGAGGACCAGATCACGCACCAGGTC
AACCTCGAGGGCGACGTCGACGTCCAGGACGGCCTCAACGTCTTCAAGTTCGACCCCGATTGGGAAGACAACGAA
GAGGCCTACAAGAACTTGAGGGCCCAGATCTTGGGCGAGGCGAGCGATGATGATGACGACGACGACGACGCCGAC
GGGGGCGACGACGACGAAAGCTCCGAGGAAGAGGACGAGGCGACAAAGGCGATGGAGATCAAGGACCAGTCCAAC
ACCGACCTGGTGAACCTCAGGAGGACCATCTACCTGACCATCATGTCGAGCGCCGATCCGGAGGAGGCCGTGCAC
AAGCTCATGAAGGTCAACCTGCCCGCCGGCCAGGAGCCGGAGCTGCCCTCGATGATCGTCGAGTGCTGCTCCCAG
GAGAAGACGTACACCAAGTTCTTCGGCCTCATCGGCGAGCGCTTCGCCAAGATCAACCGGCTGTGGTGCGACCTC
TTCGAGCAGGCCTTCGCCAAGTACTACGAAACCATCCACCGCTACGAGAACAACAAGCTGCGCAACATCGCCATG
CTCTTCGGCCACATGTTCGCCGAGGACGCGCTCGGCTGGCACTGCCTGTCCGTCATCCACCTGAACGAGGACGAG
ACGACGTCGAGCAGCCGCATCTTCATCAAGATCCTCTTCCAGAGCATCGCCGAGGAGGTCGGCATGCCCAAGCTC
AGGGCCAGGATGGCGGACGCGACGCTGCGGCCCAGCCTCGAGGGCATATTCCCCCGGGACAGCGCGCGCAACGTC
CGGTTCGCCATCAACTACTTCACCAGCATCGGCATGGGCGCCCTGACGGAGGAGATGCGCGAGTTCCTGCAGAGC
ATGCCCAAGCCGGCCTTGCCCGCGCCCGCCGCCGGCGACGACGACTGGGACTGGCGCCGCGTCGAGGCCCAGCGC
CGGAGGGGCATCGACACAGCCCGCCACTTCCAGGCCCTCGACGACGTGCACGGCCTGTTCGATGGCGGCACCCAC
GGCGCGCTCGGCTCCTTTGGCCCCTGCTGA
Gene >Hirsu2|1052
ATGGCATCGGCCAAGGTTGAAATGCCGCGCCGCGAACGCGGCCGCCATCGCGAGGGCGACTCGTACCGTCCGGCC
CGGCCCGGGCGCTCGCCGCCGCCGCCGCCGCCGGTGCGCACCGAGGAGGAGAAGCAGGCGGCGGCCAAGGCCGAG
TACGAGAAGCTGCTCAACATGCGCTCGGGCGGCACTTACATCCCGCCGGCGCGGCTCCGGGCGCTGCAGGCGCAG
ATCACGGACAAGACGAGCAAGGAGTACCAGCGGATGGCGTGGGAGGCGCTCAAGAAGAGCATCAACGGCCTGATC
AACAAGGTCAACACGGCAAACATCAAGCACATCGTGCCCGAGCTCTTCGGCGAGAACCTGATCCGCGGCCGCGGC
CTCTTCTGCCGCTCCATCATGAAGGCCCAGGCGGCCAGCCTGCCCTTCACCCCCATCTACGCGGCCATGGCGGCC
ATCGTCAACTCCAAGCTGCCCCAGGTGGGCGAGCTACTGATCAGGCGGCTCATCATGCAGTTCCGCAAGGGCTTC
AAGCGCAACGACAAGGCCGTCTGCCTGTCCTCGACCACCTTCCTCGCCCACCTCATCAACCACCAGGTGCAGCAC
GAGATGCTGGCCGGCCAGATCCTGCTGCTGCTGCTGCACAAGCCGACGGACGACAGCGTCGAGATCGCCGTCGGC
TTCTGCCGCGAGGTCGGCCAGTACGTCGAGGAGATGCAGCCCTCCATCGCCATGGCCGTCTTCGACCAGTTCAGG
AACATCCTGCACGAGGCCGACATCGACAAGCGCACCCAGTACATGATCGAGGTGCTGTTCCAGGTCCGCAAGGAC
AAGTTCAAGGATAACCCGGCCATCAAGGAGGAGCTGGACCTCGTCGAGGAGGAGGACCAGATCACGCACCAGGTC
AACCTCGAGGGCGACGTCGACGTCCAGGACGGCCTCAACGTCTTCAAGTTCGACCCCGATTGGGAAGACAACGAA
GAGGCCTACAAGAACTTGAGGGCCCAGATCTTGGGCGAGGCGAGCGATGATGATGACGACGACGACGACGCCGAC
GGGGGCGACGACGACGAAAGCTCCGAGGAAGAGGACGAGGCGACAAAGGCGATGGAGATCAAGGACCAGTCCAAC
ACCGACCTGGTGAACCTCAGGAGGACCATCTACCTGACCATCATGTCGAGCGCCGATCCGGAGGAGGCCGTGCAC
AAGCTCATGAAGGTCAACCTGCCCGCCGGCCAGGAGCCGGAGCTGCCCTCGATGATCGTCGAGTGCTGCTCCCAG
GAGAAGACGTACACCAAGTTCTTCGGCCTCATCGGCGAGCGCTTCGCCAAGATCAACCGGCTGTGGTGCGACCTC
TTCGAGCAGGCCTTCGCCAAGTACTACGAAACCATCCACCGCTACGAGAACAACAAGCTGCGCAACATCGCCATG
CTCTTCGGCCACATGTTCGCCGAGGACGCGCTCGGCTGGCACTGCCTGTCCGTCATCCACCTGAACGAGGACGAG
ACGACGTCGAGCAGCCGCATCTTCATCAAGATCCTCTTCCAGAGCATCGCCGAGGAGGTCGGCATGCCCAAGCTC
AGGGCCAGGATGGCGGACGCGACGCTGCGGCCCAGCCTCGAGGGCATATTCCCCCGGGACAGCGCGCGCAACGTC
CGGTTCGCCATCAACTACTTCACCAGCATCGGCATGGGCGCCCTGACGGAGGAGATGCGCGAGTTCCTGCAGAGC
ATGCCCAAGCCGGCCTTGCCCGCGCCCGCCGCCGGCGACGACGACTGGGACTGGCGCCGCGTCGAGGCCCAGCGC
CGGAGGGGCATCGACACAGCCCGCCACTTCCAGGCCCTCGACGACGTGCACGGCCTGTTCGATGGCGGCACCCAC
GGCGCGCTCGGCTCCTTTGGCCCCTGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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