© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|105 |
| Gene name | |
| Location | Contig_1014:7275..8325 |
| Strand | - |
| Gene length (bp) | 1050 |
| Transcript length (bp) | 1050 |
| Coding sequence length (bp) | 1050 |
| Protein length (aa) | 350 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.2739 | 0.2038 | 0.438 | 0.1866 | 0.7213 | 0.2716 | 0.3508 | 0.2886 | 0.1963 | 0.1016 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 31 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 8504 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|105 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|105 MATNVDGRATKIALGVFGIFTSLIALVSIVVRQSRRRASRARARAGPKPEPEVVKRDLKKWYRAALDQIVAARVD KETSTEHGEPVFLSHYASGGHFRHWVLHTHGAKYELRQTGVDGAGRKLYAAAVGPSDFDLEAYRRSVTANYAPEL GHYFYSMIGWTALTRAQVDEASARAEAGFGPYALLSNNCHDFLQRLAERVVTTRAPDWAWFRSDSLLDSYSYSQR PALNDWAIYAATRKRHLERSRHYLDGAEQRRVDDVIALLEDMIEQQVLRSVMMQMAGAQQQLLLQDNGGGGGGDG GGGGGAQLDGGCDGGGGGGGGGDGGGGGGGGGDGGGGGGGGGGGGGGGC* |
| Coding | >Hirsu2|105 ATGGCTACCAATGTCGACGGGCGGGCGACGAAGATTGCGCTCGGTGTTTTTGGCATCTTCACCTCCCTGATCGCT CTCGTGTCAATCGTCGTTCGCCAGTCGCGAAGGCGGGCCAGTCGGGCCCGGGCCAGGGCCGGGCCGAAGCCGGAG CCGGAGGTGGTCAAGCGGGACCTGAAGAAGTGGTACCGGGCGGCGCTGGACCAGATCGTGGCGGCGCGGGTGGAC AAGGAGACGAGCACGGAGCACGGCGAGCCCGTCTTCCTGTCGCACTACGCCAGCGGCGGCCACTTCCGGCACTGG GTCCTGCACACGCACGGGGCCAAGTACGAGCTGCGGCAGACGGGCGTCGACGGCGCCGGCCGCAAGCTGTACGCG GCCGCCGTCGGCCCGTCCGACTTCGACCTCGAGGCCTACCGCCGGTCGGTGACGGCCAACTACGCGCCCGAGCTG GGCCACTACTTCTACAGCATGATCGGCTGGACGGCCCTGACGCGGGCCCAGGTCGACGAGGCGTCGGCCCGCGCC GAAGCCGGCTTCGGCCCCTACGCCCTCCTCTCCAACAACTGCCACGACTTCCTGCAGCGGCTGGCCGAGCGCGTC GTCACCACCCGCGCCCCCGACTGGGCCTGGTTCCGCAGCGACAGCCTGCTCGACAGCTACTCCTACTCGCAGCGG CCGGCCCTCAACGACTGGGCCATCTACGCCGCCACCCGCAAGCGCCACCTCGAGCGCTCCCGCCACTACCTCGAC GGGGCCGAGCAGCGCCGCGTCGACGACGTCATCGCCCTGCTGGAGGACATGATCGAGCAGCAGGTCCTCCGCTCC GTCATGATGCAGATGGCCGGCGCCCAGCAGCAGCTGCTGCTGCAGGACAACGGCGGCGGCGGCGGCGGCGACGGA GGCGGTGGCGGCGGCGCTCAACTGGACGGCGGCTGTGATGGCGGTGGCGGTGGCGGTGGTGGTGGTGATGGCGGG GGAGGCGGAGGAGGCGGCGGTGACGGCGGCGGAGGAGGCGGAGGAGGCGGCGGCGGGGGAGGCGGAGGATGCTGA |
| Transcript | >Hirsu2|105 ATGGCTACCAATGTCGACGGGCGGGCGACGAAGATTGCGCTCGGTGTTTTTGGCATCTTCACCTCCCTGATCGCT CTCGTGTCAATCGTCGTTCGCCAGTCGCGAAGGCGGGCCAGTCGGGCCCGGGCCAGGGCCGGGCCGAAGCCGGAG CCGGAGGTGGTCAAGCGGGACCTGAAGAAGTGGTACCGGGCGGCGCTGGACCAGATCGTGGCGGCGCGGGTGGAC AAGGAGACGAGCACGGAGCACGGCGAGCCCGTCTTCCTGTCGCACTACGCCAGCGGCGGCCACTTCCGGCACTGG GTCCTGCACACGCACGGGGCCAAGTACGAGCTGCGGCAGACGGGCGTCGACGGCGCCGGCCGCAAGCTGTACGCG GCCGCCGTCGGCCCGTCCGACTTCGACCTCGAGGCCTACCGCCGGTCGGTGACGGCCAACTACGCGCCCGAGCTG GGCCACTACTTCTACAGCATGATCGGCTGGACGGCCCTGACGCGGGCCCAGGTCGACGAGGCGTCGGCCCGCGCC GAAGCCGGCTTCGGCCCCTACGCCCTCCTCTCCAACAACTGCCACGACTTCCTGCAGCGGCTGGCCGAGCGCGTC GTCACCACCCGCGCCCCCGACTGGGCCTGGTTCCGCAGCGACAGCCTGCTCGACAGCTACTCCTACTCGCAGCGG CCGGCCCTCAACGACTGGGCCATCTACGCCGCCACCCGCAAGCGCCACCTCGAGCGCTCCCGCCACTACCTCGAC GGGGCCGAGCAGCGCCGCGTCGACGACGTCATCGCCCTGCTGGAGGACATGATCGAGCAGCAGGTCCTCCGCTCC GTCATGATGCAGATGGCCGGCGCCCAGCAGCAGCTGCTGCTGCAGGACAACGGCGGCGGCGGCGGCGGCGACGGA GGCGGTGGCGGCGGCGCTCAACTGGACGGCGGCTGTGATGGCGGTGGCGGTGGCGGTGGTGGTGGTGATGGCGGG GGAGGCGGAGGAGGCGGCGGTGACGGCGGCGGAGGAGGCGGAGGAGGCGGCGGCGGGGGAGGCGGAGGATGCTGA |
| Gene | >Hirsu2|105 ATGGCTACCAATGTCGACGGGCGGGCGACGAAGATTGCGCTCGGTGTTTTTGGCATCTTCACCTCCCTGATCGCT CTCGTGTCAATCGTCGTTCGCCAGTCGCGAAGGCGGGCCAGTCGGGCCCGGGCCAGGGCCGGGCCGAAGCCGGAG CCGGAGGTGGTCAAGCGGGACCTGAAGAAGTGGTACCGGGCGGCGCTGGACCAGATCGTGGCGGCGCGGGTGGAC AAGGAGACGAGCACGGAGCACGGCGAGCCCGTCTTCCTGTCGCACTACGCCAGCGGCGGCCACTTCCGGCACTGG GTCCTGCACACGCACGGGGCCAAGTACGAGCTGCGGCAGACGGGCGTCGACGGCGCCGGCCGCAAGCTGTACGCG GCCGCCGTCGGCCCGTCCGACTTCGACCTCGAGGCCTACCGCCGGTCGGTGACGGCCAACTACGCGCCCGAGCTG GGCCACTACTTCTACAGCATGATCGGCTGGACGGCCCTGACGCGGGCCCAGGTCGACGAGGCGTCGGCCCGCGCC GAAGCCGGCTTCGGCCCCTACGCCCTCCTCTCCAACAACTGCCACGACTTCCTGCAGCGGCTGGCCGAGCGCGTC GTCACCACCCGCGCCCCCGACTGGGCCTGGTTCCGCAGCGACAGCCTGCTCGACAGCTACTCCTACTCGCAGCGG CCGGCCCTCAACGACTGGGCCATCTACGCCGCCACCCGCAAGCGCCACCTCGAGCGCTCCCGCCACTACCTCGAC GGGGCCGAGCAGCGCCGCGTCGACGACGTCATCGCCCTGCTGGAGGACATGATCGAGCAGCAGGTCCTCCGCTCC GTCATGATGCAGATGGCCGGCGCCCAGCAGCAGCTGCTGCTGCAGGACAACGGCGGCGGCGGCGGCGGCGACGGA GGCGGTGGCGGCGGCGCTCAACTGGACGGCGGCTGTGATGGCGGTGGCGGTGGCGGTGGTGGTGGTGATGGCGGG GGAGGCGGAGGAGGCGGCGGTGACGGCGGCGGAGGAGGCGGAGGAGGCGGCGGCGGGGGAGGCGGAGGATGCTGA |