© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1044 |
| Gene name | |
| Location | Contig_1215:6560..7733 |
| Strand | + |
| Gene length (bp) | 1173 |
| Transcript length (bp) | 1173 |
| Coding sequence length (bp) | 1173 |
| Protein length (aa) | 391 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.7E-04 | 25 | 81 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | 0.637 | 0.6345 | 0.2107 | 0.0573 | 0.3595 | 0.0204 | 0.0641 | 0.1062 | 0.0696 | 0.0038 |
| Orthofinder run ID | 4 |
| Orthogroup | 5987 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1044 MPLHKIFADQPRSAPFLQGCSRRVLLTNLPPDVSAAQVLRAVHGYGGVVSASIVPDLGAPATGSRAAMVEFVYAA SAAQYVEYARHRPQSFRAADGSVHTAAVHLIPTLSYPHATGDHRLLQKNGTRALAFSNFPPAAIWYVLCLVGTRR VSNVQYNEQTGELTLEFESLFDANRALDTVERRLPLTLRRARCKTDSSQEWPSIVQDVHDHVPSTHIEQQWNRPP YNTHDYPRQEAPPPAAPERKPASPTPREKMAAQYDVSPSRLSSYIAERDAFEETEYRIIGSTIKLTRRGWGWSIS AEDDMKLLMANALHEPDLADEWDRHFAAHDSVNLRTWERYGLLARHRRERAAEQGLEEWRVPQCGAACEWGCCSI KAAPVPRAVAQYLAA* |
| Coding | >Hirsu2|1044 ATGCCGCTTCACAAGATATTCGCCGACCAGCCACGCTCAGCCCCTTTTTTGCAGGGTTGCAGTAGACGCGTCCTG TTGACCAATCTGCCGCCCGATGTCAGCGCCGCCCAAGTCCTGCGTGCCGTTCACGGCTACGGTGGCGTCGTTTCT GCCAGCATCGTGCCCGACTTGGGCGCCCCAGCCACCGGGTCTCGGGCGGCCATGGTCGAGTTCGTCTATGCCGCC TCAGCTGCGCAGTATGTCGAATATGCCCGGCATAGGCCCCAGTCGTTCCGTGCCGCCGACGGATCGGTGCATACG GCCGCTGTGCACCTGATCCCGACGCTCTCCTATCCCCATGCGACTGGTGACCACAGGCTCCTGCAGAAAAATGGT ACTCGAGCCCTCGCCTTCAGCAACTTCCCGCCCGCCGCCATCTGGTACGTTCTGTGCCTGGTCGGGACCCGCCGT GTCTCGAACGTCCAGTACAACGAGCAGACCGGGGAGCTCACCCTCGAGTTCGAATCGCTCTTCGACGCGAACCGG GCGCTGGACACAGTGGAGCGGCGCTTGCCGCTAACGTTGCGTCGAGCCCGCTGCAAGACGGACTCGTCTCAGGAG TGGCCGTCGATCGTTCAAGACGTCCATGACCACGTTCCGTCGACGCACATCGAGCAGCAGTGGAACCGCCCTCCG TACAACACACACGACTACCCCAGGCAGGAGGCGCCACCGCCGGCGGCTCCGGAGCGCAAGCCGGCAAGCCCGACG CCCAGGGAGAAGATGGCGGCGCAGTACGACGTCTCGCCGTCCCGGCTGTCTTCGTACATTGCCGAGCGCGATGCC TTCGAGGAGACGGAGTACCGCATCATCGGGAGCACCATCAAGCTGACGCGGCGCGGCTGGGGCTGGAGCATCAGC GCCGAGGACGACATGAAGCTGCTCATGGCCAACGCGCTGCACGAGCCGGACCTGGCCGACGAATGGGACCGCCAC TTCGCCGCACACGACTCGGTCAACCTGCGGACGTGGGAGCGGTACGGCTTGCTGGCCCGTCACCGGCGCGAGCGG GCCGCCGAGCAGGGCCTCGAGGAGTGGCGGGTGCCGCAGTGCGGAGCGGCGTGCGAGTGGGGATGCTGCAGCATC AAGGCGGCGCCCGTGCCGCGGGCCGTGGCGCAGTACCTGGCTGCTTGA |
| Transcript | >Hirsu2|1044 ATGCCGCTTCACAAGATATTCGCCGACCAGCCACGCTCAGCCCCTTTTTTGCAGGGTTGCAGTAGACGCGTCCTG TTGACCAATCTGCCGCCCGATGTCAGCGCCGCCCAAGTCCTGCGTGCCGTTCACGGCTACGGTGGCGTCGTTTCT GCCAGCATCGTGCCCGACTTGGGCGCCCCAGCCACCGGGTCTCGGGCGGCCATGGTCGAGTTCGTCTATGCCGCC TCAGCTGCGCAGTATGTCGAATATGCCCGGCATAGGCCCCAGTCGTTCCGTGCCGCCGACGGATCGGTGCATACG GCCGCTGTGCACCTGATCCCGACGCTCTCCTATCCCCATGCGACTGGTGACCACAGGCTCCTGCAGAAAAATGGT ACTCGAGCCCTCGCCTTCAGCAACTTCCCGCCCGCCGCCATCTGGTACGTTCTGTGCCTGGTCGGGACCCGCCGT GTCTCGAACGTCCAGTACAACGAGCAGACCGGGGAGCTCACCCTCGAGTTCGAATCGCTCTTCGACGCGAACCGG GCGCTGGACACAGTGGAGCGGCGCTTGCCGCTAACGTTGCGTCGAGCCCGCTGCAAGACGGACTCGTCTCAGGAG TGGCCGTCGATCGTTCAAGACGTCCATGACCACGTTCCGTCGACGCACATCGAGCAGCAGTGGAACCGCCCTCCG TACAACACACACGACTACCCCAGGCAGGAGGCGCCACCGCCGGCGGCTCCGGAGCGCAAGCCGGCAAGCCCGACG CCCAGGGAGAAGATGGCGGCGCAGTACGACGTCTCGCCGTCCCGGCTGTCTTCGTACATTGCCGAGCGCGATGCC TTCGAGGAGACGGAGTACCGCATCATCGGGAGCACCATCAAGCTGACGCGGCGCGGCTGGGGCTGGAGCATCAGC GCCGAGGACGACATGAAGCTGCTCATGGCCAACGCGCTGCACGAGCCGGACCTGGCCGACGAATGGGACCGCCAC TTCGCCGCACACGACTCGGTCAACCTGCGGACGTGGGAGCGGTACGGCTTGCTGGCCCGTCACCGGCGCGAGCGG GCCGCCGAGCAGGGCCTCGAGGAGTGGCGGGTGCCGCAGTGCGGAGCGGCGTGCGAGTGGGGATGCTGCAGCATC AAGGCGGCGCCCGTGCCGCGGGCCGTGGCGCAGTACCTGGCTGCTTGA |
| Gene | >Hirsu2|1044 ATGCCGCTTCACAAGATATTCGCCGACCAGCCACGCTCAGCCCCTTTTTTGCAGGGTTGCAGTAGACGCGTCCTG TTGACCAATCTGCCGCCCGATGTCAGCGCCGCCCAAGTCCTGCGTGCCGTTCACGGCTACGGTGGCGTCGTTTCT GCCAGCATCGTGCCCGACTTGGGCGCCCCAGCCACCGGGTCTCGGGCGGCCATGGTCGAGTTCGTCTATGCCGCC TCAGCTGCGCAGTATGTCGAATATGCCCGGCATAGGCCCCAGTCGTTCCGTGCCGCCGACGGATCGGTGCATACG GCCGCTGTGCACCTGATCCCGACGCTCTCCTATCCCCATGCGACTGGTGACCACAGGCTCCTGCAGAAAAATGGT ACTCGAGCCCTCGCCTTCAGCAACTTCCCGCCCGCCGCCATCTGGTACGTTCTGTGCCTGGTCGGGACCCGCCGT GTCTCGAACGTCCAGTACAACGAGCAGACCGGGGAGCTCACCCTCGAGTTCGAATCGCTCTTCGACGCGAACCGG GCGCTGGACACAGTGGAGCGGCGCTTGCCGCTAACGTTGCGTCGAGCCCGCTGCAAGACGGACTCGTCTCAGGAG TGGCCGTCGATCGTTCAAGACGTCCATGACCACGTTCCGTCGACGCACATCGAGCAGCAGTGGAACCGCCCTCCG TACAACACACACGACTACCCCAGGCAGGAGGCGCCACCGCCGGCGGCTCCGGAGCGCAAGCCGGCAAGCCCGACG CCCAGGGAGAAGATGGCGGCGCAGTACGACGTCTCGCCGTCCCGGCTGTCTTCGTACATTGCCGAGCGCGATGCC TTCGAGGAGACGGAGTACCGCATCATCGGGAGCACCATCAAGCTGACGCGGCGCGGCTGGGGCTGGAGCATCAGC GCCGAGGACGACATGAAGCTGCTCATGGCCAACGCGCTGCACGAGCCGGACCTGGCCGACGAATGGGACCGCCAC TTCGCCGCACACGACTCGGTCAACCTGCGGACGTGGGAGCGGTACGGCTTGCTGGCCCGTCACCGGCGCGAGCGG GCCGCCGAGCAGGGCCTCGAGGAGTGGCGGGTGCCGCAGTGCGGAGCGGCGTGCGAGTGGGGATGCTGCAGCATC AAGGCGGCGCCCGTGCCGCGGGCCGTGGCGCAGTACCTGGCTGCTTGA |