© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10432 |
| Gene name | |
| Location | Contig_842:455..1199 |
| Strand | + |
| Gene length (bp) | 744 |
| Transcript length (bp) | 558 |
| Coding sequence length (bp) | 558 |
| Protein length (aa) | 186 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12254 | DNA_pol_alpha_N | DNA polymerase alpha subunit p180 N terminal | 2.4E-25 | 10 | 75 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P28040|DPOA_SCHPO | DNA polymerase alpha catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol1 PE=1 SV=1 | 9 | 156 | 9.0E-22 |
| sp|Q27152|DPOLA_OXYTR | DNA polymerase alpha catalytic subunit OS=Oxytricha trifallax PE=3 SV=1 | 26 | 85 | 5.0E-07 |
| sp|O48653|DPOLA_ORYSJ | DNA polymerase alpha catalytic subunit OS=Oryza sativa subsp. japonica GN=Os01g0868300 PE=2 SV=2 | 8 | 97 | 5.0E-07 |
| sp|Q94636|DPOLA_STENO | DNA polymerase alpha catalytic subunit OS=Sterkiella nova PE=3 SV=1 | 28 | 76 | 5.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10432 MSKANHRAKLAELRALRQSGKKAFDHYRVDDVQNLYDEVDEDGYKEIVRTRLNQDDFVVDDHGEGYADDGREEWD RVRQDDSDSDDKELPVRGRPRKAVKESCQKEQARRAVNDRNISEYFTKGPAKSQPKPKVAKTKADGDFMADLLSE VDYNIPASAITTRQPEAEKAGHASIPDLPPRWHPA* |
| Coding | >Hirsu2|10432 ATGTCAAAGGCCAACCACAGGGCCAAGCTCGCCGAGCTTCGAGCTCTTCGCCAATCGGGCAAGAAAGCCTTCGAT CACTATCGCGTTGACGATGTACAAAACCTTTATGATGAGGTTGACGAGGATGGCTACAAGGAAATTGTTCGGACG CGGCTCAATCAGGATGATTTCGTAGTCGACGACCATGGCGAGGGTTACGCCGACGACGGTCGCGAGGAATGGGAC CGTGTCCGACAAGATGATTCAGACAGCGATGATAAAGAACTGCCTGTACGAGGTAGGCCCAGAAAAGCCGTCAAG GAGAGCTGTCAGAAGGAACAGGCCAGGCGTGCAGTCAACGATCGCAACATCAGCGAGTATTTCACCAAAGGGCCA GCCAAAAGCCAACCCAAGCCCAAGGTAGCTAAAACCAAGGCAGACGGCGACTTTATGGCCGACCTTCTCTCCGAG GTCGACTACAACATCCCCGCCTCGGCCATTACCACGAGGCAGCCCGAAGCGGAGAAAGCTGGACACGCCTCGATA CCCGACCTTCCCCCCCGGTGGCACCCTGCATAG |
| Transcript | >Hirsu2|10432 ATGTCAAAGGCCAACCACAGGGCCAAGCTCGCCGAGCTTCGAGCTCTTCGCCAATCGGGCAAGAAAGCCTTCGAT CACTATCGCGTTGACGATGTACAAAACCTTTATGATGAGGTTGACGAGGATGGCTACAAGGAAATTGTTCGGACG CGGCTCAATCAGGATGATTTCGTAGTCGACGACCATGGCGAGGGTTACGCCGACGACGGTCGCGAGGAATGGGAC CGTGTCCGACAAGATGATTCAGACAGCGATGATAAAGAACTGCCTGTACGAGGTAGGCCCAGAAAAGCCGTCAAG GAGAGCTGTCAGAAGGAACAGGCCAGGCGTGCAGTCAACGATCGCAACATCAGCGAGTATTTCACCAAAGGGCCA GCCAAAAGCCAACCCAAGCCCAAGGTAGCTAAAACCAAGGCAGACGGCGACTTTATGGCCGACCTTCTCTCCGAG GTCGACTACAACATCCCCGCCTCGGCCATTACCACGAGGCAGCCCGAAGCGGAGAAAGCTGGACACGCCTCGATA CCCGACCTTCCCCCCCGGTGGCACCCTGCATAG |
| Gene | >Hirsu2|10432 ATGTCAAAGGCCAACCACAGGGCCAAGCTCGCCGAGCTTCGAGCTCTTCGCCAATCGGGCAAGAAAGCCTTCGAT CACTATCGCGTTGACGATGTACAAAACCTTTATGATGAGGTTGACGAGGATGGCTACAAGGAAATTGTTCGGACG CGGCTCAATCAGGATGATTTCGTAGTCGACGACCATGGCGAGGGTTACGCCGACGACGGTCGCGAGGAATGGGAC CGTGTCCGACAAGATGATTCAGACAGCGATGATAAAGAACTGCCTGTACGAGGTAGGCCCAGAAAAGCCGGTATG TTCTCAGTCGTACTTAGGCGGCCAACCATGCCCTATCATCTTCTCACGCCTCATGATTTAGTCAAGGAGAGCTGT CAGAAGGAACAGGCCAGGCGTGCAGTCAACGATCGCAACATCAGCGAGTATTTCACCAAAGGGCCAGCCAAAAGC CAACCCAAGCCCAAGGTGAGCCGTGAAATTCCCTTTCACTCGTCCCTCTCCCCTCGACACGCTGACATTCAGACT AGGTAGCTAAAACCAAGGCAGACGGCGACTTTATGGCCGACCTTCTCTCCGAGGTCGACTACAACATCCCCGCCT CGGCCATTACCACGAGGCAGCCCGAAGCGGAGAAAGCTGGACAGTCGCGCAGACCAAGGGTCCTGTCGCCCACCC CGGAACCGACGTTGAAGAGACAAAAGCGCCTCGATACCCGACCTTCCCCCCCGGTGGCACCCTGCATAG |