Protein ID | Hirsu2|104 |
Gene name | |
Location | Contig_1014:5148..6525 |
Strand | - |
Gene length (bp) | 1377 |
Transcript length (bp) | 1098 |
Coding sequence length (bp) | 1098 |
Protein length (aa) | 366 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF07986 | TBCC | Tubulin binding cofactor C | 2.7E-29 | 201 | 316 |
PF16752 | TBCC_N | Tubulin-specific chaperone C N-terminal domain | 3.6E-08 | 5 | 89 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q3SZE9|TBCC_BOVIN | Tubulin-specific chaperone C OS=Bos taurus GN=TBCC PE=2 SV=1 | 32 | 334 | 2.0E-20 |
sp|Q9SMR2|TBCC_ARATH | Tubulin-folding cofactor C OS=Arabidopsis thaliana GN=TFCC PE=1 SV=1 | 177 | 334 | 4.0E-18 |
sp|Q15814|TBCC_HUMAN | Tubulin-specific chaperone C OS=Homo sapiens GN=TBCC PE=1 SV=2 | 204 | 334 | 4.0E-17 |
sp|Q5R5J7|TBCC_PONAB | Tubulin-specific chaperone C OS=Pongo abelii GN=TBCC PE=2 SV=1 | 204 | 334 | 7.0E-17 |
sp|Q8VCN9|TBCC_MOUSE | Tubulin-specific chaperone C OS=Mus musculus GN=Tbcc PE=1 SV=1 | 204 | 334 | 4.0E-16 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q3SZE9|TBCC_BOVIN | Tubulin-specific chaperone C OS=Bos taurus GN=TBCC PE=2 SV=1 | 32 | 334 | 2.0E-20 |
sp|Q9SMR2|TBCC_ARATH | Tubulin-folding cofactor C OS=Arabidopsis thaliana GN=TFCC PE=1 SV=1 | 177 | 334 | 4.0E-18 |
sp|Q15814|TBCC_HUMAN | Tubulin-specific chaperone C OS=Homo sapiens GN=TBCC PE=1 SV=2 | 204 | 334 | 4.0E-17 |
sp|Q5R5J7|TBCC_PONAB | Tubulin-specific chaperone C OS=Pongo abelii GN=TBCC PE=2 SV=1 | 204 | 334 | 7.0E-17 |
sp|Q8VCN9|TBCC_MOUSE | Tubulin-specific chaperone C OS=Mus musculus GN=Tbcc PE=1 SV=1 | 204 | 334 | 4.0E-16 |
sp|Q8AVX5|XRP2_XENLA | Protein XRP2 OS=Xenopus laevis GN=rp2 PE=2 SV=3 | 225 | 330 | 3.0E-08 |
sp|Q5ZHN4|XRP2_CHICK | Protein XRP2 OS=Gallus gallus GN=RP2 PE=2 SV=3 | 228 | 340 | 5.0E-08 |
sp|Q9EPK2|XRP2_MOUSE | Protein XRP2 OS=Mus musculus GN=Rp2 PE=1 SV=3 | 225 | 340 | 3.0E-07 |
GO Term | Description | Terminal node |
---|---|---|
GO:0015631 | tubulin binding | Yes |
GO:0008092 | cytoskeletal protein binding | No |
GO:0005515 | protein binding | No |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | Peroxisomal targeting signal | 0.7623 | 0.4144 | 0.038 | 0.0553 | 0.0618 | 0.0496 | 0.1769 | 0.0678 | 0.0353 | 0.3747 |
Orthofinder run ID | 4 |
Orthogroup | 5986 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|104 MDPPQRFYRHFQDSVAVLQDQIAQLESVSAVAGERQEAVDHVLAAIAKLQNDVADAADRTPSYDRRQYAETIKGL HDKLHETVARVTPKSRFQFRRSLADDAHVDMGAPENDPRLHPGSLSRKPYGSPRSAPPREPAAESDDVLADLPAT SRAKDYNKELSQPAASAIRKPSFSTANSIGISDQAGLHIILPSSAARATASGSLTNLRDCIVDMSVPTAHGRPFA GLALRSINDSLIVAGRVAGPVHITNVSDSILVVIARQVRIHQCKNVDVYLHCTSHPIIEDCTAMRFAPLPECYAS EAESATENQWDQVDDFKWLKAGHSPNWTTLSEAQMLDDDIWTKTVPGLPGASVEETLRKVGLPRR* |
Coding | >Hirsu2|104 ATGGATCCCCCGCAGCGCTTCTACCGGCACTTCCAGGACAGCGTTGCCGTGCTCCAGGACCAGATCGCCCAGCTC GAGTCCGTCTCGGCCGTCGCCGGCGAGCGCCAGGAGGCCGTCGACCACGTGCTGGCCGCCATCGCCAAGCTCCAG AATGACGTCGCCGATGCCGCCGACCGCACGCCCTCCTACGATAGGAGGCAGTACGCCGAGACCATCAAGGGCCTC CACGACAAGCTGCACGAGACGGTCGCCCGCGTCACGCCCAAGTCTCGCTTCCAGTTCCGCCGCTCCCTCGCCGAC GACGCCCACGTCGACATGGGCGCCCCCGAAAACGACCCGCGCCTGCACCCCGGCAGCCTGTCGAGGAAGCCGTAC GGCAGCCCCCGTTCCGCGCCGCCCCGCGAGCCCGCCGCCGAGAGCGACGACGTCCTGGCCGACCTGCCCGCCACC TCGCGCGCCAAGGACTACAACAAGGAGCTCTCCCAGCCGGCCGCCTCGGCCATCCGCAAGCCCAGCTTCTCCACC GCCAATAGCATCGGCATCTCGGACCAGGCCGGCCTGCACATCATCCTGCCCTCGTCGGCCGCCCGCGCCACCGCC TCGGGGAGCCTGACGAACCTGCGCGACTGCATCGTCGACATGTCCGTCCCCACCGCCCACGGGAGGCCCTTCGCC GGCCTCGCGCTCCGCAGCATCAACGACAGCCTCATCGTCGCCGGCCGCGTCGCCGGGCCCGTCCACATCACCAAC GTATCCGACAGCATCCTCGTCGTCATCGCCCGCCAGGTCCGCATCCACCAATGCAAAAACGTCGACGTCTACCTG CACTGCACCAGCCACCCCATCATCGAAGACTGCACCGCCATGCGCTTCGCCCCGCTTCCCGAGTGCTATGCAAGC GAGGCCGAATCCGCGACGGAGAACCAATGGGACCAGGTCGACGACTTCAAATGGCTCAAGGCTGGCCACAGCCCC AACTGGACCACGCTGTCCGAGGCCCAGATGCTCGACGACGACATCTGGACCAAGACCGTCCCGGGCCTGCCAGGC GCCAGCGTGGAGGAGACTCTGAGAAAGGTCGGGCTGCCGCGACGGTGA |
Transcript | >Hirsu2|104 ATGGATCCCCCGCAGCGCTTCTACCGGCACTTCCAGGACAGCGTTGCCGTGCTCCAGGACCAGATCGCCCAGCTC GAGTCCGTCTCGGCCGTCGCCGGCGAGCGCCAGGAGGCCGTCGACCACGTGCTGGCCGCCATCGCCAAGCTCCAG AATGACGTCGCCGATGCCGCCGACCGCACGCCCTCCTACGATAGGAGGCAGTACGCCGAGACCATCAAGGGCCTC CACGACAAGCTGCACGAGACGGTCGCCCGCGTCACGCCCAAGTCTCGCTTCCAGTTCCGCCGCTCCCTCGCCGAC GACGCCCACGTCGACATGGGCGCCCCCGAAAACGACCCGCGCCTGCACCCCGGCAGCCTGTCGAGGAAGCCGTAC GGCAGCCCCCGTTCCGCGCCGCCCCGCGAGCCCGCCGCCGAGAGCGACGACGTCCTGGCCGACCTGCCCGCCACC TCGCGCGCCAAGGACTACAACAAGGAGCTCTCCCAGCCGGCCGCCTCGGCCATCCGCAAGCCCAGCTTCTCCACC GCCAATAGCATCGGCATCTCGGACCAGGCCGGCCTGCACATCATCCTGCCCTCGTCGGCCGCCCGCGCCACCGCC TCGGGGAGCCTGACGAACCTGCGCGACTGCATCGTCGACATGTCCGTCCCCACCGCCCACGGGAGGCCCTTCGCC GGCCTCGCGCTCCGCAGCATCAACGACAGCCTCATCGTCGCCGGCCGCGTCGCCGGGCCCGTCCACATCACCAAC GTATCCGACAGCATCCTCGTCGTCATCGCCCGCCAGGTCCGCATCCACCAATGCAAAAACGTCGACGTCTACCTG CACTGCACCAGCCACCCCATCATCGAAGACTGCACCGCCATGCGCTTCGCCCCGCTTCCCGAGTGCTATGCAAGC GAGGCCGAATCCGCGACGGAGAACCAATGGGACCAGGTCGACGACTTCAAATGGCTCAAGGCTGGCCACAGCCCC AACTGGACCACGCTGTCCGAGGCCCAGATGCTCGACGACGACATCTGGACCAAGACCGTCCCGGGCCTGCCAGGC GCCAGCGTGGAGGAGACTCTGAGAAAGGTCGGGCTGCCGCGACGGTGA |
Gene | >Hirsu2|104 ATGGATCCCCCGCAGCGCTTCTACCGGCACTTCCAGGACAGCGTTGCCGGTGTGCTCCTCCTCGTCTCCCCTGCC CGTCGGTGCGGCGGCTAACGCGACGGCCGCCTCGCCCTTTGGTGCTCGCGCAGTGCTCCAGGACCAGATCGCCCA GCTCGAGTCCGTCTCGGCCGTCGCCGGCGAGCGCCAGGAGGCCGTCGACCACGTGCTGGCCGCCATCGCCAAGCT CCAGAATGACGTCGCCGATGCCGCCGACCGCACGCCCTCCTACGATAGGAGGCAGTACGCCGAGGTCTGTCTGCG CGACAAACAACGCCCGAGCCTCGTCTCCCCCCCATCGGACGGGGCCCCGGCGCGGTGACGAGCCTCTCCCGAGTC CATGTATTGATGATGCCTCTCCCTCGCGCAGACCATCAAGGGCCTCCACGACAAGCTGCACGAGACGGTCGCCCG CGTCACGCCCAAGTCTCGCTTCCAGTTCCGCCGCTCCCTCGCCGACGACGCCCACGTCGACATGGGCGCCCCCGA AAACGACCCGCGCCTGCACCCCGGCAGCCTGTCGAGGAAGCCGTACGGCAGCCCCCGTTCCGCGCCGCCCCGCGA GCCCGCCGCCGAGAGCGACGACGTCCTGGCCGACCTGCCCGCCACCTCGCGCGCCAAGGACTACAACAAGGAGCT CTCCCAGCCGGCCGCCTCGGCCATCCGCAAGCCCAGCTTCTCCACCGCCAATAGCATCGGCATCTCGGACCAGGC CGGCCTGCACATCATCCTGCCCTCGTCGGCCGCCCGCGCCACCGCCTCGGGGAGCCTGACGAACCTGCGCGACTG CATCGTCGACATGTCCGTCCCCACCGCCCACGGGAGGCCCTTCGCCGGCCTCGCGCTCCGCAGCATCAACGACAG CCTCATCGTCGCCGGCCGCGTCGCCGGGCCCGTCCACATCACCAACGTATCCGACAGCATCCTCGTCGTCATCGC CCGCCAGGTCCGCATCCACCAATGCAAAAACGTCGACGTCTACCTGCACTGCACCAGCCACCCCATCATCGAAGA CTGCACCGCCATGCGCTTCGCCCCGCTTCCCGAGTGCTATGTGAGTGCCCCATGCCCGACCCGTCCCGCGCGATG CCGGCTGCTTCGGCTCCGACCGACTCGCCGACTGAACCACGACAACAGGCAAGCGAGGCCGAATCCGCGACGGAG AACCAATGGGACCAGGTCGACGACTTCAAATGGCTCAAGGCTGGCCACAGCCCCAACTGGACCACGCTGTCCGAG GCCCAGATGCTCGACGACGACATCTGGACCAAGACCGTCCCGGGCCTGCCAGGCGCCAGCGTGGAGGAGACTCTG AGAAAGGTCGGGCTGCCGCGACGGTGA |