Protein ID | Hirsu2|1036 |
Gene name | |
Location | Contig_1213:4678..5644 |
Strand | - |
Gene length (bp) | 966 |
Transcript length (bp) | 822 |
Coding sequence length (bp) | 822 |
Protein length (aa) | 274 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular|Endoplasmic reticulum | Signal peptide | 0.0675 | 0.0647 | 0.679 | 0.1097 | 0.3295 | 0.0493 | 0.6965 | 0.1273 | 0.2637 | 0.012 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 18 | 0.999365 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 213 | 235 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 1205 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1036 MRIFASAVVAALPLLASAQEDPFAQYKAQLQTFMNRVVSSIPNPGFHDPVAALEAKVGSMRLSTLTLENWKETLY EPVKSGATTPEEWWVLITGRNKTCYGHCGKVEQAFNETAAKFALLPGTPHMGYLNCDDQPILCNSWAASTANIWS FSMLPAPAPVEVLKRKLNLTTTTSSDLVELYSSKGAGDWTPLESWFHPFHGKATELGLSIPYAYTIWAFNLVPNW LFMVIVSFASRSMMSNRMNNMANQGRRPNGGPRAGAGAGAGAGAAAGR* |
Coding | >Hirsu2|1036 ATGCGCATCTTCGCCTCTGCCGTCGTCGCGGCTCTGCCGCTGCTCGCGTCCGCTCAGGAGGACCCCTTCGCCCAG TACAAGGCGCAACTGCAGACCTTCATGAACCGGGTCGTCTCGTCCATCCCGAACCCCGGCTTCCATGACCCCGTC GCCGCCCTCGAGGCCAAGGTGGGCTCCATGCGGCTATCGACCCTAACGCTCGAGAACTGGAAGGAGACGCTATAC GAGCCGGTCAAGTCCGGGGCCACGACGCCGGAGGAGTGGTGGGTTCTCATCACCGGGAGGAACAAGACGTGCTAC GGCCATTGCGGCAAGGTCGAGCAGGCCTTCAACGAGACGGCGGCCAAGTTCGCCCTCCTCCCCGGAACGCCTCAC ATGGGTTACCTCAACTGCGATGACCAGCCCATTCTCTGCAACAGCTGGGCTGCCAGCACCGCCAACATCTGGTCC TTCTCCATGCTCCCTGCCCCGGCCCCCGTCGAGGTTCTGAAGCGAAAGCTCAACCTCACGACGACGACCTCGTCC GATCTCGTCGAGCTGTACAGCAGTAAGGGCGCAGGGGACTGGACACCTCTCGAGTCTTGGTTCCATCCCTTCCAC GGAAAGGCCACCGAGCTCGGCCTCTCTATTCCCTACGCATACACCATCTGGGCCTTCAACCTCGTTCCCAACTGG TTGTTCATGGTCATCGTCTCCTTTGCCAGCCGAAGCATGATGTCCAACCGCATGAACAACATGGCGAACCAAGGA CGACGCCCTAATGGCGGACCAAGAGCTGGAGCCGGGGCCGGGGCCGGAGCCGGGGCTGCCGCTGGTCGCTGA |
Transcript | >Hirsu2|1036 ATGCGCATCTTCGCCTCTGCCGTCGTCGCGGCTCTGCCGCTGCTCGCGTCCGCTCAGGAGGACCCCTTCGCCCAG TACAAGGCGCAACTGCAGACCTTCATGAACCGGGTCGTCTCGTCCATCCCGAACCCCGGCTTCCATGACCCCGTC GCCGCCCTCGAGGCCAAGGTGGGCTCCATGCGGCTATCGACCCTAACGCTCGAGAACTGGAAGGAGACGCTATAC GAGCCGGTCAAGTCCGGGGCCACGACGCCGGAGGAGTGGTGGGTTCTCATCACCGGGAGGAACAAGACGTGCTAC GGCCATTGCGGCAAGGTCGAGCAGGCCTTCAACGAGACGGCGGCCAAGTTCGCCCTCCTCCCCGGAACGCCTCAC ATGGGTTACCTCAACTGCGATGACCAGCCCATTCTCTGCAACAGCTGGGCTGCCAGCACCGCCAACATCTGGTCC TTCTCCATGCTCCCTGCCCCGGCCCCCGTCGAGGTTCTGAAGCGAAAGCTCAACCTCACGACGACGACCTCGTCC GATCTCGTCGAGCTGTACAGCAGTAAGGGCGCAGGGGACTGGACACCTCTCGAGTCTTGGTTCCATCCCTTCCAC GGAAAGGCCACCGAGCTCGGCCTCTCTATTCCCTACGCATACACCATCTGGGCCTTCAACCTCGTTCCCAACTGG TTGTTCATGGTCATCGTCTCCTTTGCCAGCCGAAGCATGATGTCCAACCGCATGAACAACATGGCGAACCAAGGA CGACGCCCTAATGGCGGACCAAGAGCTGGAGCCGGGGCCGGGGCCGGAGCCGGGGCTGCCGCTGGTCGCTGA |
Gene | >Hirsu2|1036 ATGCGCATCTTCGCCTCTGCCGTCGTCGCGGCTCTGCCGCTGCTCGCGTCCGCTCAGGAGGACCCCTTCGCCCAG TACAAGGCGCAACTGCAGACCTTCATGAACCGGGTCGTCTCGTCCATCCCGAACCCCGGCTTCCATGACCCCGTC GCCGCCCTCGAGGCCAAGGTGGGCTCCATGCGGCTATCGACCCTAACGCTCGAGAACTGGAAGGAGACGCTATAC GAGCCGGTCAAGTCCGGGGCCACGACGCCGGAGGAGTGGTGGGTTCTCATCACCGGGAGGAACAAGACGTGCTAC GGTAAGCTCGCCAGTCTTTGTTGATGACCCGGCGCGTGGTGTGCAGAGAGAGCTGACGCGTGTCGCGCAACCGGC AGGCCATTGCGGCAAGGTCGAGCAGGCCTTCAACGAGACGGCGGCCAAGTTCGCCCTCCTCCCCGGAACGCCTCA CATGGGTTACCTCAACTGCGATGACCAGCCCATTCTCTGCAACAGCTGGGCTGCCAGCACCGCCAACATCTGGTC CTTCTCCATGCTCCCTGCCCCGGCCCCCGTCGAGGTTCTGAAGCGAAAGCTCAACCTCACGACGACGACCTCGTC CGATCTCGTCGAGCTGTACAGCAGTAAGGGCGCAGGGGACTGGACACCTCTCGAGTCTTGGTTCCATCCCTTCCA CGGAAAGGCCACCGAGCTCGGCCTCTCTATTCCCTACGCATACACCATCTGGGCCTTCAACCTCGTTCCCAACTG GTTGTTCATGGTCATCGTCTCCTTTGCCAGCCGAAGCATGATGTGGGTCCCCCTCCTTGGTGCATTGCATCTCCT CCCTGGCAATGCCCTTCGCTGACGCTCCTCATCAGGTCCAACCGCATGAACAACATGGCGAACCAAGGACGACGC CCTAATGGCGGACCAAGAGCTGGAGCCGGGGCCGGGGCCGGAGCCGGGGCTGCCGCTGGTCGCTGA |