© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|10359 |
| Gene name | |
| Location | Contig_83:12980..14458 |
| Strand | + |
| Gene length (bp) | 1478 |
| Transcript length (bp) | 1128 |
| Coding sequence length (bp) | 1128 |
| Protein length (aa) | 376 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 6.7E-10 | 109 | 279 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 3.9E-06 | 136 | 276 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94343|YHMA_SCHPO | Uncharacterized MFS-type transporter C1271.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1271.10c PE=1 SV=1 | 74 | 289 | 5.0E-18 |
| sp|P53389|HOL1_YEAST | Protein HOL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HOL1 PE=1 SV=1 | 58 | 286 | 4.0E-12 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 106 | 128 | 22 |
| 2 | 138 | 160 | 22 |
| 3 | 167 | 189 | 22 |
| 4 | 199 | 216 | 17 |
| 5 | 229 | 251 | 22 |
| 6 | 256 | 278 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10359 MAGDIVNDKPVAIAQPPLAHPHEPSLRSLASTDTYRPTTAASWPPPVMASPRSPSFASSSLFSQPKCIKYGSGRH ADVELIPQPSDDPDDPLNWPRWRKDLNLASLLATVGLVGAMKTAFVTTGGVMASRYGVEYTTVAALTSVPILLSV LAGLGSSVAAKLWGKRPLYLASAVPLLVGSVWAAAAAADSYAACMAARVLQGLGWGAFDVLVLGSIQDTYFEHER DLPVSLYNIFTIATTWGSPLVGGLASSSGGSFAAQFRVVSALHIVSLPLLVLGAPETAFDRTMAGGLVPPPLFSV GKTVSDVGGGRASPWLSSSSSSSSSSSTGTSCTSSVCSTVVQPIGQVDHLRRAHPLAVLEFFFPALLFSLLSMQR * |
| Coding | >Hirsu2|10359 ATGGCCGGGGACATCGTCAACGACAAGCCCGTGGCCATCGCCCAGCCCCCGCTGGCTCACCCGCACGAGCCGTCG CTGAGATCGCTGGCTTCCACCGACACCTACCGCCCGACGACGGCGGCGTCATGGCCGCCTCCCGTCATGGCCTCC CCCCGGAGCCCGTCCTTCGCCTCCTCCTCCCTGTTCAGCCAGCCCAAGTGCATCAAGTACGGCAGCGGCAGGCAC GCCGACGTCGAGCTGATACCGCAGCCGAGCGACGACCCGGATGATCCCCTGAACTGGCCGCGGTGGCGCAAGGAC CTGAACCTGGCCTCTCTCCTCGCCACCGTCGGCCTGGTGGGCGCCATGAAGACGGCCTTTGTGACGACGGGCGGC GTCATGGCCAGCCGGTACGGCGTCGAGTACACGACCGTGGCCGCCCTCACCTCGGTCCCCATCCTGCTGTCCGTC CTGGCCGGCCTCGGCAGCTCCGTCGCCGCCAAGCTCTGGGGCAAGCGCCCGCTGTACCTGGCGTCGGCCGTGCCG CTGCTCGTCGGCTCCGTCTGGGCCGCCGCCGCCGCCGCCGACAGCTACGCCGCCTGCATGGCCGCCCGCGTCCTC CAGGGCCTGGGCTGGGGCGCCTTCGACGTCTTGGTCTTGGGGTCTATCCAAGACACGTACTTTGAGCACGAGCGC GACCTGCCCGTATCGCTGTACAACATCTTCACCATCGCCACGACGTGGGGGTCCCCCCTGGTCGGCGGGCTGGCC TCGAGCAGCGGCGGCTCGTTCGCGGCGCAGTTCCGCGTCGTCAGCGCGCTGCACATCGTCTCGCTGCCGCTGCTG GTGCTGGGCGCGCCCGAGACGGCCTTCGACCGGACCATGGCCGGCGGGCTCGTGCCGCCGCCGCTGTTTAGCGTG GGCAAGACGGTCTCGGACGTCGGCGGCGGCCGCGCGTCGCCGTGGTTATCGTCGTCGTCGTCGTCGTCGTCGTCG TCGTCCACCGGCACCTCGTGCACCTCCTCCGTGTGCAGCACCGTCGTCCAGCCGATCGGGCAGGTGGATCATCTG CGACGGGCCCATCCTCTGGCCGTCCTGGAATTCTTCTTCCCGGCCCTGCTCTTCTCTCTCTTGTCGATGCAGCGG TGA |
| Transcript | >Hirsu2|10359 ATGGCCGGGGACATCGTCAACGACAAGCCCGTGGCCATCGCCCAGCCCCCGCTGGCTCACCCGCACGAGCCGTCG CTGAGATCGCTGGCTTCCACCGACACCTACCGCCCGACGACGGCGGCGTCATGGCCGCCTCCCGTCATGGCCTCC CCCCGGAGCCCGTCCTTCGCCTCCTCCTCCCTGTTCAGCCAGCCCAAGTGCATCAAGTACGGCAGCGGCAGGCAC GCCGACGTCGAGCTGATACCGCAGCCGAGCGACGACCCGGATGATCCCCTGAACTGGCCGCGGTGGCGCAAGGAC CTGAACCTGGCCTCTCTCCTCGCCACCGTCGGCCTGGTGGGCGCCATGAAGACGGCCTTTGTGACGACGGGCGGC GTCATGGCCAGCCGGTACGGCGTCGAGTACACGACCGTGGCCGCCCTCACCTCGGTCCCCATCCTGCTGTCCGTC CTGGCCGGCCTCGGCAGCTCCGTCGCCGCCAAGCTCTGGGGCAAGCGCCCGCTGTACCTGGCGTCGGCCGTGCCG CTGCTCGTCGGCTCCGTCTGGGCCGCCGCCGCCGCCGCCGACAGCTACGCCGCCTGCATGGCCGCCCGCGTCCTC CAGGGCCTGGGCTGGGGCGCCTTCGACGTCTTGGTCTTGGGGTCTATCCAAGACACGTACTTTGAGCACGAGCGC GACCTGCCCGTATCGCTGTACAACATCTTCACCATCGCCACGACGTGGGGGTCCCCCCTGGTCGGCGGGCTGGCC TCGAGCAGCGGCGGCTCGTTCGCGGCGCAGTTCCGCGTCGTCAGCGCGCTGCACATCGTCTCGCTGCCGCTGCTG GTGCTGGGCGCGCCCGAGACGGCCTTCGACCGGACCATGGCCGGCGGGCTCGTGCCGCCGCCGCTGTTTAGCGTG GGCAAGACGGTCTCGGACGTCGGCGGCGGCCGCGCGTCGCCGTGGTTATCGTCGTCGTCGTCGTCGTCGTCGTCG TCGTCCACCGGCACCTCGTGCACCTCCTCCGTGTGCAGCACCGTCGTCCAGCCGATCGGGCAGGTGGATCATCTG CGACGGGCCCATCCTCTGGCCGTCCTGGAATTCTTCTTCCCGGCCCTGCTCTTCTCTCTCTTGTCGATGCAGCGG TGA |
| Gene | >Hirsu2|10359 ATGGCCGGGGACATCGTCAACGACAAGCCCGTGGCCATCGCCCAGCCCCCGCTGGCTCACCCGCACGAGCCGTCG CTGAGATCGCTGGCTTCCACCGACACCTACCGCCCGACGACGGCGGCGTCATGGCCGCCTCCCGTCATGGCCTCC CCCCGGAGCCCGTCCTTCGCCTCCTCCTCCCTGTTCAGCCAGCCCAAGTGCATCAAGTACGGCAGCGGCAGGCAC GCCGACGTCGAGCTGATACCGCAGCCGAGCGACGACCCGGATGATCCCCTGGTGCGTCCCCGCTCCCAAGCTGTC CTGTCGTCCCTCCCGGTCTTGGACGGTGGAAAGACGGCAGCGGAGAAGGAATAAGAACGAGGAGGAGCTTACGCT TTTTTTTTTCTTCCGCGAGCAGAACTGGCCGCGGTGGCGCAAGGACCTGAACCTGGCCTCTCTCCTCGCCACCGT CGGCCTGGTGGGCGCCATGAAGACGGCCTTTGTGACGACGGGCGGCGTCATGGCCAGCCGGTACGGCGTCGAGTA CACGACCGTGGCCGCCCTCACCTCGGTCCCCATCCTGCTGTCCGTCCTGGCCGGCCTCGGCAGCTCCGTCGCCGC CAAGCTCTGGGGCAAGCGCCCGCTGTACCTGGCGTCGGCCGTGCCGCTGCTCGTCGGCTCCGTCTGGGCCGCCGC CGCCGCCGCCGACAGCTACGCCGCCTGCATGGCCGCCCGCGTCCTCCAGGGCCTGGGCTGGGGCGCCTTCGACGT CTTGGTCTTGGGGTCTATCCAAGACACGTACTTTGTGAGTCTCTCTCTCGAAAAGTTCCCGTTTCTATTCTCTCT CTCCCCCCCTCTCTTGTGTGCGCGAGCCTCTGCCTGAGCGCCCGGCGGCAAATGCAACAGGACTGACGACGGAGA GGGGGGAAAACGGTGGCGGCGCCATAGGAGCACGAGCGCGACCTGCCCGTATCGCTGTACAACATCTTCACCATC GCCACGACGTGGGGGTCCCCCCTGGTCGGCGGGCTGGCCTCGAGCAGCGGCGGCTCGTTCGCGGCGCAGTTCCGC GTCGTCAGCGCGCTGCACATCGTCTCGCTGCCGCTGCTGGTGCTGGGCGCGCCCGAGACGGCCTTCGACCGGACC ATGGCCGGCGGGCTCGTGCCGCCGCCGCTGTTTAGCGTGGGCAAGACGGTCTCGGACGTCGGCGGCGGCCGCGCG TCGCCGTGGTTATCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCCACCGGCACCTCGTGCACCTCCTCCGTGTGC AGCACCGTCGTCCAGCCGATCGGGTACGGGTGCTTGTCCGTGTTGAGCTCGTGGCTGCGGAAGCTGAGGCCGGCG AAGACGGGCTTGACGATGAAGGTCTGCCCGTCAGGCAGGTGGATCATCTGCGACGGGCCCATCCTCTGGCCGTCC TGGAATTCTTCTTCCCGGCCCTGCTCTTCTCTCTCTTGTCGATGCAGCGGTGA |