© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10352 |
| Gene name | |
| Location | Contig_83:27..1606 |
| Strand | + |
| Gene length (bp) | 1579 |
| Transcript length (bp) | 1197 |
| Coding sequence length (bp) | 1197 |
| Protein length (aa) | 399 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01545 | Cation_efflux | Cation efflux family | 1.1E-23 | 93 | 278 |
| PF16916 | ZT_dimer | Dimerisation domain of Zinc Transporter | 2.0E-08 | 295 | 362 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9SAJ7|MTP9_ARATH | Metal tolerance protein 9 OS=Arabidopsis thaliana GN=MTP9 PE=2 SV=2 | 37 | 374 | 3.0E-64 |
| sp|Q10PP8|MTP4_ORYSJ | Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1 | 26 | 383 | 4.0E-64 |
| sp|Q9LDU0|MTP7_ORYSJ | Metal tolerance protein 7 OS=Oryza sativa subsp. japonica GN=MTP7 PE=2 SV=1 | 46 | 374 | 3.0E-63 |
| sp|Q0WU02|MTP10_ARATH | Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1 | 44 | 374 | 4.0E-62 |
| sp|Q6Z7K5|MTP3_ORYSJ | Metal tolerance protein 3 OS=Oryza sativa subsp. japonica GN=MTP3 PE=2 SV=1 | 64 | 374 | 2.0E-60 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9SAJ7|MTP9_ARATH | Metal tolerance protein 9 OS=Arabidopsis thaliana GN=MTP9 PE=2 SV=2 | 37 | 374 | 3.0E-64 |
| sp|Q10PP8|MTP4_ORYSJ | Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1 | 26 | 383 | 4.0E-64 |
| sp|Q9LDU0|MTP7_ORYSJ | Metal tolerance protein 7 OS=Oryza sativa subsp. japonica GN=MTP7 PE=2 SV=1 | 46 | 374 | 3.0E-63 |
| sp|Q0WU02|MTP10_ARATH | Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1 | 44 | 374 | 4.0E-62 |
| sp|Q6Z7K5|MTP3_ORYSJ | Metal tolerance protein 3 OS=Oryza sativa subsp. japonica GN=MTP3 PE=2 SV=1 | 64 | 374 | 2.0E-60 |
| sp|Q5NA18|MTP5_ORYSJ | Metal tolerance protein 5 OS=Oryza sativa subsp. japonica GN=MTP5 PE=2 SV=1 | 45 | 367 | 1.0E-56 |
| sp|Q9M2P2|MTPC3_ARATH | Putative metal tolerance protein C3 OS=Arabidopsis thaliana GN=MTPC3 PE=3 SV=2 | 29 | 367 | 1.0E-56 |
| sp|O80632|MTP11_ARATH | Metal tolerance protein 11 OS=Arabidopsis thaliana GN=MTP11 PE=2 SV=1 | 46 | 367 | 3.0E-55 |
| sp|Q0DHJ5|MTP6_ORYSJ | Metal tolerance protein 6 OS=Oryza sativa subsp. japonica GN=MTP6 PE=2 SV=2 | 53 | 368 | 2.0E-39 |
| sp|Q57891|Y449_METJA | Uncharacterized transporter MJ0449 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0449 PE=3 SV=1 | 113 | 362 | 9.0E-15 |
| sp|P21559|P34_RICRS | Protein p34 OS=Rickettsia rickettsii (strain Sheila Smith) GN=p34 PE=3 SV=1 | 86 | 344 | 5.0E-08 |
| sp|Q6CZ45|FIEF_PECAS | Cation-efflux pump FieF OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=fieF PE=3 SV=1 | 86 | 362 | 2.0E-07 |
| sp|B1JQU5|FIEF_YERPY | Cation-efflux pump FieF OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=fieF PE=3 SV=1 | 99 | 348 | 3.0E-07 |
| sp|Q1C296|FIEF_YERPA | Cation-efflux pump FieF OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fieF PE=3 SV=1 | 99 | 348 | 3.0E-07 |
| sp|B2JZA2|FIEF_YERPB | Cation-efflux pump FieF OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=fieF PE=3 SV=1 | 99 | 348 | 3.0E-07 |
| sp|Q8ZJL7|FIEF_YERPE | Cation-efflux pump FieF OS=Yersinia pestis GN=fieF PE=3 SV=1 | 99 | 348 | 3.0E-07 |
| sp|A9R6A2|FIEF_YERPG | Cation-efflux pump FieF OS=Yersinia pestis bv. Antiqua (strain Angola) GN=fieF PE=3 SV=1 | 99 | 348 | 3.0E-07 |
| sp|Q1CD32|FIEF_YERPN | Cation-efflux pump FieF OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fieF PE=3 SV=1 | 99 | 348 | 3.0E-07 |
| sp|A4TSA8|FIEF_YERPP | Cation-efflux pump FieF OS=Yersinia pestis (strain Pestoides F) GN=fieF PE=3 SV=1 | 99 | 348 | 3.0E-07 |
| sp|Q66GA9|FIEF_YERPS | Cation-efflux pump FieF OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=fieF PE=3 SV=1 | 99 | 348 | 3.0E-07 |
| sp|C0SP78|YDFM_BACSU | Uncharacterized transporter YdfM OS=Bacillus subtilis (strain 168) GN=ydfM PE=3 SV=1 | 97 | 362 | 7.0E-07 |
| sp|P46348|YEAB_BACSU | Uncharacterized transporter YeaB OS=Bacillus subtilis (strain 168) GN=yeaB PE=3 SV=2 | 93 | 362 | 3.0E-06 |
| sp|A1JHZ2|FIEF_YERE8 | Cation-efflux pump FieF OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) GN=fieF PE=3 SV=1 | 86 | 348 | 5.0E-06 |
| sp|C6DHK1|FIEF_PECCP | Cation-efflux pump FieF OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fieF PE=3 SV=1 | 86 | 348 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0006812 | cation transport | Yes |
| GO:0008324 | cation transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 88 | 110 | 22 |
| 2 | 114 | 136 | 22 |
| 3 | 157 | 179 | 22 |
| 4 | 194 | 216 | 22 |
| 5 | 250 | 272 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10352 LPAVDGAAAEALENVPLNGGDGDAAEVPNPIDPDLLRQAKYDDFKGDRKKLRKFYTQQNELIDQFLGADDEERLA SDEEVRVRPKIRFAVYGSFAVNFCLFVIQLYAAVSTGSLSLFATAADAFMDLVSSCVMVITSKLARRPNVYRFPV GRTRIEPVGIIIFCALMATVAVELLIESARTLAGGQKAASPLQPVPLALVGVAILSKSSMMVFCFFYRRFPSVRV FFVDHRNDIVVNVFGLVMSIAGDHFIWYLDPVGAICIALLILFSWAANAFDQVWLLAGKSAPRAYISKLIYVTLT HSKHILEVDTCRAYHAGQKFYVEVDVVMDADTPLRVSHDVSQSLQRKLEGLADVERAFVHVDYDHDHNIHEEHKP LYEYTKSRRLRDYIRLTKRAIFR* |
| Coding | >Hirsu2|10352 CTGCCGGCCGTGGACGGCGCCGCGGCCGAGGCGCTGGAGAACGTGCCGCTCAACGGCGGCGACGGCGACGCGGCC GAGGTGCCCAACCCCATCGACCCGGACCTGCTGCGGCAGGCCAAGTACGACGACTTCAAGGGCGACCGCAAGAAG CTGCGCAAGTTCTACACGCAGCAGAACGAGCTGATCGACCAGTTCCTCGGCGCCGACGACGAGGAGCGCCTGGCG TCGGACGAGGAGGTGCGCGTGCGGCCCAAGATCCGCTTCGCCGTCTACGGCTCCTTCGCCGTCAACTTCTGCCTC TTCGTCATCCAGCTCTATGCCGCCGTCTCGACCGGCTCGCTCTCGCTCTTCGCGACGGCAGCCGATGCCTTCATG GACCTCGTCTCCTCGTGCGTCATGGTCATCACCTCCAAGCTCGCCAGGCGGCCCAACGTCTATCGCTTCCCCGTC GGCCGGACGAGGATCGAGCCGGTCGGCATCATCATCTTCTGCGCGCTCATGGCCACCGTCGCCGTCGAGCTGCTC ATCGAGTCGGCCCGCACTCTTGCCGGGGGCCAGAAGGCGGCATCGCCGTTGCAGCCCGTGCCGCTGGCCCTGGTC GGCGTTGCCATCTTGTCCAAGAGCTCGATGATGGTCTTCTGCTTCTTCTACCGCCGCTTCCCCTCCGTGCGCGTC TTCTTCGTCGACCACCGCAACGACATCGTCGTCAACGTCTTCGGCCTCGTCATGTCCATCGCGGGCGACCACTTC ATCTGGTACCTCGACCCGGTCGGCGCCATCTGCATCGCCCTCCTCATCCTCTTCTCCTGGGCCGCCAACGCCTTC GACCAGGTCTGGCTGCTGGCCGGCAAGAGCGCGCCCAGGGCGTACATCTCCAAGCTCATCTACGTCACCCTGACG CACAGCAAGCACATCCTCGAGGTCGACACCTGCCGCGCCTACCACGCCGGCCAGAAGTTCTACGTCGAGGTGGAC GTCGTCATGGACGCCGACACTCCGCTGCGCGTCTCCCACGACGTGAGCCAGTCTCTGCAGCGCAAGCTCGAGGGC CTGGCCGATGTCGAGAGGGCCTTCGTCCACGTCGACTACGACCACGACCACAACATCCACGAGGAGCACAAGCCG CTCTACGAGTACACCAAGTCGAGGAGGTTGAGGGACTACATCCGTCTCACCAAACGGGCCATCTTCCGCTAG |
| Transcript | >Hirsu2|10352 CTGCCGGCCGTGGACGGCGCCGCGGCCGAGGCGCTGGAGAACGTGCCGCTCAACGGCGGCGACGGCGACGCGGCC GAGGTGCCCAACCCCATCGACCCGGACCTGCTGCGGCAGGCCAAGTACGACGACTTCAAGGGCGACCGCAAGAAG CTGCGCAAGTTCTACACGCAGCAGAACGAGCTGATCGACCAGTTCCTCGGCGCCGACGACGAGGAGCGCCTGGCG TCGGACGAGGAGGTGCGCGTGCGGCCCAAGATCCGCTTCGCCGTCTACGGCTCCTTCGCCGTCAACTTCTGCCTC TTCGTCATCCAGCTCTATGCCGCCGTCTCGACCGGCTCGCTCTCGCTCTTCGCGACGGCAGCCGATGCCTTCATG GACCTCGTCTCCTCGTGCGTCATGGTCATCACCTCCAAGCTCGCCAGGCGGCCCAACGTCTATCGCTTCCCCGTC GGCCGGACGAGGATCGAGCCGGTCGGCATCATCATCTTCTGCGCGCTCATGGCCACCGTCGCCGTCGAGCTGCTC ATCGAGTCGGCCCGCACTCTTGCCGGGGGCCAGAAGGCGGCATCGCCGTTGCAGCCCGTGCCGCTGGCCCTGGTC GGCGTTGCCATCTTGTCCAAGAGCTCGATGATGGTCTTCTGCTTCTTCTACCGCCGCTTCCCCTCCGTGCGCGTC TTCTTCGTCGACCACCGCAACGACATCGTCGTCAACGTCTTCGGCCTCGTCATGTCCATCGCGGGCGACCACTTC ATCTGGTACCTCGACCCGGTCGGCGCCATCTGCATCGCCCTCCTCATCCTCTTCTCCTGGGCCGCCAACGCCTTC GACCAGGTCTGGCTGCTGGCCGGCAAGAGCGCGCCCAGGGCGTACATCTCCAAGCTCATCTACGTCACCCTGACG CACAGCAAGCACATCCTCGAGGTCGACACCTGCCGCGCCTACCACGCCGGCCAGAAGTTCTACGTCGAGGTGGAC GTCGTCATGGACGCCGACACTCCGCTGCGCGTCTCCCACGACGTGAGCCAGTCTCTGCAGCGCAAGCTCGAGGGC CTGGCCGATGTCGAGAGGGCCTTCGTCCACGTCGACTACGACCACGACCACAACATCCACGAGGAGCACAAGCCG CTCTACGAGTACACCAAGTCGAGGAGGTTGAGGGACTACATCCGTCTCACCAAACGGGCCATCTTCCGCTAG |
| Gene | >Hirsu2|10352 CTGCCGGCCGTGGACGGCGCCGCGGCCGAGGCGCTGGAGAACGTGCCGCTCAACGGCGGCGACGGCGACGCGGCC GAGGTGCCCAACCCCATCGACCCGGACCTGCTGCGGCAGGCCAAGTACGACGACTTCAAGGGCGACCGCAAGAAG CTGCGCAAGTTCTACACGCAGCAGAACGAGCTGATCGACCAGTTCCTCGGCGCCGACGACGAGGAGCGCCTGGCG TCGGACGAGGAGGTGCGCGTGCGGCCCAAGATCCGCTTCGCCGTCTACGGCTCCTTCGCCGTCAACTTCTGCCTC TTCGTCATCCAGCTCTATGCCGCCGTCTCGACCGGCTCGCTCTCGGTATGCTCAGCCCTTTTCTGCTCTTCTCCC GCTAAGCACCGGACTCGGCCCGCTGGTTGCGTATACATGTAGCTCTTCGCGACGGCAGCCGATGCCTTCATGGAC CTCGTCTCCTCGTGCGTCATGGTCATCACCTCCAAGCTCGCCAGGCGGCCCAACGTCTATCGCTTCCCCGTCGTG AGTCACTCGACCGGCTCCGCGTAGGGCGCGCGGGCGCGAGAGGCTGACGGAGGGAAAATCAAAAAACTCGCCACC CGTTTTCTCAGGGCCGGACGAGGATCGAGCCGGTCGGCATCATCATCTTCTGCGCGCTCATGGCCACCGTCGCCG TCGAGCTGCTCGTATGCGCCCCCTCCCGTCCCCCTTAACTCCTCTGCCGCTCGAGAGATCCGGTTCGTGTCTGCT GACCGGGGGGGGAGCAGATCGAGTCGGCCCGCACTCTTGCCGGGGGCCAGAAGGCGGCATCGCCGTTGCAGCCCG TGCCGCTGGCCCTGGTCGGCGTTGCCAGTATGGAGCTCGTCGCCCGGACGCGGTCGGTGCTGGTGCGGGTGTGCT GACGGCCGGCGCAGTCTTGTCCAAGAGCTCGATGATGGTCTTCTGCTTCTTCTACCGCCGCTTCCCCTCCGTGCG CGTCTTCTTCGTCGACCACCGCAACGACATCGTCGTCAACGTCTTCGGCCTCGTCATGTCCATCGCGGGCGACCA CTTCATCTGGTACCTCGACCCGGTCGGCGCCATCTGCATCGCCCTCCTCATCCTCTTCTCCTGGGCCGCCAACGC CTTCGACCAGGTCTGGCTGCTGGCCGGCAAGAGCGCGCCCAGGGCGTACATCTCCAAGCTCATCTACGTCACCCT GACGCACAGCAAGCACATCCTCGAGGTCGACACCGTGAGCTTCTCCCCCACCCCCCCCCCCCCNNNNNNNNNNNN NNNNNNNNNNCGCCGTCTGACCGTCGTGCGCCGCCAGTGCCGCGCCTACCACGCCGGCCAGAAGTTCTACGTCGA GGTGGACGTCGTCATGGACGCCGACACTCCGCTGCGCGTCTCCCACGACGTGAGCCAGTCTCTGCAGCGCAAGCT CGAGGGCCTGGCCGATGTCGAGAGGGCCTTCGTCCACGTCGACTACGACCACGACCACAACATCCACGAGGAGCA CAAGCCGCTCTACGAGTACACCAAGTCGAGGAGGTTGAGGGACTACATCCGTCTCACCAAACGGGCCATCTTCCG CTAG |