© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1035 |
| Gene name | |
| Location | Contig_1213:3840..4398 |
| Strand | + |
| Gene length (bp) | 558 |
| Transcript length (bp) | 558 |
| Coding sequence length (bp) | 558 |
| Protein length (aa) | 186 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09447 | Cnl2_NKP2 | Cnl2/NKP2 family protein | 4.0E-24 | 5 | 68 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000776 | kinetochore | Yes |
| GO:0099080 | supramolecular complex | No |
| GO:0043226 | organelle | No |
| GO:0043229 | intracellular organelle | No |
| GO:0005575 | cellular_component | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal|Nuclear export signal | 0.531 | 0.7728 | 0.05 | 0.0188 | 0.1742 | 0.0017 | 0.0818 | 0.0764 | 0.1038 | 0.0216 |
| Orthofinder run ID | 4 |
| Orthogroup | 1201 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1035 MAPSESDMLTKYLLQPAPLTAITSWEQFQALFPRPLRASPRLRSLFRDLQAQRNAVVDAVAANIAAETRRGAAMR REVLARRREAERDEADGEIEMERALFGAASSAAQARHTLPSIVPELDGAAGVLEADVRRLRDEEAALLAALGHTV GGLSDLRYGKLANGKLREQVLDGLESLEHACRDEP* |
| Coding | >Hirsu2|1035 ATGGCCCCCTCCGAGTCCGACATGCTCACCAAGTACCTGCTCCAGCCGGCGCCGCTGACGGCCATCACCAGCTGG GAGCAGTTCCAGGCGCTGTTCCCGCGACCGCTGCGCGCCTCGCCCCGCCTGCGCTCGCTCTTCCGCGATCTGCAG GCCCAGCGCAACGCCGTCGTCGACGCGGTGGCGGCCAACATCGCGGCCGAGACGAGGCGCGGCGCCGCCATGCGC AGGGAGGTCCTGGCCCGCCGCCGCGAGGCCGAGCGGGACGAGGCCGACGGCGAGATCGAGATGGAGCGCGCCCTC TTCGGCGCCGCCAGCTCCGCCGCCCAGGCCCGGCACACGCTGCCCTCCATCGTGCCCGAGCTCGACGGCGCCGCT GGCGTGCTTGAGGCCGACGTCCGCCGCCTGCGCGACGAGGAGGCCGCGCTGCTCGCCGCCCTCGGCCACACCGTC GGCGGCCTGAGCGATCTCCGCTACGGGAAGCTGGCCAACGGCAAGCTGAGGGAACAGGTCCTCGACGGCCTTGAA TCGCTGGAACATGCGTGCCGCGACGAGCCCTAG |
| Transcript | >Hirsu2|1035 ATGGCCCCCTCCGAGTCCGACATGCTCACCAAGTACCTGCTCCAGCCGGCGCCGCTGACGGCCATCACCAGCTGG GAGCAGTTCCAGGCGCTGTTCCCGCGACCGCTGCGCGCCTCGCCCCGCCTGCGCTCGCTCTTCCGCGATCTGCAG GCCCAGCGCAACGCCGTCGTCGACGCGGTGGCGGCCAACATCGCGGCCGAGACGAGGCGCGGCGCCGCCATGCGC AGGGAGGTCCTGGCCCGCCGCCGCGAGGCCGAGCGGGACGAGGCCGACGGCGAGATCGAGATGGAGCGCGCCCTC TTCGGCGCCGCCAGCTCCGCCGCCCAGGCCCGGCACACGCTGCCCTCCATCGTGCCCGAGCTCGACGGCGCCGCT GGCGTGCTTGAGGCCGACGTCCGCCGCCTGCGCGACGAGGAGGCCGCGCTGCTCGCCGCCCTCGGCCACACCGTC GGCGGCCTGAGCGATCTCCGCTACGGGAAGCTGGCCAACGGCAAGCTGAGGGAACAGGTCCTCGACGGCCTTGAA TCGCTGGAACATGCGTGCCGCGACGAGCCCTAG |
| Gene | >Hirsu2|1035 ATGGCCCCCTCCGAGTCCGACATGCTCACCAAGTACCTGCTCCAGCCGGCGCCGCTGACGGCCATCACCAGCTGG GAGCAGTTCCAGGCGCTGTTCCCGCGACCGCTGCGCGCCTCGCCCCGCCTGCGCTCGCTCTTCCGCGATCTGCAG GCCCAGCGCAACGCCGTCGTCGACGCGGTGGCGGCCAACATCGCGGCCGAGACGAGGCGCGGCGCCGCCATGCGC AGGGAGGTCCTGGCCCGCCGCCGCGAGGCCGAGCGGGACGAGGCCGACGGCGAGATCGAGATGGAGCGCGCCCTC TTCGGCGCCGCCAGCTCCGCCGCCCAGGCCCGGCACACGCTGCCCTCCATCGTGCCCGAGCTCGACGGCGCCGCT GGCGTGCTTGAGGCCGACGTCCGCCGCCTGCGCGACGAGGAGGCCGCGCTGCTCGCCGCCCTCGGCCACACCGTC GGCGGCCTGAGCGATCTCCGCTACGGGAAGCTGGCCAACGGCAAGCTGAGGGAACAGGTCCTCGACGGCCTTGAA TCGCTGGAACATGCGTGCCGCGACGAGCCCTAG |