Protein ID | Hirsu2|10295 |
Gene name | |
Location | Contig_818:6810..9165 |
Strand | + |
Gene length (bp) | 2355 |
Transcript length (bp) | 2010 |
Coding sequence length (bp) | 2010 |
Protein length (aa) | 670 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF03707 | MHYT | Bacterial signalling protein N terminal repeat | 1.3E-08 | 67 | 120 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 40 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 20 | 42 | 22 |
2 | 55 | 77 | 22 |
3 | 92 | 117 | 25 |
4 | 124 | 146 | 22 |
5 | 161 | 183 | 22 |
6 | 196 | 218 | 22 |
7 | 238 | 260 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|10295 MATSEELFEQYRGHFVPYKFEAGFVCLSYAVSLIGTGSTLELIRRQTSNRGFHNFLLLTGAAISMGGIAIWSMNY IGNRAISILDGQRELQIAYTTGLTVLSLFIPIIVLFIAFVIISTHGRVCWIRITLSGTISGATFIGMHYLVDASI HNYKASYHAGNIVGAALIAVFANISVLACFFVFESAWTNVWWKRVCSAMLFAGAVSGMQWCAATGTRYRLLHLYR PGDGISRDDSLIAVICLSVGAFVIMIISIIYSHWIKSDYAKKARKVALAAAVFDERGRIMVSQEGLLPSEVITDK FIPTSCNDVFDTSHPVFHWIFWASQNWPKVARVIGAMQSHVAALCSKKFARKVKLKLLGDNGEAVENYNMILCEL FCLAALALSSKMKESLETAGSLWDEIFATGDETTQWTRMPSVSDGSSDAASLYKPQSDDMSEKGQSVVSNELGQG SLMFLVRHVNSRRDTERLEAAGYRFAELHHVVGTIRSSMKIKTPDFEEKLRKMSRRSDRNALLSPGAHLGLFAVR ARLDYGGFDVLVPKKTKNLLPAVRLQKEHLEAWQQAMVQGFQGLTAPVIVQQLQLGDFESGRERRFAGQLLDSII SLREWVDHPVFDEARFNPQIVQVPCSSLGGASTCSMVAFQLVLPIHFNVTFQNFEVMPLHERTNLHPTK* |
Coding | >Hirsu2|10295 ATGGCGACCAGCGAGGAGTTGTTCGAGCAGTACAGAGGCCACTTCGTGCCTTACAAGTTCGAGGCCGGCTTTGTA TGTCTGAGCTACGCCGTCAGTCTTATCGGCACCGGTTCGACACTCGAACTGATCAGGCGTCAAACCTCCAACAGG GGCTTCCATAACTTCCTCTTGTTGACAGGGGCTGCGATTTCCATGGGAGGTATTGCTATATGGTCTATGAATTAT ATTGGCAACCGCGCAATCTCTATTCTCGACGGACAGCGTGAGCTCCAGATTGCCTACACCACCGGCCTAACCGTC CTCTCCCTCTTCATTCCAATCATTGTCCTCTTCATCGCATTCGTCATCATCAGCACTCATGGAAGAGTATGTTGG ATCCGCATCACCTTATCAGGCACGATCTCGGGCGCAACTTTCATCGGCATGCATTACTTGGTGGACGCATCTATC CACAACTATAAGGCCTCGTACCACGCTGGTAACATCGTCGGCGCGGCGTTGATAGCCGTCTTCGCCAATATATCC GTCCTGGCTTGCTTTTTCGTCTTCGAGTCGGCGTGGACAAACGTCTGGTGGAAACGTGTATGTTCTGCTATGCTG TTCGCCGGCGCTGTTTCCGGCATGCAGTGGTGCGCCGCTACCGGAACACGGTATAGGCTGCTTCACCTGTATCGC CCAGGAGACGGCATATCACGCGATGATTCCCTCATTGCTGTAATTTGCTTGTCTGTCGGCGCTTTCGTCATCATG ATTATCAGCATTATCTACTCGCACTGGATTAAGAGCGATTATGCGAAGAAAGCGCGAAAGGTGGCTCTCGCGGCA GCCGTCTTTGATGAGCGTGGAAGAATCATGGTCAGCCAGGAAGGCCTACTACCCAGCGAAGTCATCACCGACAAG TTCATTCCAACATCGTGCAACGACGTGTTCGATACTTCTCATCCAGTTTTCCACTGGATATTCTGGGCCTCTCAA AATTGGCCTAAAGTTGCCAGGGTAATTGGTGCCATGCAGTCTCATGTTGCCGCCCTCTGTTCGAAAAAGTTTGCA CGCAAGGTGAAACTGAAGCTCCTTGGCGACAATGGGGAGGCGGTCGAGAACTACAACATGATCCTCTGCGAGCTT TTCTGTCTGGCCGCCTTGGCGTTATCTTCTAAGATGAAGGAGAGCCTCGAGACTGCCGGAAGCCTTTGGGACGAG ATCTTCGCAACGGGAGACGAGACAACTCAATGGACTCGTATGCCGTCGGTGTCTGATGGAAGCTCCGACGCTGCA TCTTTATACAAGCCGCAATCGGACGACATGAGTGAGAAAGGTCAAAGTGTGGTTTCTAACGAGCTCGGACAAGGA TCCCTGATGTTTCTCGTCCGCCACGTCAACTCGCGACGCGATACAGAGAGGCTCGAGGCTGCCGGGTATCGGTTC GCCGAGCTGCATCACGTTGTGGGCACTATCCGCAGCAGCATGAAGATCAAGACGCCGGACTTTGAAGAAAAATTA CGCAAGATGTCTCGTCGCTCGGACAGGAATGCATTGCTAAGTCCCGGAGCTCACCTTGGGCTGTTTGCGGTACGG GCAAGGCTCGATTACGGTGGGTTCGACGTCTTAGTCCCCAAGAAGACCAAGAACCTGCTCCCCGCCGTCCGGTTA CAAAAGGAGCACCTCGAAGCATGGCAGCAGGCCATGGTACAAGGTTTCCAGGGACTCACCGCTCCTGTCATCGTG CAGCAGCTGCAGCTGGGAGATTTCGAGTCGGGCCGAGAGCGCCGGTTCGCCGGACAACTGCTAGACTCTATCATC TCGCTCAGGGAATGGGTCGATCACCCTGTTTTCGACGAGGCGAGATTCAATCCTCAGATTGTCCAAGTGCCGTGC TCTTCGCTGGGCGGGGCATCTACCTGCTCCATGGTAGCGTTCCAACTGGTGCTGCCGATTCACTTCAACGTCACG TTTCAGAATTTCGAGGTCATGCCGCTGCACGAGCGGACCAACTTGCACCCCACAAAATGA |
Transcript | >Hirsu2|10295 ATGGCGACCAGCGAGGAGTTGTTCGAGCAGTACAGAGGCCACTTCGTGCCTTACAAGTTCGAGGCCGGCTTTGTA TGTCTGAGCTACGCCGTCAGTCTTATCGGCACCGGTTCGACACTCGAACTGATCAGGCGTCAAACCTCCAACAGG GGCTTCCATAACTTCCTCTTGTTGACAGGGGCTGCGATTTCCATGGGAGGTATTGCTATATGGTCTATGAATTAT ATTGGCAACCGCGCAATCTCTATTCTCGACGGACAGCGTGAGCTCCAGATTGCCTACACCACCGGCCTAACCGTC CTCTCCCTCTTCATTCCAATCATTGTCCTCTTCATCGCATTCGTCATCATCAGCACTCATGGAAGAGTATGTTGG ATCCGCATCACCTTATCAGGCACGATCTCGGGCGCAACTTTCATCGGCATGCATTACTTGGTGGACGCATCTATC CACAACTATAAGGCCTCGTACCACGCTGGTAACATCGTCGGCGCGGCGTTGATAGCCGTCTTCGCCAATATATCC GTCCTGGCTTGCTTTTTCGTCTTCGAGTCGGCGTGGACAAACGTCTGGTGGAAACGTGTATGTTCTGCTATGCTG TTCGCCGGCGCTGTTTCCGGCATGCAGTGGTGCGCCGCTACCGGAACACGGTATAGGCTGCTTCACCTGTATCGC CCAGGAGACGGCATATCACGCGATGATTCCCTCATTGCTGTAATTTGCTTGTCTGTCGGCGCTTTCGTCATCATG ATTATCAGCATTATCTACTCGCACTGGATTAAGAGCGATTATGCGAAGAAAGCGCGAAAGGTGGCTCTCGCGGCA GCCGTCTTTGATGAGCGTGGAAGAATCATGGTCAGCCAGGAAGGCCTACTACCCAGCGAAGTCATCACCGACAAG TTCATTCCAACATCGTGCAACGACGTGTTCGATACTTCTCATCCAGTTTTCCACTGGATATTCTGGGCCTCTCAA AATTGGCCTAAAGTTGCCAGGGTAATTGGTGCCATGCAGTCTCATGTTGCCGCCCTCTGTTCGAAAAAGTTTGCA CGCAAGGTGAAACTGAAGCTCCTTGGCGACAATGGGGAGGCGGTCGAGAACTACAACATGATCCTCTGCGAGCTT TTCTGTCTGGCCGCCTTGGCGTTATCTTCTAAGATGAAGGAGAGCCTCGAGACTGCCGGAAGCCTTTGGGACGAG ATCTTCGCAACGGGAGACGAGACAACTCAATGGACTCGTATGCCGTCGGTGTCTGATGGAAGCTCCGACGCTGCA TCTTTATACAAGCCGCAATCGGACGACATGAGTGAGAAAGGTCAAAGTGTGGTTTCTAACGAGCTCGGACAAGGA TCCCTGATGTTTCTCGTCCGCCACGTCAACTCGCGACGCGATACAGAGAGGCTCGAGGCTGCCGGGTATCGGTTC GCCGAGCTGCATCACGTTGTGGGCACTATCCGCAGCAGCATGAAGATCAAGACGCCGGACTTTGAAGAAAAATTA CGCAAGATGTCTCGTCGCTCGGACAGGAATGCATTGCTAAGTCCCGGAGCTCACCTTGGGCTGTTTGCGGTACGG GCAAGGCTCGATTACGGTGGGTTCGACGTCTTAGTCCCCAAGAAGACCAAGAACCTGCTCCCCGCCGTCCGGTTA CAAAAGGAGCACCTCGAAGCATGGCAGCAGGCCATGGTACAAGGTTTCCAGGGACTCACCGCTCCTGTCATCGTG CAGCAGCTGCAGCTGGGAGATTTCGAGTCGGGCCGAGAGCGCCGGTTCGCCGGACAACTGCTAGACTCTATCATC TCGCTCAGGGAATGGGTCGATCACCCTGTTTTCGACGAGGCGAGATTCAATCCTCAGATTGTCCAAGTGCCGTGC TCTTCGCTGGGCGGGGCATCTACCTGCTCCATGGTAGCGTTCCAACTGGTGCTGCCGATTCACTTCAACGTCACG TTTCAGAATTTCGAGGTCATGCCGCTGCACGAGCGGACCAACTTGCACCCCACAAAATGA |
Gene | >Hirsu2|10295 ATGGCGACCAGCGAGGAGTTGTTCGAGCAGTACAGAGGCCACTTCGTGCCTTACAAGTTCGAGGCCGGCTTTGTA TGTCTGAGCTACGCCGTCAGTCTTATCGGCACCGGTTCGACACTCGAACTGATCAGGCGTCAAACCTCCAACAGG GGCTTCCATAACTTGTATGCTGCCCCCAACACCTCCCTCGGGCTGCGAGGAAAGAGCGGGACTGACTGTTGAGAT GAAGCCTCTTGTTGACAGGGGCTGCGATTTCCATGGGAGGTATTGCTATATGGTCTATGGTACGTCTCCTCCTAT TCGCCGATTGCATACCCCGGGAGCCCGGAGCATTCAGTCGCTTACGGCCAGTGGCAGAATTATATTGGCAACCGC GCAATCTCTATTCTCGACGGACAGCGTGAGCTCCAGATTGCCTACACCACCGGCCTAACCGTCCTCTCCCTCTTC ATTCCAATCATTGTCCTCTTCATCGCATTCGTCATCATCAGCACTCATGGAAGAGTATGTTGGATCCGCATCACC TTATCAGGCACGATCTCGGGCGCAACTTTCATCGGCATGCATTACTTGGTGGACGCATCTATCCACAACTATAAG GCCTCGTACCACGCTGGTAACATCGTCGGCGCGGCGTTGATAGCCGTCTTCGCCAATATATCCGTCCTGGCTTGC TTTTTCGTCTTCGAGTCGGCGTGGACAAACGTCTGGTGGAAACGTGTATGTTCTGCTATGCTGTTCGCCGGCGCT GTTTCCGGCATGCAGTGGTGCGCCGCTACCGGAACACGGTATAGGCTGCTTCACCTGTATCGCCCAGGAGACGGC ATATCACGCGATGATTCCCTCATTGCTGTAATTTGCTTGGTGAGTCACGAAGAGTCTCCTTCCCCGTCGCGCACA CAACTCTGACCATGGTCAAGTCTGTCGGCGCTTTCGTCATCATGATTATCAGCATTATCTACTCGCACTGGATTA AGAGCGATTATGCGAAGAAAGCGCGAAAGGTGGCTCTCGCGGCAGCCGTCTTTGATGAGCGTGGAAGAATCATGG TCAGCCAGGAAGGCCTACTACCCAGCGAAGTCATCACCGACAAGTTCATTCCAACAGTCAGTGCTGTGGCGGTCC TCTCTTTGTTTTATGATACTGATTCTTTCCCCAGTCGTGCAACGACGTGTTCGATACTTCTCATCCAGTTTTCCA CTGGATATTCTGGGCCTCTCAAAATTGGCCTAAAGTTGCCAGGGTAATTGGTGCCATGCAGTCTCATGTTGCCGC CCTCTGTTCGAAAAAGTTTGCACGCAAGGTGAAACTGAAGCTCCTTGGCGACAATGGGGAGGCGGTCGAGAACTA CAACATGATCCTCTGCGAGCTTTTCTGTCTGGCCGCCTTGGCGTTATCTTCTAAGATGAAGGAGAGCCTCGAGAC TGCCGGAAGCCTTTGGGACGAGATCTTCGCAACGGGAGACGAGACAACTCAATGGACTCGTATGCCGTCGGTGTC TGATGGAAGCTCCGACGCTGCATCTTTATACAAGCCGCAATCGGACGACATGAGTGAGAAAGGTCAAAGTGTGGT TTCTAACGAGCTCGGACAAGGATCCCTGATGTTTCTCGTCCGCCACGTCAACTCGCGACGCGATACAGAGAGGCT CGAGGCTGCCGGGTATCGGTTCGCCGAGCTGCATCACGTTGTGGGCACTATCCGCAGCAGCATGAAGATCAAGAC GCCGGACTTTGAAGAAAAATTACGCAAGATGTCTCGTCGCTCGGACAGGAATGCATTGCTAAGTCCCGGAGCTCA CCTTGGGCTGTTTGCGGTACGGGCAAGGCTCGATTACGGTGGGTTCGACGTCTTAGTCCCCAAGAAGACCAAGAA CCTGCTCCCCGCCGTCCGGTTACAAAAGGAGCACCTCGAAGCATGGCAGCAGGCCATGGTACAAGGTTTCCAGGG ACTCACCGCTCCTGTCATCGTGCAGCAGCTGCAGCTGGGAGATTTCGAGTCGGGCCGAGAGCGCCGGTTCGCCGG ACAACTGCTAGACTCTATCATCTCGCTCAGGGAATGGGTCGATCACCCTGTTTTCGACGAGGCGAGATTCAATCC TCAGATTGTCCAAGTGCCGTGCTCTTCGCTGGGCGGGGCATCTACCTGCTCCATGGTAGCGTTCCAACTGGTGCT GCCGATTCACTTCAACGTCACGTTTCAGAATTTCGAGGTCATGCCGCTGCAGTTCTTCAAGCTGCGCCAGAAATT GAACCGAGAGCATGCAAACTTTGCCAGCTACTTGAGCCGCGCCGATAACAAGAGTCCAATCTTACCGTTCCCAGC GAGCGGACCAACTTGCACCCCACAAAATGA |