© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10288 |
| Gene name | |
| Location | Contig_816:10962..11526 |
| Strand | + |
| Gene length (bp) | 564 |
| Transcript length (bp) | 564 |
| Coding sequence length (bp) | 564 |
| Protein length (aa) | 188 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 6.3E-15 | 45 | 179 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q99385|VCX1_YEAST | Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 | 19 | 181 | 2.0E-36 |
| sp|O59768|VCX1_SCHPO | Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vcx1 PE=3 SV=1 | 20 | 178 | 2.0E-30 |
| sp|Q75XW3|CAX_APHHA | Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 | 48 | 182 | 4.0E-27 |
| sp|P74072|CAX_SYNY3 | Ca(2+)/H(+) antiporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1336 PE=1 SV=1 | 48 | 179 | 3.0E-25 |
| sp|Q39254|CAX2_ARATH | Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2 | 32 | 177 | 1.0E-23 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q99385|VCX1_YEAST | Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 | 19 | 181 | 2.0E-36 |
| sp|O59768|VCX1_SCHPO | Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vcx1 PE=3 SV=1 | 20 | 178 | 2.0E-30 |
| sp|Q75XW3|CAX_APHHA | Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 | 48 | 182 | 4.0E-27 |
| sp|P74072|CAX_SYNY3 | Ca(2+)/H(+) antiporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1336 PE=1 SV=1 | 48 | 179 | 3.0E-25 |
| sp|Q39254|CAX2_ARATH | Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2 | 32 | 177 | 1.0E-23 |
| sp|Q6K1C4|CAX3_ORYSJ | Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2 | 45 | 177 | 4.0E-23 |
| sp|Q5KQN0|CAX2_ORYSJ | Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2 | 46 | 177 | 8.0E-23 |
| sp|Q8L783|CAX5_ARATH | Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1 | 31 | 177 | 2.0E-22 |
| sp|Q945S5|CAX4_ARATH | Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2 | 30 | 177 | 2.0E-21 |
| sp|Q9LFZ8|CAX6_ARATH | Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3 | 8 | 177 | 1.0E-20 |
| sp|Q93Z81|CAX3_ARATH | Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1 | 49 | 177 | 2.0E-19 |
| sp|Q769E5|CAX1A_ORYSJ | Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1 | 19 | 177 | 3.0E-19 |
| sp|Q39253|CAX1_ARATH | Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3 | 20 | 177 | 6.0E-19 |
| sp|Q6YXZ1|CAX4_ORYSJ | Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1 | 31 | 176 | 1.0E-17 |
| sp|O34840|CHAA_BACSU | Ca(2+)/H(+) antiporter ChaA OS=Bacillus subtilis (strain 168) GN=chaA PE=1 SV=1 | 19 | 181 | 2.0E-16 |
| sp|Q5TKG3|CAX1B_ORYSJ | Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1 | 60 | 177 | 2.0E-15 |
| sp|Q5KTQ9|CAX1C_ORYSJ | Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1 | 57 | 177 | 4.0E-12 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051179 | localization | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 79 | 101 | 22 |
| 2 | 114 | 136 | 22 |
| 3 | 146 | 163 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10288 LSFCLRLCVLATIFRTQGYFQSVTHADFFVDDSQEADHELDAVSSCVVLVLSTLGVATCSDRLVDSIDGFVKALG LSRSFVGLIIVPIVGNLGCFVGTVEWPRANRIQLAISVIVSSTLQISLFVTPLLVVVGWVIDQKMSLQFDTFQTT VLTISTLVVNCLVRDGETNYFEGVLLVATCVCPCALA* |
| Coding | >Hirsu2|10288 CTGTCTTTCTGCTTGCGCCTTTGCGTGTTGGCAACCATCTTCCGTACCCAAGGTTACTTCCAGTCCGTGACGCAC GCCGACTTCTTCGTCGACGACAGCCAAGAGGCCGACCACGAGCTGGATGCGGTGTCCAGCTGCGTCGTCCTCGTC CTTTCCACGCTCGGCGTCGCCACCTGCTCAGATCGCCTGGTCGACAGCATCGACGGCTTCGTCAAGGCGCTGGGC CTAAGCCGTAGCTTTGTCGGGCTCATAATCGTGCCCATCGTCGGCAACCTGGGCTGTTTCGTCGGCACCGTCGAG TGGCCCAGGGCCAACCGCATACAGCTGGCCATATCCGTCATCGTGAGCAGCACGCTGCAGATCTCGCTCTTCGTC ACGCCCTTGCTCGTCGTCGTCGGCTGGGTCATCGACCAGAAGATGTCGCTACAGTTCGACACGTTCCAGACGACT GTCCTGACCATATCCACTCTCGTCGTCAACTGTCTGGTGCGAGATGGAGAAACGAACTACTTCGAGGGCGTTCTC CTGGTCGCTACGTGCGTGTGTCCCTGCGCTCTTGCATAG |
| Transcript | >Hirsu2|10288 CTGTCTTTCTGCTTGCGCCTTTGCGTGTTGGCAACCATCTTCCGTACCCAAGGTTACTTCCAGTCCGTGACGCAC GCCGACTTCTTCGTCGACGACAGCCAAGAGGCCGACCACGAGCTGGATGCGGTGTCCAGCTGCGTCGTCCTCGTC CTTTCCACGCTCGGCGTCGCCACCTGCTCAGATCGCCTGGTCGACAGCATCGACGGCTTCGTCAAGGCGCTGGGC CTAAGCCGTAGCTTTGTCGGGCTCATAATCGTGCCCATCGTCGGCAACCTGGGCTGTTTCGTCGGCACCGTCGAG TGGCCCAGGGCCAACCGCATACAGCTGGCCATATCCGTCATCGTGAGCAGCACGCTGCAGATCTCGCTCTTCGTC ACGCCCTTGCTCGTCGTCGTCGGCTGGGTCATCGACCAGAAGATGTCGCTACAGTTCGACACGTTCCAGACGACT GTCCTGACCATATCCACTCTCGTCGTCAACTGTCTGGTGCGAGATGGAGAAACGAACTACTTCGAGGGCGTTCTC CTGGTCGCTACGTGCGTGTGTCCCTGCGCTCTTGCATAG |
| Gene | >Hirsu2|10288 CTGTCTTTCTGCTTGCGCCTTTGCGTGTTGGCAACCATCTTCCGTACCCAAGGTTACTTCCAGTCCGTGACGCAC GCCGACTTCTTCGTCGACGACAGCCAAGAGGCCGACCACGAGCTGGATGCGGTGTCCAGCTGCGTCGTCCTCGTC CTTTCCACGCTCGGCGTCGCCACCTGCTCAGATCGCCTGGTCGACAGCATCGACGGCTTCGTCAAGGCGCTGGGC CTAAGCCGTAGCTTTGTCGGGCTCATAATCGTGCCCATCGTCGGCAACCTGGGCTGTTTCGTCGGCACCGTCGAG TGGCCCAGGGCCAACCGCATACAGCTGGCCATATCCGTCATCGTGAGCAGCACGCTGCAGATCTCGCTCTTCGTC ACGCCCTTGCTCGTCGTCGTCGGCTGGGTCATCGACCAGAAGATGTCGCTACAGTTCGACACGTTCCAGACGACT GTCCTGACCATATCCACTCTCGTCGTCAACTGTCTGGTGCGAGATGGAGAAACGAACTACTTCGAGGGCGTTCTC CTGGTCGCTACGTGCGTGTGTCCCTGCGCTCTTGCATAG |