© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1028 |
| Gene name | |
| Location | Contig_1212:1152..1984 |
| Strand | - |
| Gene length (bp) | 832 |
| Transcript length (bp) | 771 |
| Coding sequence length (bp) | 771 |
| Protein length (aa) | 257 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF20183 | DUF6546 | Family of unknown function (DUF6546) | 1.1E-39 | 32 | 212 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | 0.5533 | 0.6402 | 0.2381 | 0.1345 | 0.3297 | 0.01 | 0.0478 | 0.1869 | 0.0723 | 0.1313 |
| Orthofinder run ID | 4 |
| Orthogroup | 1171 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1028 LKSLRHELWGGLCRESQLKYAQDYTGFVFSHLPPSLRRLHLSQEFKRMLHARGDRLTWWSKSMSFLAGFVRASRQ LEHLTVYDIVDAAHFLGNHTLRSVRQHDHKWTNLQTLCLRSSRMRPDRRGDVDALLQRAAVAALSMPKLCRMELW GCEDGKGCHFCYRVSDGRRQHRLTWRSNWDEDLRFSRPTERLWSRVARQQYVFADLDVRYMPIPVRRLENERMRL VILHGWSSPPDVLGALSIYQLVVEDRNCLRL* |
| Coding | >Hirsu2|1028 CTGAAGAGCCTTCGCCACGAGCTATGGGGCGGCCTCTGCCGCGAATCACAGCTGAAATATGCCCAAGACTACACG GGCTTCGTCTTCTCGCATCTCCCCCCCTCGCTCCGCCGGCTGCATCTGTCTCAAGAGTTCAAGAGGATGCTGCAC GCGCGCGGGGATCGGCTCACGTGGTGGTCCAAGTCCATGTCTTTCCTCGCCGGCTTCGTCCGGGCCAGCCGACAG CTCGAGCATCTGACCGTGTACGACATCGTCGACGCCGCGCACTTCTTGGGCAACCACACGCTCCGATCCGTCCGC CAACACGACCACAAGTGGACCAACCTCCAGACGCTGTGCCTGAGGTCGAGCCGGATGCGTCCGGACCGGAGGGGC GACGTCGACGCGCTGCTGCAGCGCGCCGCCGTCGCCGCCCTCTCGATGCCGAAGCTGTGCAGGATGGAGCTCTGG GGCTGCGAGGATGGAAAGGGCTGCCACTTCTGCTATCGGGTGTCGGACGGACGACGACAGCACCGCCTTACCTGG AGAAGCAACTGGGACGAGGACCTGCGGTTCAGTCGTCCAACTGAGCGGCTATGGAGCCGCGTGGCGCGGCAGCAG TACGTCTTCGCCGACCTGGACGTCAGATACATGCCGATCCCGGTGAGGAGGCTAGAGAACGAGAGAATGCGACTC GTCATTCTGCACGGGTGGAGCTCGCCGCCAGATGTGCTCGGCGCGCTTTCCATCTACCAGTTGGTCGTGGAGGAC AGGAACTGTCTTCGCCTGTGA |
| Transcript | >Hirsu2|1028 CTGAAGAGCCTTCGCCACGAGCTATGGGGCGGCCTCTGCCGCGAATCACAGCTGAAATATGCCCAAGACTACACG GGCTTCGTCTTCTCGCATCTCCCCCCCTCGCTCCGCCGGCTGCATCTGTCTCAAGAGTTCAAGAGGATGCTGCAC GCGCGCGGGGATCGGCTCACGTGGTGGTCCAAGTCCATGTCTTTCCTCGCCGGCTTCGTCCGGGCCAGCCGACAG CTCGAGCATCTGACCGTGTACGACATCGTCGACGCCGCGCACTTCTTGGGCAACCACACGCTCCGATCCGTCCGC CAACACGACCACAAGTGGACCAACCTCCAGACGCTGTGCCTGAGGTCGAGCCGGATGCGTCCGGACCGGAGGGGC GACGTCGACGCGCTGCTGCAGCGCGCCGCCGTCGCCGCCCTCTCGATGCCGAAGCTGTGCAGGATGGAGCTCTGG GGCTGCGAGGATGGAAAGGGCTGCCACTTCTGCTATCGGGTGTCGGACGGACGACGACAGCACCGCCTTACCTGG AGAAGCAACTGGGACGAGGACCTGCGGTTCAGTCGTCCAACTGAGCGGCTATGGAGCCGCGTGGCGCGGCAGCAG TACGTCTTCGCCGACCTGGACGTCAGATACATGCCGATCCCGGTGAGGAGGCTAGAGAACGAGAGAATGCGACTC GTCATTCTGCACGGGTGGAGCTCGCCGCCAGATGTGCTCGGCGCGCTTTCCATCTACCAGTTGGTCGTGGAGGAC AGGAACTGTCTTCGCCTGTGA |
| Gene | >Hirsu2|1028 CTGAAGAGCCTTCGCCACGAGCTATGGGGCGGCCTCTGCCGCGAATCACAGCTGAAATATGCCCAAGGTCTGTTG CCGTCCTCTGCGGCCACGGCGTCGACCGGACGAAGCTGATGTCGAGGGAGCAGACTACACGGGCTTCGTCTTCTC GCATCTCCCCCCCTCGCTCCGCCGGCTGCATCTGTCTCAAGAGTTCAAGAGGATGCTGCACGCGCGCGGGGATCG GCTCACGTGGTGGTCCAAGTCCATGTCTTTCCTCGCCGGCTTCGTCCGGGCCAGCCGACAGCTCGAGCATCTGAC CGTGTACGACATCGTCGACGCCGCGCACTTCTTGGGCAACCACACGCTCCGATCCGTCCGCCAACACGACCACAA GTGGACCAACCTCCAGACGCTGTGCCTGAGGTCGAGCCGGATGCGTCCGGACCGGAGGGGCGACGTCGACGCGCT GCTGCAGCGCGCCGCCGTCGCCGCCCTCTCGATGCCGAAGCTGTGCAGGATGGAGCTCTGGGGCTGCGAGGATGG AAAGGGCTGCCACTTCTGCTATCGGGTGTCGGACGGACGACGACAGCACCGCCTTACCTGGAGAAGCAACTGGGA CGAGGACCTGCGGTTCAGTCGTCCAACTGAGCGGCTATGGAGCCGCGTGGCGCGGCAGCAGTACGTCTTCGCCGA CCTGGACGTCAGATACATGCCGATCCCGGTGAGGAGGCTAGAGAACGAGAGAATGCGACTCGTCATTCTGCACGG GTGGAGCTCGCCGCCAGATGTGCTCGGCGCGCTTTCCATCTACCAGTTGGTCGTGGAGGACAGGAACTGTCTTCG CCTGTGA |