© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|1025 |
| Gene name | |
| Location | Contig_1210:5428..5815 |
| Strand | + |
| Gene length (bp) | 387 |
| Transcript length (bp) | 387 |
| Coding sequence length (bp) | 387 |
| Protein length (aa) | 129 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.5272 | 0.7527 | 0.261 | 0.1329 | 0.1771 | 0.0557 | 0.0764 | 0.1389 | 0.0563 | 0.0058 |
| Orthofinder run ID | 4 |
| Orthogroup | 8434 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|1025 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1025 MHGREKQYMMYPDPSTHPRSLTHPSRHAALGPRPREREGKITEASPGREKEGDLAGGGGAVIGPPSIHPSIVRTV LGRVSRQQRHDAAAHVPAQARQDRPPTDRAGVVTGGGPKPKPVPRPGMLERRP* |
| Coding | >Hirsu2|1025 ATGCATGGCCGCGAGAAACAGTACATGATGTACCCAGACCCATCCACCCATCCGAGATCACTCACGCACCCGTCC AGACATGCAGCACTCGGACCAAGGCCGCGAGAGAGAGAGGGCAAGATTACCGAAGCAAGCCCAGGGAGAGAAAAG GAGGGCGATCTTGCAGGAGGAGGAGGAGCCGTCATCGGGCCCCCGTCCATCCATCCATCCATCGTTCGTACCGTC CTTGGTCGTGTCTCTCGACAGCAGCGACATGATGCAGCAGCCCATGTGCCAGCCCAAGCGCGCCAGGACAGGCCG CCGACAGACAGGGCAGGGGTCGTGACTGGAGGCGGCCCCAAGCCCAAGCCGGTGCCGCGGCCAGGCATGCTGGAG CGACGCCCGTGA |
| Transcript | >Hirsu2|1025 ATGCATGGCCGCGAGAAACAGTACATGATGTACCCAGACCCATCCACCCATCCGAGATCACTCACGCACCCGTCC AGACATGCAGCACTCGGACCAAGGCCGCGAGAGAGAGAGGGCAAGATTACCGAAGCAAGCCCAGGGAGAGAAAAG GAGGGCGATCTTGCAGGAGGAGGAGGAGCCGTCATCGGGCCCCCGTCCATCCATCCATCCATCGTTCGTACCGTC CTTGGTCGTGTCTCTCGACAGCAGCGACATGATGCAGCAGCCCATGTGCCAGCCCAAGCGCGCCAGGACAGGCCG CCGACAGACAGGGCAGGGGTCGTGACTGGAGGCGGCCCCAAGCCCAAGCCGGTGCCGCGGCCAGGCATGCTGGAG CGACGCCCGTGA |
| Gene | >Hirsu2|1025 ATGCATGGCCGCGAGAAACAGTACATGATGTACCCAGACCCATCCACCCATCCGAGATCACTCACGCACCCGTCC AGACATGCAGCACTCGGACCAAGGCCGCGAGAGAGAGAGGGCAAGATTACCGAAGCAAGCCCAGGGAGAGAAAAG GAGGGCGATCTTGCAGGAGGAGGAGGAGCCGTCATCGGGCCCCCGTCCATCCATCCATCCATCGTTCGTACCGTC CTTGGTCGTGTCTCTCGACAGCAGCGACATGATGCAGCAGCCCATGTGCCAGCCCAAGCGCGCCAGGACAGGCCG CCGACAGACAGGGCAGGGGTCGTGACTGGAGGCGGCCCCAAGCCCAAGCCGGTGCCGCGGCCAGGCATGCTGGAG CGACGCCCGTGA |