Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|10248
Gene name
Location	Contig_81:14551..17083
Strand	+
Gene length (bp)	2532
Transcript length (bp)	2457
Coding sequence length (bp)	2457
Protein length (aa)	819

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04950	RIBIOP_C	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal	4.8E-112	488	789
PF08142	AARP2CN	AARP2CN (NUC121) domain	3.3E-17	231	304

Swissprot hits

[Show all]

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O13956\|TSR1_SCHPO	Ribosome biogenesis protein tsr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsr1 PE=3 SV=1	7	789	0.0E+00
sp\|Q07381\|TSR1_YEAST	Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1	5	792	2.0E-169
sp\|Q5SWD9\|TSR1_MOUSE	Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=1 SV=1	35	790	8.0E-107
sp\|Q5XGY1\|TSR1_XENLA	Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1	1	790	3.0E-106
sp\|Q2NL82\|TSR1_HUMAN	Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1	17	790	2.0E-103

[Show all]

[Show less]

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O13956\|TSR1_SCHPO	Ribosome biogenesis protein tsr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsr1 PE=3 SV=1	7	789	0.0E+00
sp\|Q07381\|TSR1_YEAST	Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1	5	792	2.0E-169
sp\|Q5SWD9\|TSR1_MOUSE	Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=1 SV=1	35	790	8.0E-107
sp\|Q5XGY1\|TSR1_XENLA	Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1	1	790	3.0E-106
sp\|Q2NL82\|TSR1_HUMAN	Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1	17	790	2.0E-103
sp\|Q5R434\|TSR1_PONAB	Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1 PE=2 SV=1	9	790	2.0E-102
sp\|Q9VP47\|TSR1_DROME	Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster GN=CG7338 PE=1 SV=1	5	818	2.0E-99
sp\|Q19329\|TSR1_CAEEL	Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis elegans GN=tag-151 PE=3 SV=1	18	789	1.0E-81
sp\|Q61WR2\|TSR1_CAEBR	Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis briggsae GN=tag-151 PE=3 SV=1	18	789	7.0E-81
sp\|Q54YA7\|TSR1_DICDI	Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium discoideum GN=tsr1 PE=3 SV=1	474	790	9.0E-48
sp\|O94653\|BMS1_SCHPO	Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bms1 PE=1 SV=2	547	788	6.0E-17
sp\|Q08965\|BMS1_YEAST	Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1	424	779	2.0E-15
sp\|Q14692\|BMS1_HUMAN	Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1	551	799	2.0E-13

[Show less]

GO

GO Term	Description	Terminal node
GO:0005634	nucleus	Yes
GO:0042254	ribosome biogenesis	Yes
GO:0044085	cellular component biogenesis	No
GO:0005575	cellular_component	No
GO:0043227	membrane-bounded organelle	No
GO:0043229	intracellular organelle	No
GO:0008150	biological_process	No
GO:0044464	cell part	No
GO:0043231	intracellular membrane-bounded organelle	No
GO:0043226	organelle	No
GO:0044424	intracellular part	No
GO:0022613	ribonucleoprotein complex biogenesis	No
GO:0071840	cellular component organization or biogenesis	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 44	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|10248 MPAAVASHSHRPTTKVSHKPFKSKAASKHELRDRAKGRVPNERGLRKTPHQQVMSKFDRRNQAKQARLSKHREHL RETSIFSGKDGAPRVVAVIPLCADADAKTAVRQLNGSLDIDAEVLDGSTRVSVARFKQKLQYLPLRRDLVACLDA ARVADFVVVILSANEDVDALGELILRSVESQGLSTLFTVVQNLDKVEPAKQRQAVLGSLKSFITHFHPEQDKVYS LDNRQECSNLMRSLCSTTPKGVRWRDERSWMLADDIEFASDSSQPTVITGVVRGRGLKADRLVQIGDWGACQIQK IVAAPLATHTKKEEDAVGEGEKNSILEVPSEDQDDLDELAPDDVVMGADDDGDGTMSATVSTKKGVLLDDHHYFS EEDEVAQSRIKKRLPKGTSSYQAAWYLDDVSDSGSDLEDVEMGDESKEEEKFGAEDGIEGYTPPEPTEAGPSEYP QSEMMGELDDAEDAQQLAQYRARRRDEAEEDKEFPDEIELHPNVLARERLARYRGLKSLRTSPWQEDEDRAHEPD EWRRLLQIPDYQASRSRCTREALVGGVQPGTRVQVYVKDVPAEAQKSWNPSRPVTLFSLLRHEQKKTVVNYVINL SNDQPKSVKSKEELIVQCGPRRMVINPIFSQSGSTPNDVHKYCRYLHPGQSAIASFMGPVTWGSVPVLFFKRAAA AEGTGGEEEQDSIGLSLVATGTALPPSTSRVVAKRVILTGHPYHIHKKIVTVRYMFFNRDDVEWFKALPLWTKRG RSGYIKEPLGTHGYFKATFDGRINPQDAVGVSLYKRMWPRSSRALGEPLLEDKEAGAQRQAAADVMIE*
Coding	>Hirsu2\|10248 ATGCCTGCCGCGGTCGCCTCCCATTCGCACCGTCCCACCACCAAGGTGTCGCACAAGCCATTCAAGTCCAAGGCG GCATCCAAGCACGAGCTCAGAGACCGAGCGAAGGGTCGCGTCCCCAACGAGCGTGGACTGAGAAAGACGCCGCAC CAGCAAGTCATGTCCAAGTTCGACCGCCGCAACCAGGCCAAGCAAGCCCGCTTGTCGAAGCACAGGGAGCATCTG AGAGAGACGTCCATCTTCTCGGGTAAAGATGGCGCGCCTCGCGTCGTCGCAGTCATTCCTCTCTGTGCGGATGCC GACGCAAAGACTGCCGTTCGACAACTAAACGGCAGTCTGGACATCGATGCCGAAGTCTTGGACGGCAGCACCCGA GTATCGGTCGCCCGCTTCAAGCAGAAACTGCAGTACTTGCCGCTCCGAAGAGACTTGGTTGCCTGCCTGGACGCC GCACGTGTCGCCGATTTCGTCGTCGTCATCCTGTCCGCCAACGAAGATGTCGATGCGCTGGGGGAGCTGATCCTC CGCAGCGTCGAGAGCCAGGGACTGTCAACCCTCTTCACCGTCGTGCAAAATCTCGACAAGGTTGAGCCGGCGAAG CAGAGACAGGCAGTCCTCGGCTCATTGAAGTCCTTCATCACCCACTTTCATCCGGAGCAGGACAAGGTGTACAGC TTGGACAACCGTCAGGAATGCTCCAATTTGATGCGCTCTCTCTGCAGTACCACTCCCAAGGGTGTTCGATGGAGG GATGAAAGGAGCTGGATGTTAGCCGACGACATCGAGTTCGCCAGCGACAGTTCTCAGCCCACCGTCATTACCGGA GTGGTTCGGGGTCGTGGGTTGAAAGCCGATCGTTTGGTCCAAATCGGCGACTGGGGTGCCTGTCAGATCCAGAAG ATTGTGGCCGCCCCGCTCGCCACGCACACGAAGAAGGAAGAAGACGCCGTGGGCGAAGGCGAGAAAAATAGCATC CTAGAGGTCCCGTCCGAGGACCAAGACGATTTAGATGAGCTTGCGCCTGACGACGTCGTCATGGGTGCTGACGAC GACGGCGATGGTACCATGTCGGCTACCGTCTCGACGAAGAAGGGCGTCCTTCTCGATGATCATCATTATTTCTCC GAGGAGGATGAGGTGGCGCAGAGCAGAATCAAGAAGCGTTTGCCCAAGGGTACGTCGAGCTACCAGGCGGCTTGG TACCTCGATGACGTGTCGGACTCGGGGTCCGATCTCGAGGATGTCGAGATGGGCGACGAGAGTAAGGAGGAGGAG AAGTTTGGCGCCGAAGACGGCATCGAGGGCTATACTCCGCCCGAGCCGACGGAGGCCGGCCCGTCCGAATACCCC CAATCCGAAATGATGGGGGAACTGGACGATGCAGAGGACGCTCAGCAGCTTGCCCAGTATCGCGCCCGGAGGCGG GACGAGGCTGAGGAGGACAAGGAGTTCCCCGACGAAATCGAGCTGCACCCCAACGTCCTGGCGCGGGAGAGACTG GCCCGATACCGAGGCCTGAAGAGCCTGCGGACCAGCCCGTGGCAAGAAGACGAGGATCGGGCACACGAGCCGGAC GAGTGGAGACGACTTCTCCAGATCCCCGACTACCAGGCATCCCGCTCACGCTGCACGCGGGAGGCCCTCGTCGGG GGCGTACAGCCAGGCACGCGGGTCCAGGTATACGTCAAGGACGTGCCGGCCGAGGCGCAGAAGTCGTGGAATCCG AGCCGTCCCGTCACCCTGTTTTCTCTCCTCCGACACGAGCAGAAGAAGACGGTGGTCAACTACGTCATCAACCTT TCGAACGATCAACCGAAGTCGGTCAAGTCGAAGGAGGAACTCATCGTCCAGTGCGGACCGCGGCGGATGGTCATC AATCCCATCTTCTCGCAGTCCGGCTCGACGCCAAACGACGTGCACAAGTACTGCCGCTATCTCCACCCCGGGCAG TCGGCGATTGCGAGCTTCATGGGCCCCGTGACCTGGGGCTCGGTGCCCGTCTTGTTCTTCAAGAGAGCGGCTGCG GCCGAGGGCACGGGGGGAGAGGAAGAGCAGGACAGCATCGGCCTGTCGCTCGTCGCAACGGGAACGGCACTGCCG CCGTCGACGTCGAGGGTGGTGGCCAAGAGGGTGATCCTGACGGGGCACCCGTACCACATTCACAAGAAGATCGTG ACGGTGCGATACATGTTCTTCAACCGCGACGACGTGGAGTGGTTCAAGGCGCTGCCGCTGTGGACCAAGAGGGGC CGGAGCGGATATATCAAGGAGCCGCTGGGGACGCACGGCTACTTCAAGGCGACCTTTGACGGGCGCATCAACCCC CAAGACGCCGTCGGCGTGAGCCTGTACAAGAGGATGTGGCCGCGCAGCTCGAGGGCCCTGGGGGAGCCTTTGCTG GAGGATAAGGAGGCGGGCGCTCAACGGCAGGCAGCGGCGGACGTCATGATAGAATGA
Transcript	>Hirsu2\|10248 ATGCCTGCCGCGGTCGCCTCCCATTCGCACCGTCCCACCACCAAGGTGTCGCACAAGCCATTCAAGTCCAAGGCG GCATCCAAGCACGAGCTCAGAGACCGAGCGAAGGGTCGCGTCCCCAACGAGCGTGGACTGAGAAAGACGCCGCAC CAGCAAGTCATGTCCAAGTTCGACCGCCGCAACCAGGCCAAGCAAGCCCGCTTGTCGAAGCACAGGGAGCATCTG AGAGAGACGTCCATCTTCTCGGGTAAAGATGGCGCGCCTCGCGTCGTCGCAGTCATTCCTCTCTGTGCGGATGCC GACGCAAAGACTGCCGTTCGACAACTAAACGGCAGTCTGGACATCGATGCCGAAGTCTTGGACGGCAGCACCCGA GTATCGGTCGCCCGCTTCAAGCAGAAACTGCAGTACTTGCCGCTCCGAAGAGACTTGGTTGCCTGCCTGGACGCC GCACGTGTCGCCGATTTCGTCGTCGTCATCCTGTCCGCCAACGAAGATGTCGATGCGCTGGGGGAGCTGATCCTC CGCAGCGTCGAGAGCCAGGGACTGTCAACCCTCTTCACCGTCGTGCAAAATCTCGACAAGGTTGAGCCGGCGAAG CAGAGACAGGCAGTCCTCGGCTCATTGAAGTCCTTCATCACCCACTTTCATCCGGAGCAGGACAAGGTGTACAGC TTGGACAACCGTCAGGAATGCTCCAATTTGATGCGCTCTCTCTGCAGTACCACTCCCAAGGGTGTTCGATGGAGG GATGAAAGGAGCTGGATGTTAGCCGACGACATCGAGTTCGCCAGCGACAGTTCTCAGCCCACCGTCATTACCGGA GTGGTTCGGGGTCGTGGGTTGAAAGCCGATCGTTTGGTCCAAATCGGCGACTGGGGTGCCTGTCAGATCCAGAAG ATTGTGGCCGCCCCGCTCGCCACGCACACGAAGAAGGAAGAAGACGCCGTGGGCGAAGGCGAGAAAAATAGCATC CTAGAGGTCCCGTCCGAGGACCAAGACGATTTAGATGAGCTTGCGCCTGACGACGTCGTCATGGGTGCTGACGAC GACGGCGATGGTACCATGTCGGCTACCGTCTCGACGAAGAAGGGCGTCCTTCTCGATGATCATCATTATTTCTCC GAGGAGGATGAGGTGGCGCAGAGCAGAATCAAGAAGCGTTTGCCCAAGGGTACGTCGAGCTACCAGGCGGCTTGG TACCTCGATGACGTGTCGGACTCGGGGTCCGATCTCGAGGATGTCGAGATGGGCGACGAGAGTAAGGAGGAGGAG AAGTTTGGCGCCGAAGACGGCATCGAGGGCTATACTCCGCCCGAGCCGACGGAGGCCGGCCCGTCCGAATACCCC CAATCCGAAATGATGGGGGAACTGGACGATGCAGAGGACGCTCAGCAGCTTGCCCAGTATCGCGCCCGGAGGCGG GACGAGGCTGAGGAGGACAAGGAGTTCCCCGACGAAATCGAGCTGCACCCCAACGTCCTGGCGCGGGAGAGACTG GCCCGATACCGAGGCCTGAAGAGCCTGCGGACCAGCCCGTGGCAAGAAGACGAGGATCGGGCACACGAGCCGGAC GAGTGGAGACGACTTCTCCAGATCCCCGACTACCAGGCATCCCGCTCACGCTGCACGCGGGAGGCCCTCGTCGGG GGCGTACAGCCAGGCACGCGGGTCCAGGTATACGTCAAGGACGTGCCGGCCGAGGCGCAGAAGTCGTGGAATCCG AGCCGTCCCGTCACCCTGTTTTCTCTCCTCCGACACGAGCAGAAGAAGACGGTGGTCAACTACGTCATCAACCTT TCGAACGATCAACCGAAGTCGGTCAAGTCGAAGGAGGAACTCATCGTCCAGTGCGGACCGCGGCGGATGGTCATC AATCCCATCTTCTCGCAGTCCGGCTCGACGCCAAACGACGTGCACAAGTACTGCCGCTATCTCCACCCCGGGCAG TCGGCGATTGCGAGCTTCATGGGCCCCGTGACCTGGGGCTCGGTGCCCGTCTTGTTCTTCAAGAGAGCGGCTGCG GCCGAGGGCACGGGGGGAGAGGAAGAGCAGGACAGCATCGGCCTGTCGCTCGTCGCAACGGGAACGGCACTGCCG CCGTCGACGTCGAGGGTGGTGGCCAAGAGGGTGATCCTGACGGGGCACCCGTACCACATTCACAAGAAGATCGTG ACGGTGCGATACATGTTCTTCAACCGCGACGACGTGGAGTGGTTCAAGGCGCTGCCGCTGTGGACCAAGAGGGGC CGGAGCGGATATATCAAGGAGCCGCTGGGGACGCACGGCTACTTCAAGGCGACCTTTGACGGGCGCATCAACCCC CAAGACGCCGTCGGCGTGAGCCTGTACAAGAGGATGTGGCCGCGCAGCTCGAGGGCCCTGGGGGAGCCTTTGCTG GAGGATAAGGAGGCGGGCGCTCAACGGCAGGCAGCGGCGGACGTCATGATAGAATGA
Gene	>Hirsu2\|10248 ATGCCTGCCGCGGTCGCCTCCCATTCGCACCGTCCCACCACCAAGGTGTCGCACAAGCCATTCAAGTCCAAGGCG GCATCCAAGCACGAGCTCAGAGACCGAGCGAAGGGTGCGGCAACGATTCAATTACTCTTCCGCCGACTTATCTTG GGTGTATCCTGAACTTTTGCTTACTCCTGCACAGGTCGCGTCCCCAACGAGCGTGGACTGAGAAAGACGCCGCAC CAGCAAGTCATGTCCAAGTTCGACCGCCGCAACCAGGCCAAGCAAGCCCGCTTGTCGAAGCACAGGGAGCATCTG AGAGAGACGTCCATCTTCTCGGGTAAAGATGGCGCGCCTCGCGTCGTCGCAGTCATTCCTCTCTGTGCGGATGCC GACGCAAAGACTGCCGTTCGACAACTAAACGGCAGTCTGGACATCGATGCCGAAGTCTTGGACGGCAGCACCCGA GTATCGGTCGCCCGCTTCAAGCAGAAACTGCAGTACTTGCCGCTCCGAAGAGACTTGGTTGCCTGCCTGGACGCC GCACGTGTCGCCGATTTCGTCGTCGTCATCCTGTCCGCCAACGAAGATGTCGATGCGCTGGGGGAGCTGATCCTC CGCAGCGTCGAGAGCCAGGGACTGTCAACCCTCTTCACCGTCGTGCAAAATCTCGACAAGGTTGAGCCGGCGAAG CAGAGACAGGCAGTCCTCGGCTCATTGAAGTCCTTCATCACCCACTTTCATCCGGAGCAGGACAAGGTGTACAGC TTGGACAACCGTCAGGAATGCTCCAATTTGATGCGCTCTCTCTGCAGTACCACTCCCAAGGGTGTTCGATGGAGG GATGAAAGGAGCTGGATGTTAGCCGACGACATCGAGTTCGCCAGCGACAGTTCTCAGCCCACCGTCATTACCGGA GTGGTTCGGGGTCGTGGGTTGAAAGCCGATCGTTTGGTCCAAATCGGCGACTGGGGTGCCTGTCAGATCCAGAAG ATTGTGGCCGCCCCGCTCGCCACGCACACGAAGAAGGAAGAAGACGCCGTGGGCGAAGGCGAGAAAAATAGCATC CTAGAGGTCCCGTCCGAGGACCAAGACGATTTAGATGAGCTTGCGCCTGACGACGTCGTCATGGGTGCTGACGAC GACGGCGATGGTACCATGTCGGCTACCGTCTCGACGAAGAAGGGCGTCCTTCTCGATGATCATCATTATTTCTCC GAGGAGGATGAGGTGGCGCAGAGCAGAATCAAGAAGCGTTTGCCCAAGGGTACGTCGAGCTACCAGGCGGCTTGG TACCTCGATGACGTGTCGGACTCGGGGTCCGATCTCGAGGATGTCGAGATGGGCGACGAGAGTAAGGAGGAGGAG AAGTTTGGCGCCGAAGACGGCATCGAGGGCTATACTCCGCCCGAGCCGACGGAGGCCGGCCCGTCCGAATACCCC CAATCCGAAATGATGGGGGAACTGGACGATGCAGAGGACGCTCAGCAGCTTGCCCAGTATCGCGCCCGGAGGCGG GACGAGGCTGAGGAGGACAAGGAGTTCCCCGACGAAATCGAGCTGCACCCCAACGTCCTGGCGCGGGAGAGACTG GCCCGATACCGAGGCCTGAAGAGCCTGCGGACCAGCCCGTGGCAAGAAGACGAGGATCGGGCACACGAGCCGGAC GAGTGGAGACGACTTCTCCAGATCCCCGACTACCAGGCATCCCGCTCACGCTGCACGCGGGAGGCCCTCGTCGGG GGCGTACAGCCAGGCACGCGGGTCCAGGTATACGTCAAGGACGTGCCGGCCGAGGCGCAGAAGTCGTGGAATCCG AGCCGTCCCGTCACCCTGTTTTCTCTCCTCCGACACGAGCAGAAGAAGACGGTGGTCAACTACGTCATCAACCTT TCGAACGATCAACCGAAGTCGGTCAAGTCGAAGGAGGAACTCATCGTCCAGTGCGGACCGCGGCGGATGGTCATC AATCCCATCTTCTCGCAGTCCGGCTCGACGCCAAACGACGTGCACAAGTACTGCCGCTATCTCCACCCCGGGCAG TCGGCGATTGCGAGCTTCATGGGCCCCGTGACCTGGGGCTCGGTGCCCGTCTTGTTCTTCAAGAGAGCGGCTGCG GCCGAGGGCACGGGGGGAGAGGAAGAGCAGGACAGCATCGGCCTGTCGCTCGTCGCAACGGGAACGGCACTGCCG CCGTCGACGTCGAGGGTGGTGGCCAAGAGGGTGATCCTGACGGGGCACCCGTACCACATTCACAAGAAGATCGTG ACGGTGCGATACATGTTCTTCAACCGCGACGACGTGGAGTGGTTCAAGGCGCTGCCGCTGTGGACCAAGAGGGGC CGGAGCGGATATATCAAGGAGCCGCTGGGGACGCACGGCTACTTCAAGGCGACCTTTGACGGGCGCATCAACCCC CAAGACGCCGTCGGCGTGAGCCTGTACAAGAGGATGTGGCCGCGCAGCTCGAGGGCCCTGGGGGAGCCTTTGCTG GAGGATAAGGAGGCGGGCGCTCAACGGCAGGCAGCGGCGGACGTCATGATAGAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail