Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|10248
Gene name
LocationContig_81:14551..17083
Strand+
Gene length (bp)2532
Transcript length (bp)2457
Coding sequence length (bp)2457
Protein length (aa) 819

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04950 RIBIOP_C 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 4.8E-112 488 789
PF08142 AARP2CN AARP2CN (NUC121) domain 3.3E-17 231 304

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O13956|TSR1_SCHPO Ribosome biogenesis protein tsr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsr1 PE=3 SV=1 7 789 0.0E+00
sp|Q07381|TSR1_YEAST Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1 5 792 2.0E-169
sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=1 SV=1 35 790 8.0E-107
sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1 1 790 3.0E-106
sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1 17 790 2.0E-103
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Swissprot ID Swissprot Description Start End E-value
sp|O13956|TSR1_SCHPO Ribosome biogenesis protein tsr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsr1 PE=3 SV=1 7 789 0.0E+00
sp|Q07381|TSR1_YEAST Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1 5 792 2.0E-169
sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=1 SV=1 35 790 8.0E-107
sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1 1 790 3.0E-106
sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1 17 790 2.0E-103
sp|Q5R434|TSR1_PONAB Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1 PE=2 SV=1 9 790 2.0E-102
sp|Q9VP47|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster GN=CG7338 PE=1 SV=1 5 818 2.0E-99
sp|Q19329|TSR1_CAEEL Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis elegans GN=tag-151 PE=3 SV=1 18 789 1.0E-81
sp|Q61WR2|TSR1_CAEBR Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis briggsae GN=tag-151 PE=3 SV=1 18 789 7.0E-81
sp|Q54YA7|TSR1_DICDI Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium discoideum GN=tsr1 PE=3 SV=1 474 790 9.0E-48
sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bms1 PE=1 SV=2 547 788 6.0E-17
sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1 424 779 2.0E-15
sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1 551 799 2.0E-13
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GO

GO Term Description Terminal node
GO:0005634 nucleus Yes
GO:0042254 ribosome biogenesis Yes
GO:0044085 cellular component biogenesis No
GO:0005575 cellular_component No
GO:0043227 membrane-bounded organelle No
GO:0043229 intracellular organelle No
GO:0008150 biological_process No
GO:0044464 cell part No
GO:0043231 intracellular membrane-bounded organelle No
GO:0043226 organelle No
GO:0044424 intracellular part No
GO:0022613 ribonucleoprotein complex biogenesis No
GO:0071840 cellular component organization or biogenesis No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 44 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|10248
MPAAVASHSHRPTTKVSHKPFKSKAASKHELRDRAKGRVPNERGLRKTPHQQVMSKFDRRNQAKQARLSKHREHL
RETSIFSGKDGAPRVVAVIPLCADADAKTAVRQLNGSLDIDAEVLDGSTRVSVARFKQKLQYLPLRRDLVACLDA
ARVADFVVVILSANEDVDALGELILRSVESQGLSTLFTVVQNLDKVEPAKQRQAVLGSLKSFITHFHPEQDKVYS
LDNRQECSNLMRSLCSTTPKGVRWRDERSWMLADDIEFASDSSQPTVITGVVRGRGLKADRLVQIGDWGACQIQK
IVAAPLATHTKKEEDAVGEGEKNSILEVPSEDQDDLDELAPDDVVMGADDDGDGTMSATVSTKKGVLLDDHHYFS
EEDEVAQSRIKKRLPKGTSSYQAAWYLDDVSDSGSDLEDVEMGDESKEEEKFGAEDGIEGYTPPEPTEAGPSEYP
QSEMMGELDDAEDAQQLAQYRARRRDEAEEDKEFPDEIELHPNVLARERLARYRGLKSLRTSPWQEDEDRAHEPD
EWRRLLQIPDYQASRSRCTREALVGGVQPGTRVQVYVKDVPAEAQKSWNPSRPVTLFSLLRHEQKKTVVNYVINL
SNDQPKSVKSKEELIVQCGPRRMVINPIFSQSGSTPNDVHKYCRYLHPGQSAIASFMGPVTWGSVPVLFFKRAAA
AEGTGGEEEQDSIGLSLVATGTALPPSTSRVVAKRVILTGHPYHIHKKIVTVRYMFFNRDDVEWFKALPLWTKRG
RSGYIKEPLGTHGYFKATFDGRINPQDAVGVSLYKRMWPRSSRALGEPLLEDKEAGAQRQAAADVMIE*
Coding >Hirsu2|10248
ATGCCTGCCGCGGTCGCCTCCCATTCGCACCGTCCCACCACCAAGGTGTCGCACAAGCCATTCAAGTCCAAGGCG
GCATCCAAGCACGAGCTCAGAGACCGAGCGAAGGGTCGCGTCCCCAACGAGCGTGGACTGAGAAAGACGCCGCAC
CAGCAAGTCATGTCCAAGTTCGACCGCCGCAACCAGGCCAAGCAAGCCCGCTTGTCGAAGCACAGGGAGCATCTG
AGAGAGACGTCCATCTTCTCGGGTAAAGATGGCGCGCCTCGCGTCGTCGCAGTCATTCCTCTCTGTGCGGATGCC
GACGCAAAGACTGCCGTTCGACAACTAAACGGCAGTCTGGACATCGATGCCGAAGTCTTGGACGGCAGCACCCGA
GTATCGGTCGCCCGCTTCAAGCAGAAACTGCAGTACTTGCCGCTCCGAAGAGACTTGGTTGCCTGCCTGGACGCC
GCACGTGTCGCCGATTTCGTCGTCGTCATCCTGTCCGCCAACGAAGATGTCGATGCGCTGGGGGAGCTGATCCTC
CGCAGCGTCGAGAGCCAGGGACTGTCAACCCTCTTCACCGTCGTGCAAAATCTCGACAAGGTTGAGCCGGCGAAG
CAGAGACAGGCAGTCCTCGGCTCATTGAAGTCCTTCATCACCCACTTTCATCCGGAGCAGGACAAGGTGTACAGC
TTGGACAACCGTCAGGAATGCTCCAATTTGATGCGCTCTCTCTGCAGTACCACTCCCAAGGGTGTTCGATGGAGG
GATGAAAGGAGCTGGATGTTAGCCGACGACATCGAGTTCGCCAGCGACAGTTCTCAGCCCACCGTCATTACCGGA
GTGGTTCGGGGTCGTGGGTTGAAAGCCGATCGTTTGGTCCAAATCGGCGACTGGGGTGCCTGTCAGATCCAGAAG
ATTGTGGCCGCCCCGCTCGCCACGCACACGAAGAAGGAAGAAGACGCCGTGGGCGAAGGCGAGAAAAATAGCATC
CTAGAGGTCCCGTCCGAGGACCAAGACGATTTAGATGAGCTTGCGCCTGACGACGTCGTCATGGGTGCTGACGAC
GACGGCGATGGTACCATGTCGGCTACCGTCTCGACGAAGAAGGGCGTCCTTCTCGATGATCATCATTATTTCTCC
GAGGAGGATGAGGTGGCGCAGAGCAGAATCAAGAAGCGTTTGCCCAAGGGTACGTCGAGCTACCAGGCGGCTTGG
TACCTCGATGACGTGTCGGACTCGGGGTCCGATCTCGAGGATGTCGAGATGGGCGACGAGAGTAAGGAGGAGGAG
AAGTTTGGCGCCGAAGACGGCATCGAGGGCTATACTCCGCCCGAGCCGACGGAGGCCGGCCCGTCCGAATACCCC
CAATCCGAAATGATGGGGGAACTGGACGATGCAGAGGACGCTCAGCAGCTTGCCCAGTATCGCGCCCGGAGGCGG
GACGAGGCTGAGGAGGACAAGGAGTTCCCCGACGAAATCGAGCTGCACCCCAACGTCCTGGCGCGGGAGAGACTG
GCCCGATACCGAGGCCTGAAGAGCCTGCGGACCAGCCCGTGGCAAGAAGACGAGGATCGGGCACACGAGCCGGAC
GAGTGGAGACGACTTCTCCAGATCCCCGACTACCAGGCATCCCGCTCACGCTGCACGCGGGAGGCCCTCGTCGGG
GGCGTACAGCCAGGCACGCGGGTCCAGGTATACGTCAAGGACGTGCCGGCCGAGGCGCAGAAGTCGTGGAATCCG
AGCCGTCCCGTCACCCTGTTTTCTCTCCTCCGACACGAGCAGAAGAAGACGGTGGTCAACTACGTCATCAACCTT
TCGAACGATCAACCGAAGTCGGTCAAGTCGAAGGAGGAACTCATCGTCCAGTGCGGACCGCGGCGGATGGTCATC
AATCCCATCTTCTCGCAGTCCGGCTCGACGCCAAACGACGTGCACAAGTACTGCCGCTATCTCCACCCCGGGCAG
TCGGCGATTGCGAGCTTCATGGGCCCCGTGACCTGGGGCTCGGTGCCCGTCTTGTTCTTCAAGAGAGCGGCTGCG
GCCGAGGGCACGGGGGGAGAGGAAGAGCAGGACAGCATCGGCCTGTCGCTCGTCGCAACGGGAACGGCACTGCCG
CCGTCGACGTCGAGGGTGGTGGCCAAGAGGGTGATCCTGACGGGGCACCCGTACCACATTCACAAGAAGATCGTG
ACGGTGCGATACATGTTCTTCAACCGCGACGACGTGGAGTGGTTCAAGGCGCTGCCGCTGTGGACCAAGAGGGGC
CGGAGCGGATATATCAAGGAGCCGCTGGGGACGCACGGCTACTTCAAGGCGACCTTTGACGGGCGCATCAACCCC
CAAGACGCCGTCGGCGTGAGCCTGTACAAGAGGATGTGGCCGCGCAGCTCGAGGGCCCTGGGGGAGCCTTTGCTG
GAGGATAAGGAGGCGGGCGCTCAACGGCAGGCAGCGGCGGACGTCATGATAGAATGA
Transcript >Hirsu2|10248
ATGCCTGCCGCGGTCGCCTCCCATTCGCACCGTCCCACCACCAAGGTGTCGCACAAGCCATTCAAGTCCAAGGCG
GCATCCAAGCACGAGCTCAGAGACCGAGCGAAGGGTCGCGTCCCCAACGAGCGTGGACTGAGAAAGACGCCGCAC
CAGCAAGTCATGTCCAAGTTCGACCGCCGCAACCAGGCCAAGCAAGCCCGCTTGTCGAAGCACAGGGAGCATCTG
AGAGAGACGTCCATCTTCTCGGGTAAAGATGGCGCGCCTCGCGTCGTCGCAGTCATTCCTCTCTGTGCGGATGCC
GACGCAAAGACTGCCGTTCGACAACTAAACGGCAGTCTGGACATCGATGCCGAAGTCTTGGACGGCAGCACCCGA
GTATCGGTCGCCCGCTTCAAGCAGAAACTGCAGTACTTGCCGCTCCGAAGAGACTTGGTTGCCTGCCTGGACGCC
GCACGTGTCGCCGATTTCGTCGTCGTCATCCTGTCCGCCAACGAAGATGTCGATGCGCTGGGGGAGCTGATCCTC
CGCAGCGTCGAGAGCCAGGGACTGTCAACCCTCTTCACCGTCGTGCAAAATCTCGACAAGGTTGAGCCGGCGAAG
CAGAGACAGGCAGTCCTCGGCTCATTGAAGTCCTTCATCACCCACTTTCATCCGGAGCAGGACAAGGTGTACAGC
TTGGACAACCGTCAGGAATGCTCCAATTTGATGCGCTCTCTCTGCAGTACCACTCCCAAGGGTGTTCGATGGAGG
GATGAAAGGAGCTGGATGTTAGCCGACGACATCGAGTTCGCCAGCGACAGTTCTCAGCCCACCGTCATTACCGGA
GTGGTTCGGGGTCGTGGGTTGAAAGCCGATCGTTTGGTCCAAATCGGCGACTGGGGTGCCTGTCAGATCCAGAAG
ATTGTGGCCGCCCCGCTCGCCACGCACACGAAGAAGGAAGAAGACGCCGTGGGCGAAGGCGAGAAAAATAGCATC
CTAGAGGTCCCGTCCGAGGACCAAGACGATTTAGATGAGCTTGCGCCTGACGACGTCGTCATGGGTGCTGACGAC
GACGGCGATGGTACCATGTCGGCTACCGTCTCGACGAAGAAGGGCGTCCTTCTCGATGATCATCATTATTTCTCC
GAGGAGGATGAGGTGGCGCAGAGCAGAATCAAGAAGCGTTTGCCCAAGGGTACGTCGAGCTACCAGGCGGCTTGG
TACCTCGATGACGTGTCGGACTCGGGGTCCGATCTCGAGGATGTCGAGATGGGCGACGAGAGTAAGGAGGAGGAG
AAGTTTGGCGCCGAAGACGGCATCGAGGGCTATACTCCGCCCGAGCCGACGGAGGCCGGCCCGTCCGAATACCCC
CAATCCGAAATGATGGGGGAACTGGACGATGCAGAGGACGCTCAGCAGCTTGCCCAGTATCGCGCCCGGAGGCGG
GACGAGGCTGAGGAGGACAAGGAGTTCCCCGACGAAATCGAGCTGCACCCCAACGTCCTGGCGCGGGAGAGACTG
GCCCGATACCGAGGCCTGAAGAGCCTGCGGACCAGCCCGTGGCAAGAAGACGAGGATCGGGCACACGAGCCGGAC
GAGTGGAGACGACTTCTCCAGATCCCCGACTACCAGGCATCCCGCTCACGCTGCACGCGGGAGGCCCTCGTCGGG
GGCGTACAGCCAGGCACGCGGGTCCAGGTATACGTCAAGGACGTGCCGGCCGAGGCGCAGAAGTCGTGGAATCCG
AGCCGTCCCGTCACCCTGTTTTCTCTCCTCCGACACGAGCAGAAGAAGACGGTGGTCAACTACGTCATCAACCTT
TCGAACGATCAACCGAAGTCGGTCAAGTCGAAGGAGGAACTCATCGTCCAGTGCGGACCGCGGCGGATGGTCATC
AATCCCATCTTCTCGCAGTCCGGCTCGACGCCAAACGACGTGCACAAGTACTGCCGCTATCTCCACCCCGGGCAG
TCGGCGATTGCGAGCTTCATGGGCCCCGTGACCTGGGGCTCGGTGCCCGTCTTGTTCTTCAAGAGAGCGGCTGCG
GCCGAGGGCACGGGGGGAGAGGAAGAGCAGGACAGCATCGGCCTGTCGCTCGTCGCAACGGGAACGGCACTGCCG
CCGTCGACGTCGAGGGTGGTGGCCAAGAGGGTGATCCTGACGGGGCACCCGTACCACATTCACAAGAAGATCGTG
ACGGTGCGATACATGTTCTTCAACCGCGACGACGTGGAGTGGTTCAAGGCGCTGCCGCTGTGGACCAAGAGGGGC
CGGAGCGGATATATCAAGGAGCCGCTGGGGACGCACGGCTACTTCAAGGCGACCTTTGACGGGCGCATCAACCCC
CAAGACGCCGTCGGCGTGAGCCTGTACAAGAGGATGTGGCCGCGCAGCTCGAGGGCCCTGGGGGAGCCTTTGCTG
GAGGATAAGGAGGCGGGCGCTCAACGGCAGGCAGCGGCGGACGTCATGATAGAATGA
Gene >Hirsu2|10248
ATGCCTGCCGCGGTCGCCTCCCATTCGCACCGTCCCACCACCAAGGTGTCGCACAAGCCATTCAAGTCCAAGGCG
GCATCCAAGCACGAGCTCAGAGACCGAGCGAAGGGTGCGGCAACGATTCAATTACTCTTCCGCCGACTTATCTTG
GGTGTATCCTGAACTTTTGCTTACTCCTGCACAGGTCGCGTCCCCAACGAGCGTGGACTGAGAAAGACGCCGCAC
CAGCAAGTCATGTCCAAGTTCGACCGCCGCAACCAGGCCAAGCAAGCCCGCTTGTCGAAGCACAGGGAGCATCTG
AGAGAGACGTCCATCTTCTCGGGTAAAGATGGCGCGCCTCGCGTCGTCGCAGTCATTCCTCTCTGTGCGGATGCC
GACGCAAAGACTGCCGTTCGACAACTAAACGGCAGTCTGGACATCGATGCCGAAGTCTTGGACGGCAGCACCCGA
GTATCGGTCGCCCGCTTCAAGCAGAAACTGCAGTACTTGCCGCTCCGAAGAGACTTGGTTGCCTGCCTGGACGCC
GCACGTGTCGCCGATTTCGTCGTCGTCATCCTGTCCGCCAACGAAGATGTCGATGCGCTGGGGGAGCTGATCCTC
CGCAGCGTCGAGAGCCAGGGACTGTCAACCCTCTTCACCGTCGTGCAAAATCTCGACAAGGTTGAGCCGGCGAAG
CAGAGACAGGCAGTCCTCGGCTCATTGAAGTCCTTCATCACCCACTTTCATCCGGAGCAGGACAAGGTGTACAGC
TTGGACAACCGTCAGGAATGCTCCAATTTGATGCGCTCTCTCTGCAGTACCACTCCCAAGGGTGTTCGATGGAGG
GATGAAAGGAGCTGGATGTTAGCCGACGACATCGAGTTCGCCAGCGACAGTTCTCAGCCCACCGTCATTACCGGA
GTGGTTCGGGGTCGTGGGTTGAAAGCCGATCGTTTGGTCCAAATCGGCGACTGGGGTGCCTGTCAGATCCAGAAG
ATTGTGGCCGCCCCGCTCGCCACGCACACGAAGAAGGAAGAAGACGCCGTGGGCGAAGGCGAGAAAAATAGCATC
CTAGAGGTCCCGTCCGAGGACCAAGACGATTTAGATGAGCTTGCGCCTGACGACGTCGTCATGGGTGCTGACGAC
GACGGCGATGGTACCATGTCGGCTACCGTCTCGACGAAGAAGGGCGTCCTTCTCGATGATCATCATTATTTCTCC
GAGGAGGATGAGGTGGCGCAGAGCAGAATCAAGAAGCGTTTGCCCAAGGGTACGTCGAGCTACCAGGCGGCTTGG
TACCTCGATGACGTGTCGGACTCGGGGTCCGATCTCGAGGATGTCGAGATGGGCGACGAGAGTAAGGAGGAGGAG
AAGTTTGGCGCCGAAGACGGCATCGAGGGCTATACTCCGCCCGAGCCGACGGAGGCCGGCCCGTCCGAATACCCC
CAATCCGAAATGATGGGGGAACTGGACGATGCAGAGGACGCTCAGCAGCTTGCCCAGTATCGCGCCCGGAGGCGG
GACGAGGCTGAGGAGGACAAGGAGTTCCCCGACGAAATCGAGCTGCACCCCAACGTCCTGGCGCGGGAGAGACTG
GCCCGATACCGAGGCCTGAAGAGCCTGCGGACCAGCCCGTGGCAAGAAGACGAGGATCGGGCACACGAGCCGGAC
GAGTGGAGACGACTTCTCCAGATCCCCGACTACCAGGCATCCCGCTCACGCTGCACGCGGGAGGCCCTCGTCGGG
GGCGTACAGCCAGGCACGCGGGTCCAGGTATACGTCAAGGACGTGCCGGCCGAGGCGCAGAAGTCGTGGAATCCG
AGCCGTCCCGTCACCCTGTTTTCTCTCCTCCGACACGAGCAGAAGAAGACGGTGGTCAACTACGTCATCAACCTT
TCGAACGATCAACCGAAGTCGGTCAAGTCGAAGGAGGAACTCATCGTCCAGTGCGGACCGCGGCGGATGGTCATC
AATCCCATCTTCTCGCAGTCCGGCTCGACGCCAAACGACGTGCACAAGTACTGCCGCTATCTCCACCCCGGGCAG
TCGGCGATTGCGAGCTTCATGGGCCCCGTGACCTGGGGCTCGGTGCCCGTCTTGTTCTTCAAGAGAGCGGCTGCG
GCCGAGGGCACGGGGGGAGAGGAAGAGCAGGACAGCATCGGCCTGTCGCTCGTCGCAACGGGAACGGCACTGCCG
CCGTCGACGTCGAGGGTGGTGGCCAAGAGGGTGATCCTGACGGGGCACCCGTACCACATTCACAAGAAGATCGTG
ACGGTGCGATACATGTTCTTCAACCGCGACGACGTGGAGTGGTTCAAGGCGCTGCCGCTGTGGACCAAGAGGGGC
CGGAGCGGATATATCAAGGAGCCGCTGGGGACGCACGGCTACTTCAAGGCGACCTTTGACGGGCGCATCAACCCC
CAAGACGCCGTCGGCGTGAGCCTGTACAAGAGGATGTGGCCGCGCAGCTCGAGGGCCCTGGGGGAGCCTTTGCTG
GAGGATAAGGAGGCGGGCGCTCAACGGCAGGCAGCGGCGGACGTCATGATAGAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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