© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10235 |
| Gene name | |
| Location | Contig_808:3628..4660 |
| Strand | - |
| Gene length (bp) | 1032 |
| Transcript length (bp) | 849 |
| Coding sequence length (bp) | 849 |
| Protein length (aa) | 283 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Signal peptide | 0.4952 | 0.4345 | 0.4823 | 0.2236 | 0.2945 | 0.0473 | 0.2617 | 0.2462 | 0.3947 | 0.0548 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 16 | 0.99944 |
| Orthofinder run ID | 4 |
| Orthogroup | 8430 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|10235 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10235 MPGLALLLSALLLCAGTREAPRPSCSTIRARGPCCWKSPLAARLCWERAGDCAGTSSQVMPADAAIPPAAGRKLP PGKEPGKPRVVHGSRQAEQRPARQQGIARGKAVRCSASYRSHTACRPAEPPGRLARCSSPPPAGRPARDLPLERV AVGSSETRALLKDKDGNRPHQLRQSTIHRQARNSTPNGPSPARWMIQSVDSTACPGHPSESGRAFGRLAENAHGS IRPTSPLFSSLFFSLSPLLVLSPSLSLSATVCPQGIPRLLVTAAPDPALLLQASSCC* |
| Coding | >Hirsu2|10235 ATGCCCGGCCTTGCTCTGCTATTGTCTGCTCTTCTGCTATGCGCCGGCACCCGCGAAGCACCACGACCTTCATGC TCGACGATTCGTGCGCGCGGGCCCTGCTGCTGGAAGAGCCCGCTGGCGGCGAGGCTGTGCTGGGAACGAGCTGGC GACTGCGCAGGCACTTCCAGTCAGGTGATGCCGGCAGATGCTGCCATCCCGCCTGCTGCTGGACGTAAGCTCCCG CCCGGGAAGGAGCCCGGCAAACCTCGTGTCGTCCACGGCAGCAGGCAGGCAGAGCAACGCCCCGCGAGGCAGCAG GGCATAGCCAGAGGCAAGGCTGTGCGCTGTTCGGCCTCGTATCGCTCTCACACAGCCTGTCGCCCAGCCGAGCCT CCGGGCCGCCTTGCTCGCTGCTCCTCACCTCCACCCGCCGGCCGGCCGGCCCGCGATCTGCCTCTCGAGAGAGTC GCGGTCGGCTCCAGCGAGACGCGCGCACTATTGAAAGACAAAGACGGCAACAGGCCACACCAGCTTCGGCAGTCG ACGATTCATCGACAAGCGCGCAATTCGACGCCCAATGGCCCCTCCCCTGCCAGATGGATGATCCAATCCGTCGAC TCGACGGCCTGCCCGGGCCACCCCAGCGAGTCCGGAAGAGCCTTTGGCCGCTTGGCAGAAAATGCTCACGGCTCC ATTCGCCCCACCTCTCCTCTTTTCTCTTCTCTTTTCTTCTCCCTCTCCCCTCTCCTCGTGCTCTCTCCATCGCTG TCCCTCTCTGCCACTGTCTGTCCTCAGGGGATACCCCGGCTTCTCGTGACGGCGGCTCCTGATCCGGCGCTACTG CTCCAAGCCTCCTCCTGCTGCTAA |
| Transcript | >Hirsu2|10235 ATGCCCGGCCTTGCTCTGCTATTGTCTGCTCTTCTGCTATGCGCCGGCACCCGCGAAGCACCACGACCTTCATGC TCGACGATTCGTGCGCGCGGGCCCTGCTGCTGGAAGAGCCCGCTGGCGGCGAGGCTGTGCTGGGAACGAGCTGGC GACTGCGCAGGCACTTCCAGTCAGGTGATGCCGGCAGATGCTGCCATCCCGCCTGCTGCTGGACGTAAGCTCCCG CCCGGGAAGGAGCCCGGCAAACCTCGTGTCGTCCACGGCAGCAGGCAGGCAGAGCAACGCCCCGCGAGGCAGCAG GGCATAGCCAGAGGCAAGGCTGTGCGCTGTTCGGCCTCGTATCGCTCTCACACAGCCTGTCGCCCAGCCGAGCCT CCGGGCCGCCTTGCTCGCTGCTCCTCACCTCCACCCGCCGGCCGGCCGGCCCGCGATCTGCCTCTCGAGAGAGTC GCGGTCGGCTCCAGCGAGACGCGCGCACTATTGAAAGACAAAGACGGCAACAGGCCACACCAGCTTCGGCAGTCG ACGATTCATCGACAAGCGCGCAATTCGACGCCCAATGGCCCCTCCCCTGCCAGATGGATGATCCAATCCGTCGAC TCGACGGCCTGCCCGGGCCACCCCAGCGAGTCCGGAAGAGCCTTTGGCCGCTTGGCAGAAAATGCTCACGGCTCC ATTCGCCCCACCTCTCCTCTTTTCTCTTCTCTTTTCTTCTCCCTCTCCCCTCTCCTCGTGCTCTCTCCATCGCTG TCCCTCTCTGCCACTGTCTGTCCTCAGGGGATACCCCGGCTTCTCGTGACGGCGGCTCCTGATCCGGCGCTACTG CTCCAAGCCTCCTCCTGCTGCTAA |
| Gene | >Hirsu2|10235 ATGCCCGGCCTTGCTCTGCTATTGTCTGCTCTTCTGCTATGCGCCGGCACCCGCGAAGCACCACGACCTTCATGC TCGACGATTCGTGCGCGCGGGCCCTGCTGCTGGAAGAGCCCGCTGGCGGCGAGGCTGTGCTGGGAACGAGCTGGC GACTGCGCAGGCACTTCCAGTCAGGTGATGCCGGCAGATGCTGCCATCCCGCCTGCTGCTGGACGTAAGCTCCCG CCCGGGAAGGAGCCCGGCAAACCTCGTGTCGTCCACGGCAGCAGGCAGGTACGCTGGAGTCCCCCCCTGCCCTCT CGTCAATGCAGACCGATGCTTTTTTGCTGCCTGCCACGCGTTCTAGACGCGCATCGAGGGGCAGGTCATGTGATG GCCGAGGCATGAATCCCAGCTCGCCTCCTTTTTTTTTTCTTGATTCTTCTTCTCCGCCGGCTTTTCCTTTTTGTG GGCAAGGCAGAGCAACGCCCCGCGAGGCAGCAGGGCATAGCCAGAGGCAAGGCTGTGCGCTGTTCGGCCTCGTAT CGCTCTCACACAGCCTGTCGCCCAGCCGAGCCTCCGGGCCGCCTTGCTCGCTGCTCCTCACCTCCACCCGCCGGC CGGCCGGCCCGCGATCTGCCTCTCGAGAGAGTCGCGGTCGGCTCCAGCGAGACGCGCGCACTATTGAAAGACAAA GACGGCAACAGGCCACACCAGCTTCGGCAGTCGACGATTCATCGACAAGCGCGCAATTCGACGCCCAATGGCCCC TCCCCTGCCAGATGGATGATCCAATCCGTCGACTCGACGGCCTGCCCGGGCCACCCCAGCGAGTCCGGAAGAGCC TTTGGCCGCTTGGCAGAAAATGCTCACGGCTCCATTCGCCCCACCTCTCCTCTTTTCTCTTCTCTTTTCTTCTCC CTCTCCCCTCTCCTCGTGCTCTCTCCATCGCTGTCCCTCTCTGCCACTGTCTGTCCTCAGGGGATACCCCGGCTT CTCGTGACGGCGGCTCCTGATCCGGCGCTACTGCTCCAAGCCTCCTCCTGCTGCTAA |