Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|10231
Gene name
LocationContig_807:55..331
Strand+
Gene length (bp)276
Transcript length (bp)276
Coding sequence length (bp)276
Protein length (aa) 92

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q03322|TLG1_YEAST T-SNARE affecting a late Golgi compartment protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG1 PE=1 SV=1 1 75 2.0E-10
sp|Q9HGN3|TLG1_SCHPO t-SNARE affecting a late Golgi compartment protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tlg1 PE=3 SV=1 6 73 5.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 42 0.45

Transmembrane Domains

Domain # Start End Length
1 68 90 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|10231
MMREQDQHLDGVFHTVGNLRRQADDMGRELEEQHEMLELVDRTADRVGSGLSNGVQKLRHIVRRNEDRWSGYCIG
LLIFVLVLLLFLLLIL*
Coding >Hirsu2|10231
ATGATGCGCGAGCAGGACCAGCACCTCGACGGCGTCTTCCATACCGTCGGCAACCTGCGCCGCCAGGCCGACGAC
ATGGGCCGCGAGCTCGAGGAGCAGCACGAGATGCTCGAGCTCGTCGACCGGACCGCCGACCGCGTCGGCTCCGGC
CTGAGCAACGGCGTGCAGAAGCTGCGCCACATCGTGCGCCGCAACGAGGACCGCTGGAGCGGCTACTGCATCGGC
CTGCTCATCTTCGTCCTCGTCCTGCTGCTGTTCCTCCTTCTGATATTATAG
Transcript >Hirsu2|10231
ATGATGCGCGAGCAGGACCAGCACCTCGACGGCGTCTTCCATACCGTCGGCAACCTGCGCCGCCAGGCCGACGAC
ATGGGCCGCGAGCTCGAGGAGCAGCACGAGATGCTCGAGCTCGTCGACCGGACCGCCGACCGCGTCGGCTCCGGC
CTGAGCAACGGCGTGCAGAAGCTGCGCCACATCGTGCGCCGCAACGAGGACCGCTGGAGCGGCTACTGCATCGGC
CTGCTCATCTTCGTCCTCGTCCTGCTGCTGTTCCTCCTTCTGATATTATAG
Gene >Hirsu2|10231
ATGATGCGCGAGCAGGACCAGCACCTCGACGGCGTCTTCCATACCGTCGGCAACCTGCGCCGCCAGGCCGACGAC
ATGGGCCGCGAGCTCGAGGAGCAGCACGAGATGCTCGAGCTCGTCGACCGGACCGCCGACCGCGTCGGCTCCGGC
CTGAGCAACGGCGTGCAGAAGCTGCGCCACATCGTGCGCCGCAACGAGGACCGCTGGAGCGGCTACTGCATCGGC
CTGCTCATCTTCGTCCTCGTCCTGCTGCTGTTCCTCCTTCTGATATTATAG

© 2020 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail