Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1023
Gene name
LocationContig_121:34448..34808
Strand-
Gene length (bp)360
Transcript length (bp)360
Coding sequence length (bp)360
Protein length (aa) 120

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.4825 0.6913 0.2668 0.0647 0.1101 0.0302 0.0669 0.1142 0.1 0.0954

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup8428
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|1023 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1023
MSNVSRGIGSLAVGHAESIRPMKSPAAVDEPPVHKLKLEHAPPYLTPPYGSLPSVTRWARRAKSGFLGEQQGDED
AGHTSPGASANGSAPQASSAPPLPKLDASSRVATTMFVEPTRQL*
Coding >Hirsu2|1023
ATGAGCAACGTGTCGCGCGGCATTGGCTCGTTGGCCGTCGGCCATGCTGAGTCAATTCGTCCGATGAAGTCCCCG
GCTGCGGTTGATGAACCCCCCGTTCACAAGCTGAAGCTGGAGCACGCTCCGCCTTACCTGACGCCGCCCTACGGC
AGCCTCCCGTCTGTCACTCGGTGGGCCCGTCGCGCAAAGAGTGGTTTTCTTGGCGAGCAACAAGGTGACGAAGAC
GCCGGTCACACCTCCCCAGGGGCCTCAGCAAACGGGTCTGCCCCTCAAGCCTCCTCGGCACCCCCTCTCCCCAAG
CTCGATGCTTCATCTCGCGTGGCCACCACGATGTTTGTAGAGCCGACTCGCCAGTTGTAG
Transcript >Hirsu2|1023
ATGAGCAACGTGTCGCGCGGCATTGGCTCGTTGGCCGTCGGCCATGCTGAGTCAATTCGTCCGATGAAGTCCCCG
GCTGCGGTTGATGAACCCCCCGTTCACAAGCTGAAGCTGGAGCACGCTCCGCCTTACCTGACGCCGCCCTACGGC
AGCCTCCCGTCTGTCACTCGGTGGGCCCGTCGCGCAAAGAGTGGTTTTCTTGGCGAGCAACAAGGTGACGAAGAC
GCCGGTCACACCTCCCCAGGGGCCTCAGCAAACGGGTCTGCCCCTCAAGCCTCCTCGGCACCCCCTCTCCCCAAG
CTCGATGCTTCATCTCGCGTGGCCACCACGATGTTTGTAGAGCCGACTCGCCAGTTGTAG
Gene >Hirsu2|1023
ATGAGCAACGTGTCGCGCGGCATTGGCTCGTTGGCCGTCGGCCATGCTGAGTCAATTCGTCCGATGAAGTCCCCG
GCTGCGGTTGATGAACCCCCCGTTCACAAGCTGAAGCTGGAGCACGCTCCGCCTTACCTGACGCCGCCCTACGGC
AGCCTCCCGTCTGTCACTCGGTGGGCCCGTCGCGCAAAGAGTGGTTTTCTTGGCGAGCAACAAGGTGACGAAGAC
GCCGGTCACACCTCCCCAGGGGCCTCAGCAAACGGGTCTGCCCCTCAAGCCTCCTCGGCACCCCCTCTCCCCAAG
CTCGATGCTTCATCTCGCGTGGCCACCACGATGTTTGTAGAGCCGACTCGCCAGTTGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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