© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|10216 |
| Gene name | |
| Location | Contig_803:6409..7540 |
| Strand | - |
| Gene length (bp) | 1131 |
| Transcript length (bp) | 1131 |
| Coding sequence length (bp) | 1131 |
| Protein length (aa) | 377 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF20055 | DUF6454 | Family of unknown function (DUF6454) | 2.3E-47 | 86 | 374 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Signal peptide | 0.2613 | 0.1295 | 0.6226 | 0.257 | 0.2604 | 0.1058 | 0.5677 | 0.5982 | 0.6192 | 0.0116 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 2 | 24 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 8424 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|10216 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10216 MALAAASLLALAITGALLAPLTGWKRATPAPLDANLMGELAACGAAPPPPLTPSRNVTFHRDVPLAPWPLPAPHA ESDGEAIVELFQALGRSTVWRSVANVSFEGDTFEPEGMVRLGPDRFVVSCGEYTERTERYGRIVNGTDRSPGKGF AHLVVFDGQGRRIADATITRAGALEYHNGGIDYDGRFIWGTVGQYRPNSTALVYKADPSVLEPRPVVRYADHLGG IVRDGPDDSIACLNWGSRSAAIWGLGRVGAGCDDGAGAVPSPVPRTVVRNPSSFVDYQDCKWLGRSRFYGGRSVM LCSGVATVGGYDLGGVALVDVASMAPLAEVPVALESALGVRMTQNPVDVSVHRGRLRFYWLPDQRNSTLYVYEAQ P* |
| Coding | >Hirsu2|10216 ATGGCTCTGGCGGCCGCGTCCCTACTGGCGCTGGCCATCACGGGCGCGCTCCTCGCGCCCTTGACGGGCTGGAAG AGGGCGACGCCAGCGCCCTTGGACGCCAACCTCATGGGCGAGCTCGCGGCATGCGGCGCTGCTCCGCCGCCGCCG CTGACTCCCTCGCGCAACGTCACCTTCCATCGGGACGTTCCGCTCGCGCCGTGGCCTCTCCCGGCGCCGCACGCC GAGTCCGACGGCGAGGCCATTGTCGAGCTGTTCCAGGCCCTCGGCCGGTCCACGGTGTGGCGGAGCGTCGCCAAC GTCTCCTTCGAGGGCGACACGTTCGAGCCCGAGGGCATGGTCCGGCTCGGGCCCGACCGGTTCGTCGTCAGCTGC GGCGAGTACACGGAGCGGACGGAGCGGTACGGACGCATCGTCAACGGCACCGACCGGTCGCCCGGTAAGGGATTC GCGCACCTTGTCGTCTTCGACGGCCAGGGGCGGCGCATTGCCGACGCCACCATCACCAGGGCAGGCGCGCTGGAA TACCACAACGGCGGCATCGACTACGATGGCCGCTTCATCTGGGGCACCGTCGGCCAGTATCGGCCCAACAGCACC GCGCTCGTCTACAAGGCCGACCCCTCAGTTCTCGAGCCCCGGCCCGTCGTCCGCTACGCCGACCACCTCGGCGGC ATCGTCCGCGACGGCCCGGACGACAGCATCGCCTGCCTGAACTGGGGCTCGCGCAGCGCCGCGATCTGGGGCCTG GGCCGCGTCGGCGCGGGGTGCGACGACGGCGCCGGCGCCGTTCCGTCGCCGGTGCCCCGAACCGTGGTGCGCAAC CCGAGCTCCTTCGTCGACTACCAGGACTGCAAGTGGCTCGGCCGCAGCCGCTTCTACGGCGGCAGAAGCGTCATG CTCTGCTCCGGCGTTGCAACCGTCGGCGGCTACGACCTCGGCGGCGTGGCGCTCGTCGACGTGGCCTCCATGGCG CCGCTGGCCGAGGTGCCCGTCGCGTTGGAGAGCGCGCTGGGCGTGCGCATGACGCAGAATCCCGTCGACGTGAGC GTCCATCGCGGGAGGCTGAGGTTCTACTGGCTGCCCGACCAGCGCAACAGCACCCTGTACGTGTACGAGGCGCAG CCGTGA |
| Transcript | >Hirsu2|10216 ATGGCTCTGGCGGCCGCGTCCCTACTGGCGCTGGCCATCACGGGCGCGCTCCTCGCGCCCTTGACGGGCTGGAAG AGGGCGACGCCAGCGCCCTTGGACGCCAACCTCATGGGCGAGCTCGCGGCATGCGGCGCTGCTCCGCCGCCGCCG CTGACTCCCTCGCGCAACGTCACCTTCCATCGGGACGTTCCGCTCGCGCCGTGGCCTCTCCCGGCGCCGCACGCC GAGTCCGACGGCGAGGCCATTGTCGAGCTGTTCCAGGCCCTCGGCCGGTCCACGGTGTGGCGGAGCGTCGCCAAC GTCTCCTTCGAGGGCGACACGTTCGAGCCCGAGGGCATGGTCCGGCTCGGGCCCGACCGGTTCGTCGTCAGCTGC GGCGAGTACACGGAGCGGACGGAGCGGTACGGACGCATCGTCAACGGCACCGACCGGTCGCCCGGTAAGGGATTC GCGCACCTTGTCGTCTTCGACGGCCAGGGGCGGCGCATTGCCGACGCCACCATCACCAGGGCAGGCGCGCTGGAA TACCACAACGGCGGCATCGACTACGATGGCCGCTTCATCTGGGGCACCGTCGGCCAGTATCGGCCCAACAGCACC GCGCTCGTCTACAAGGCCGACCCCTCAGTTCTCGAGCCCCGGCCCGTCGTCCGCTACGCCGACCACCTCGGCGGC ATCGTCCGCGACGGCCCGGACGACAGCATCGCCTGCCTGAACTGGGGCTCGCGCAGCGCCGCGATCTGGGGCCTG GGCCGCGTCGGCGCGGGGTGCGACGACGGCGCCGGCGCCGTTCCGTCGCCGGTGCCCCGAACCGTGGTGCGCAAC CCGAGCTCCTTCGTCGACTACCAGGACTGCAAGTGGCTCGGCCGCAGCCGCTTCTACGGCGGCAGAAGCGTCATG CTCTGCTCCGGCGTTGCAACCGTCGGCGGCTACGACCTCGGCGGCGTGGCGCTCGTCGACGTGGCCTCCATGGCG CCGCTGGCCGAGGTGCCCGTCGCGTTGGAGAGCGCGCTGGGCGTGCGCATGACGCAGAATCCCGTCGACGTGAGC GTCCATCGCGGGAGGCTGAGGTTCTACTGGCTGCCCGACCAGCGCAACAGCACCCTGTACGTGTACGAGGCGCAG CCGTGA |
| Gene | >Hirsu2|10216 ATGGCTCTGGCGGCCGCGTCCCTACTGGCGCTGGCCATCACGGGCGCGCTCCTCGCGCCCTTGACGGGCTGGAAG AGGGCGACGCCAGCGCCCTTGGACGCCAACCTCATGGGCGAGCTCGCGGCATGCGGCGCTGCTCCGCCGCCGCCG CTGACTCCCTCGCGCAACGTCACCTTCCATCGGGACGTTCCGCTCGCGCCGTGGCCTCTCCCGGCGCCGCACGCC GAGTCCGACGGCGAGGCCATTGTCGAGCTGTTCCAGGCCCTCGGCCGGTCCACGGTGTGGCGGAGCGTCGCCAAC GTCTCCTTCGAGGGCGACACGTTCGAGCCCGAGGGCATGGTCCGGCTCGGGCCCGACCGGTTCGTCGTCAGCTGC GGCGAGTACACGGAGCGGACGGAGCGGTACGGACGCATCGTCAACGGCACCGACCGGTCGCCCGGTAAGGGATTC GCGCACCTTGTCGTCTTCGACGGCCAGGGGCGGCGCATTGCCGACGCCACCATCACCAGGGCAGGCGCGCTGGAA TACCACAACGGCGGCATCGACTACGATGGCCGCTTCATCTGGGGCACCGTCGGCCAGTATCGGCCCAACAGCACC GCGCTCGTCTACAAGGCCGACCCCTCAGTTCTCGAGCCCCGGCCCGTCGTCCGCTACGCCGACCACCTCGGCGGC ATCGTCCGCGACGGCCCGGACGACAGCATCGCCTGCCTGAACTGGGGCTCGCGCAGCGCCGCGATCTGGGGCCTG GGCCGCGTCGGCGCGGGGTGCGACGACGGCGCCGGCGCCGTTCCGTCGCCGGTGCCCCGAACCGTGGTGCGCAAC CCGAGCTCCTTCGTCGACTACCAGGACTGCAAGTGGCTCGGCCGCAGCCGCTTCTACGGCGGCAGAAGCGTCATG CTCTGCTCCGGCGTTGCAACCGTCGGCGGCTACGACCTCGGCGGCGTGGCGCTCGTCGACGTGGCCTCCATGGCG CCGCTGGCCGAGGTGCCCGTCGCGTTGGAGAGCGCGCTGGGCGTGCGCATGACGCAGAATCCCGTCGACGTGAGC GTCCATCGCGGGAGGCTGAGGTTCTACTGGCTGCCCGACCAGCGCAACAGCACCCTGTACGTGTACGAGGCGCAG CCGTGA |