Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|10211
Gene name
LocationContig_802:1658..2308
Strand+
Gene length (bp)650
Transcript length (bp)576
Coding sequence length (bp)576
Protein length (aa) 192

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11707 Npa1 Ribosome 60S biogenesis N-terminal 4.3E-41 2 173

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 47 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|10211
MLEILDSLRLYVLMDSKIPREIKSRSFNTKTLMRFLTLYKTAGTSADPAEKDVVSERVDQFLKYICTAPSAGVLY
PYKGLYPKNAEDAYSDYPPKGRGECDGDGVRGDWSDKEFSVFNFVLCEFAEKLRPGSNPKHSELLVSIFTAAPEL
IARYFHDNRTFVFEPKLSSTWIGGPSAHIHSAGQHFAPRYQ*
Coding >Hirsu2|10211
ATGCTGGAGATCCTAGACTCCCTCAGGCTCTATGTCCTCATGGATAGCAAGATACCCAGAGAAATCAAGTCTCGG
AGCTTCAACACCAAGACGCTCATGAGATTTTTAACCCTCTACAAGACGGCTGGCACCTCTGCGGACCCTGCTGAG
AAAGACGTCGTGAGCGAGAGGGTCGACCAATTTCTCAAGTATATATGCACGGCGCCTAGTGCCGGCGTGCTTTAT
CCCTACAAGGGACTCTACCCCAAGAACGCAGAGGACGCATACTCTGATTATCCACCCAAGGGGCGCGGCGAGTGC
GACGGCGACGGGGTACGAGGCGATTGGTCCGACAAGGAATTTTCCGTCTTCAACTTCGTCCTGTGCGAGTTCGCT
GAAAAGCTGCGTCCAGGATCCAATCCGAAGCATAGCGAGCTGCTCGTGTCCATCTTCACGGCCGCCCCCGAACTG
ATAGCCAGGTACTTCCATGATAACCGAACCTTTGTTTTCGAGCCCAAGCTTTCCTCGACATGGATTGGAGGGCCC
TCCGCCCACATCCATTCTGCTGGACAACATTTTGCCCCCCGCTATCAATGA
Transcript >Hirsu2|10211
ATGCTGGAGATCCTAGACTCCCTCAGGCTCTATGTCCTCATGGATAGCAAGATACCCAGAGAAATCAAGTCTCGG
AGCTTCAACACCAAGACGCTCATGAGATTTTTAACCCTCTACAAGACGGCTGGCACCTCTGCGGACCCTGCTGAG
AAAGACGTCGTGAGCGAGAGGGTCGACCAATTTCTCAAGTATATATGCACGGCGCCTAGTGCCGGCGTGCTTTAT
CCCTACAAGGGACTCTACCCCAAGAACGCAGAGGACGCATACTCTGATTATCCACCCAAGGGGCGCGGCGAGTGC
GACGGCGACGGGGTACGAGGCGATTGGTCCGACAAGGAATTTTCCGTCTTCAACTTCGTCCTGTGCGAGTTCGCT
GAAAAGCTGCGTCCAGGATCCAATCCGAAGCATAGCGAGCTGCTCGTGTCCATCTTCACGGCCGCCCCCGAACTG
ATAGCCAGGTACTTCCATGATAACCGAACCTTTGTTTTCGAGCCCAAGCTTTCCTCGACATGGATTGGAGGGCCC
TCCGCCCACATCCATTCTGCTGGACAACATTTTGCCCCCCGCTATCAATGA
Gene >Hirsu2|10211
ATGCTGGAGATCCTAGACTCCCTCAGGCTCTATGTCCTCATGGATAGCAAGATACCCAGAGAAATCAAGTCTCGG
AGCTTCAACACCAAGACGCTCATGAGATTTTTAACCCTCTACAAGACGGCTGGCACCTCTGCGGACCCTGCTGAG
AAAGACGTCGTGAGCGAGAGGGTCGACCAATTTCTCAAGTATATATGCACGGCGCCTAGTGCCGGCGTGCTTTAT
CCCTACAAGGGACTCTACCCCAAGAACGCAGAGGACGCATACTCTGATTATCCACCCAAGGGGCGCGGCGAGTGC
GACGGCGACGGGGTACGAGGCGATTGGTCCGACAAGGAATTTTCCGTCTTCAACTTCGTCCTGTGCGAGTTCGCT
GAAAAGCTGCGTCCAGGATCCAATCCGAAGCATAGCGAGCTGCTCGTGTCCATCTTCACGGCCGCCCCCGAACTG
ATAGCCAGGTACTTCCATGATAACCGAACCTTTGTTTTCGAGCCCAAGCTTTCCTCGACATGGATTGGGTATGCG
GCTTTTCTATTCAACACAATCAGCATACCGCTTCCCCCCGACTTCGGAGATCCGGTACGGTGTGCAGAGGGCCCT
CCGCCCACATCCATTCTGCTGGACAACATTTTGCCCCCCGCTATCAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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