© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10185 |
| Gene name | |
| Location | Contig_80:4..843 |
| Strand | + |
| Gene length (bp) | 839 |
| Transcript length (bp) | 777 |
| Coding sequence length (bp) | 777 |
| Protein length (aa) | 259 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05786 | Cnd2 | Condensin complex subunit 2 | 3.7E-73 | 10 | 247 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38170|CND2_YEAST | Condensin complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRN1 PE=1 SV=3 | 124 | 243 | 1.0E-20 |
| sp|Q9Y7R3|CND2_SCHPO | Condensin complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cnd2 PE=1 SV=1 | 105 | 246 | 2.0E-19 |
| sp|Q564K3|CND2_ARATH | Condensin complex subunit 2 OS=Arabidopsis thaliana GN=CAPH PE=1 SV=1 | 115 | 246 | 1.0E-10 |
| sp|O13067|CND2_XENLA | Condensin complex subunit 2 OS=Xenopus laevis GN=ncaph PE=1 SV=1 | 106 | 248 | 2.0E-10 |
| sp|Q8C156|CND2_MOUSE | Condensin complex subunit 2 OS=Mus musculus GN=Ncaph PE=1 SV=1 | 116 | 243 | 2.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38170|CND2_YEAST | Condensin complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRN1 PE=1 SV=3 | 124 | 243 | 1.0E-20 |
| sp|Q9Y7R3|CND2_SCHPO | Condensin complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cnd2 PE=1 SV=1 | 105 | 246 | 2.0E-19 |
| sp|Q564K3|CND2_ARATH | Condensin complex subunit 2 OS=Arabidopsis thaliana GN=CAPH PE=1 SV=1 | 115 | 246 | 1.0E-10 |
| sp|O13067|CND2_XENLA | Condensin complex subunit 2 OS=Xenopus laevis GN=ncaph PE=1 SV=1 | 106 | 248 | 2.0E-10 |
| sp|Q8C156|CND2_MOUSE | Condensin complex subunit 2 OS=Mus musculus GN=Ncaph PE=1 SV=1 | 116 | 243 | 2.0E-09 |
| sp|Q15003|CND2_HUMAN | Condensin complex subunit 2 OS=Homo sapiens GN=NCAPH PE=1 SV=3 | 115 | 247 | 5.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000796 | condensin complex | Yes |
| GO:0007076 | mitotic chromosome condensation | Yes |
| GO:0005575 | cellular_component | No |
| GO:0044446 | intracellular organelle part | No |
| GO:0044422 | organelle part | No |
| GO:0044815 | DNA packaging complex | No |
| GO:0008150 | biological_process | No |
| GO:0051276 | chromosome organization | No |
| GO:0006323 | DNA packaging | No |
| GO:0030261 | chromosome condensation | No |
| GO:1903047 | mitotic cell cycle process | No |
| GO:0071103 | DNA conformation change | No |
| GO:0022402 | cell cycle process | No |
| GO:0044464 | cell part | No |
| GO:0006996 | organelle organization | No |
| GO:0044427 | chromosomal part | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0016043 | cellular component organization | No |
| GO:0044424 | intracellular part | No |
| GO:0032991 | protein-containing complex | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10185 MARRRAGLGPRAGPGHGQPDGAAVGEMDEAFWANRKGPEETAAPSGDYDADFFQDDGLPFPGGDEADEDELEFAD AREHMSPGIEGNAGMAGGLTAMLGGETYPLTQATGGAFGTTLVTQTRRVRPEYVQYARKAKKVDVRRLKEEIWKG LGLDKLEDPATDAGRLPTPPEPAEHEQQQQQQQQQQGRAEPALKFSEVMRGLQSVYPKTAMADISTSYCFICLLH LANEKGLVIEKTAELTELDIRKDWTAETVEGGD* |
| Coding | >Hirsu2|10185 ATGGCGCGCCGCCGGGCCGGGCTCGGCCCCCGCGCCGGGCCGGGCCACGGCCAGCCGGACGGCGCGGCGGTGGGC GAGATGGACGAGGCGTTCTGGGCCAACCGCAAGGGCCCCGAGGAGACGGCGGCGCCGTCGGGCGACTACGACGCC GACTTCTTCCAGGACGACGGCCTCCCGTTCCCCGGCGGGGACGAGGCGGACGAGGACGAGCTGGAGTTTGCGGAC GCGAGGGAACACATGTCGCCCGGGATCGAGGGCAACGCGGGCATGGCCGGCGGGCTGACGGCCATGCTGGGCGGC GAGACGTATCCGCTGACGCAGGCGACGGGCGGCGCGTTCGGGACGACGCTGGTGACGCAGACGCGGAGGGTGCGG CCCGAGTACGTGCAGTACGCGCGCAAGGCCAAGAAGGTGGACGTGCGGCGGCTCAAGGAGGAGATCTGGAAGGGC CTGGGCCTGGACAAGCTCGAGGATCCCGCGACGGACGCGGGCCGGCTCCCCACGCCGCCCGAGCCGGCGGAGCAC GAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGGCGGGCGGAGCCGGCGCTCAAGTTCAGCGAGGTGATGCGG GGGCTGCAGTCGGTGTACCCGAAGACGGCCATGGCCGACATCTCGACCTCGTACTGCTTCATCTGCCTGCTGCAC CTGGCCAACGAGAAGGGGCTGGTGATTGAGAAGACGGCGGAGCTGACGGAGCTGGACATCCGCAAGGACTGGACG GCCGAGACGGTCGAGGGCGGCGACTGA |
| Transcript | >Hirsu2|10185 ATGGCGCGCCGCCGGGCCGGGCTCGGCCCCCGCGCCGGGCCGGGCCACGGCCAGCCGGACGGCGCGGCGGTGGGC GAGATGGACGAGGCGTTCTGGGCCAACCGCAAGGGCCCCGAGGAGACGGCGGCGCCGTCGGGCGACTACGACGCC GACTTCTTCCAGGACGACGGCCTCCCGTTCCCCGGCGGGGACGAGGCGGACGAGGACGAGCTGGAGTTTGCGGAC GCGAGGGAACACATGTCGCCCGGGATCGAGGGCAACGCGGGCATGGCCGGCGGGCTGACGGCCATGCTGGGCGGC GAGACGTATCCGCTGACGCAGGCGACGGGCGGCGCGTTCGGGACGACGCTGGTGACGCAGACGCGGAGGGTGCGG CCCGAGTACGTGCAGTACGCGCGCAAGGCCAAGAAGGTGGACGTGCGGCGGCTCAAGGAGGAGATCTGGAAGGGC CTGGGCCTGGACAAGCTCGAGGATCCCGCGACGGACGCGGGCCGGCTCCCCACGCCGCCCGAGCCGGCGGAGCAC GAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGGCGGGCGGAGCCGGCGCTCAAGTTCAGCGAGGTGATGCGG GGGCTGCAGTCGGTGTACCCGAAGACGGCCATGGCCGACATCTCGACCTCGTACTGCTTCATCTGCCTGCTGCAC CTGGCCAACGAGAAGGGGCTGGTGATTGAGAAGACGGCGGAGCTGACGGAGCTGGACATCCGCAAGGACTGGACG GCCGAGACGGTCGAGGGCGGCGACTGA |
| Gene | >Hirsu2|10185 ATGGCGCGCCGCCGGGCCGGGCTCGGCCCCCGCGCCGGGCCGGGCCACGGCCAGCCGGACGGCGCGGCGGTGGGC GAGATGGACGAGGCGTTCTGGGCCAACCGCAAGGGCCCCGAGGAGACGGCGGCGCCGTCGGGCGACTACGACGCC GACTTCTTCCAGGACGACGGCCTCCCGTTCCCCGGCGGGGACGAGGCGGACGAGGACGAGCTGGAGTTTGCGGAC GCGAGGGAACACATGTCGCCCGGGATCGAGGGCAACGCGGGCATGGCCGGCGGGCTGACGGCCATGCTGGGCGGC GAGACGTATCCGCTGACGCAGGCGACGGGCGGCGCGTTCGGGACGACGCTGGTGACGCAGACGCGGAGGGTGCGG CCCGAGTACGTGCAGTACGCGCGCAAGGCCAAGAAGGTGGACGTGCGGCGGCTCAAGGAGGAGATCTGGAAGGGC CTGGGCCTGGACAAGCTCGAGGTGAGTGAGGGGCGACGACGGGATGGCGCAAGCGGGGGCGTGAACTGACGACGA CGGCGCAGGATCCCGCGACGGACGCGGGCCGGCTCCCCACGCCGCCCGAGCCGGCGGAGCACGAGCAGCAGCAGC AGCAGCAGCAGCAGCAGCAAGGGCGGGCGGAGCCGGCGCTCAAGTTCAGCGAGGTGATGCGGGGGCTGCAGTCGG TGTACCCGAAGACGGCCATGGCCGACATCTCGACCTCGTACTGCTTCATCTGCCTGCTGCACCTGGCCAACGAGA AGGGGCTGGTGATTGAGAAGACGGCGGAGCTGACGGAGCTGGACATCCGCAAGGACTGGACGGCCGAGACGGTCG AGGGCGGCGACTGA |