Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|10137
Gene name
LocationContig_796:1311..1977
Strand+
Gene length (bp)666
Transcript length (bp)666
Coding sequence length (bp)666
Protein length (aa) 222

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PFAM Domains

(None)

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q99385|VCX1_YEAST Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 17 217 5.0E-18
sp|O59768|VCX1_SCHPO Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vcx1 PE=3 SV=1 56 219 2.0E-13
sp|Q75XW3|CAX_APHHA Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 3 221 2.0E-13
sp|P74072|CAX_SYNY3 Ca(2+)/H(+) antiporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1336 PE=1 SV=1 24 221 9.0E-12
sp|Q769E5|CAX1A_ORYSJ Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1 22 220 4.0E-11
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q99385|VCX1_YEAST Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 17 217 5.0E-18
sp|O59768|VCX1_SCHPO Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vcx1 PE=3 SV=1 56 219 2.0E-13
sp|Q75XW3|CAX_APHHA Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 3 221 2.0E-13
sp|P74072|CAX_SYNY3 Ca(2+)/H(+) antiporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1336 PE=1 SV=1 24 221 9.0E-12
sp|Q769E5|CAX1A_ORYSJ Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1 22 220 4.0E-11
sp|Q39254|CAX2_ARATH Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2 22 220 1.0E-10
sp|Q8L783|CAX5_ARATH Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1 22 220 1.0E-10
sp|Q5KQN0|CAX2_ORYSJ Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2 97 220 3.0E-10
sp|Q93Z81|CAX3_ARATH Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1 17 220 5.0E-10
sp|Q39253|CAX1_ARATH Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3 22 220 1.0E-09
sp|Q5TKG3|CAX1B_ORYSJ Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1 6 220 2.0E-09
sp|Q6YXZ1|CAX4_ORYSJ Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1 22 218 2.0E-09
sp|Q6K1C4|CAX3_ORYSJ Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2 95 220 4.0E-09
sp|Q9LFZ8|CAX6_ARATH Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3 22 220 3.0E-08
sp|Q945S5|CAX4_ARATH Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2 13 220 3.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 49 0.5

Transmembrane Domains

Domain # Start End Length
1 21 43 22
2 80 102 22
3 115 137 22
4 157 179 22
5 186 208 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|10137
MAAGKRTAQAVGRGAPVDGKMLALSCTTAFALLALFLFYLSFRFLTHGQLFLRNPSTTRHSPGSPADGMPEAATL
EPLALGLGFAGSIACTAASAHFLLGSLKGSVGPLHATNSFIGLVVLPLAAGLAKSVAIVRHARSPANPGAGSGLD
FAIRSVMTNVLDTVLFIMPLLVLLGWAVGRPMLLDFGLFEMTVLLLAIMIMTSLVQHGKTTYFEGFMLMVT*
Coding >Hirsu2|10137
ATGGCAGCCGGGAAGCGCACGGCGCAGGCCGTCGGTCGGGGGGCGCCGGTCGACGGCAAGATGCTCGCCCTGTCC
TGCACGACGGCCTTTGCTCTTCTCGCCCTGTTCCTCTTCTATCTCAGCTTCCGCTTCCTGACGCACGGCCAGCTG
TTTCTGCGAAACCCGAGCACGACGCGGCACAGCCCAGGCAGCCCGGCCGACGGCATGCCCGAGGCTGCCACTCTC
GAGCCGCTGGCCCTGGGCCTGGGCTTCGCAGGAAGCATCGCCTGCACGGCTGCAAGCGCCCACTTCCTACTTGGT
AGCCTCAAGGGTTCCGTCGGGCCGCTTCATGCCACCAACTCGTTCATCGGGCTCGTCGTCCTGCCACTCGCTGCG
GGCCTGGCCAAGTCGGTAGCAATAGTCCGGCACGCCCGGTCCCCGGCCAACCCCGGCGCGGGGAGCGGGCTGGAC
TTTGCGATCCGTTCCGTCATGACCAACGTGCTAGACACAGTGCTTTTCATTATGCCCTTGCTCGTGCTGCTGGGC
TGGGCCGTTGGGCGGCCCATGCTTCTCGATTTTGGCCTCTTCGAGATGACGGTGCTTCTCTTGGCCATCATGATC
ATGACGTCTCTGGTGCAGCACGGGAAGACGACATACTTCGAGGGGTTCATGCTCATGGTAACGTAA
Transcript >Hirsu2|10137
ATGGCAGCCGGGAAGCGCACGGCGCAGGCCGTCGGTCGGGGGGCGCCGGTCGACGGCAAGATGCTCGCCCTGTCC
TGCACGACGGCCTTTGCTCTTCTCGCCCTGTTCCTCTTCTATCTCAGCTTCCGCTTCCTGACGCACGGCCAGCTG
TTTCTGCGAAACCCGAGCACGACGCGGCACAGCCCAGGCAGCCCGGCCGACGGCATGCCCGAGGCTGCCACTCTC
GAGCCGCTGGCCCTGGGCCTGGGCTTCGCAGGAAGCATCGCCTGCACGGCTGCAAGCGCCCACTTCCTACTTGGT
AGCCTCAAGGGTTCCGTCGGGCCGCTTCATGCCACCAACTCGTTCATCGGGCTCGTCGTCCTGCCACTCGCTGCG
GGCCTGGCCAAGTCGGTAGCAATAGTCCGGCACGCCCGGTCCCCGGCCAACCCCGGCGCGGGGAGCGGGCTGGAC
TTTGCGATCCGTTCCGTCATGACCAACGTGCTAGACACAGTGCTTTTCATTATGCCCTTGCTCGTGCTGCTGGGC
TGGGCCGTTGGGCGGCCCATGCTTCTCGATTTTGGCCTCTTCGAGATGACGGTGCTTCTCTTGGCCATCATGATC
ATGACGTCTCTGGTGCAGCACGGGAAGACGACATACTTCGAGGGGTTCATGCTCATGGTAACGTAA
Gene >Hirsu2|10137
ATGGCAGCCGGGAAGCGCACGGCGCAGGCCGTCGGTCGGGGGGCGCCGGTCGACGGCAAGATGCTCGCCCTGTCC
TGCACGACGGCCTTTGCTCTTCTCGCCCTGTTCCTCTTCTATCTCAGCTTCCGCTTCCTGACGCACGGCCAGCTG
TTTCTGCGAAACCCGAGCACGACGCGGCACAGCCCAGGCAGCCCGGCCGACGGCATGCCCGAGGCTGCCACTCTC
GAGCCGCTGGCCCTGGGCCTGGGCTTCGCAGGAAGCATCGCCTGCACGGCTGCAAGCGCCCACTTCCTACTTGGT
AGCCTCAAGGGTTCCGTCGGGCCGCTTCATGCCACCAACTCGTTCATCGGGCTCGTCGTCCTGCCACTCGCTGCG
GGCCTGGCCAAGTCGGTAGCAATAGTCCGGCACGCCCGGTCCCCGGCCAACCCCGGCGCGGGGAGCGGGCTGGAC
TTTGCGATCCGTTCCGTCATGACCAACGTGCTAGACACAGTGCTTTTCATTATGCCCTTGCTCGTGCTGCTGGGC
TGGGCCGTTGGGCGGCCCATGCTTCTCGATTTTGGCCTCTTCGAGATGACGGTGCTTCTCTTGGCCATCATGATC
ATGACGTCTCTGGTGCAGCACGGGAAGACGACATACTTCGAGGGGTTCATGCTCATGGTAACGTAA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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