Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|10127
Gene name
LocationContig_793:24..709
Strand-
Gene length (bp)685
Transcript length (bp)417
Coding sequence length (bp)417
Protein length (aa) 139

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00282 Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain 2.3E-24 45 136

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O96567|DDC_DROSI Aromatic-L-amino-acid decarboxylase OS=Drosophila simulans GN=Ddc PE=3 SV=2 11 136 2.0E-40
sp|P05031|DDC_DROME Aromatic-L-amino-acid decarboxylase OS=Drosophila melanogaster GN=Ddc PE=1 SV=4 11 136 2.0E-40
sp|P18486|L2AM_DROME Alpha-methyldopa hypersensitive protein OS=Drosophila melanogaster GN=amd PE=2 SV=2 11 137 2.0E-40
sp|P48861|DDC_MANSE Aromatic-L-amino-acid decarboxylase OS=Manduca sexta GN=Ddc PE=2 SV=1 11 136 4.0E-40
sp|P27718|DDC_BOVIN Aromatic-L-amino-acid decarboxylase OS=Bos taurus GN=DDC PE=2 SV=2 11 136 6.0E-40
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Swissprot ID Swissprot Description Start End E-value
sp|O96567|DDC_DROSI Aromatic-L-amino-acid decarboxylase OS=Drosophila simulans GN=Ddc PE=3 SV=2 11 136 2.0E-40
sp|P05031|DDC_DROME Aromatic-L-amino-acid decarboxylase OS=Drosophila melanogaster GN=Ddc PE=1 SV=4 11 136 2.0E-40
sp|P18486|L2AM_DROME Alpha-methyldopa hypersensitive protein OS=Drosophila melanogaster GN=amd PE=2 SV=2 11 137 2.0E-40
sp|P48861|DDC_MANSE Aromatic-L-amino-acid decarboxylase OS=Manduca sexta GN=Ddc PE=2 SV=1 11 136 4.0E-40
sp|P27718|DDC_BOVIN Aromatic-L-amino-acid decarboxylase OS=Bos taurus GN=DDC PE=2 SV=2 11 136 6.0E-40
sp|P14173|DDC_RAT Aromatic-L-amino-acid decarboxylase OS=Rattus norvegicus GN=Ddc PE=1 SV=1 11 136 7.0E-39
sp|P22781|DDC_CAVPO Aromatic-L-amino-acid decarboxylase OS=Cavia porcellus GN=DDC PE=2 SV=1 11 136 2.0E-38
sp|P80041|DDC_PIG Aromatic-L-amino-acid decarboxylase OS=Sus scrofa GN=DDC PE=1 SV=2 11 136 4.0E-38
sp|P20711|DDC_HUMAN Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1 SV=2 11 136 3.0E-37
sp|Q05733|DCHS_DROME Histidine decarboxylase OS=Drosophila melanogaster GN=Hdc PE=2 SV=2 11 136 6.0E-37
sp|Q06086|TYDC2_PETCR Tyrosine decarboxylase 2 OS=Petroselinum crispum GN=TYRDC-2 PE=2 SV=1 11 136 2.0E-36
sp|Q06088|TYDC4_PETCR Tyrosine decarboxylase 4 OS=Petroselinum crispum GN=TYRDC-4 PE=2 SV=1 11 136 2.0E-36
sp|Q06087|TYDC3_PETCR Tyrosine decarboxylase 3 OS=Petroselinum crispum GN=TYRDC-3 PE=2 SV=1 11 136 2.0E-36
sp|P17770|DDC_CATRO Aromatic-L-amino-acid decarboxylase OS=Catharanthus roseus GN=TDC PE=2 SV=1 2 136 3.0E-36
sp|Q95ZS2|TDC1_CAEEL Tyrosine decarboxylase OS=Caenorhabditis elegans GN=tdc-1 PE=2 SV=1 11 136 3.0E-36
sp|O88533|DDC_MOUSE Aromatic-L-amino-acid decarboxylase OS=Mus musculus GN=Ddc PE=1 SV=1 11 136 5.0E-36
sp|Q06085|TYDC1_PETCR Tyrosine decarboxylase 1 (Fragment) OS=Petroselinum crispum GN=TYRDC-1 PE=2 SV=1 15 136 5.0E-36
sp|Q7XHL3|TYDC1_ORYSJ Tyrosine decarboxylase 1 OS=Oryza sativa subsp. japonica GN=Os07g0437500 PE=2 SV=1 9 136 8.0E-36
sp|P54769|TYDC2_PAPSO Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferum GN=TYDC2 PE=2 SV=1 11 136 3.0E-35
sp|P54770|TYDC3_PAPSO Tyrosine/DOPA decarboxylase 3 OS=Papaver somniferum GN=TYDC3 PE=2 SV=2 11 136 4.0E-35
sp|Q8RY79|TYDC1_ARATH Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5 PE=2 SV=1 4 136 5.0E-35
sp|Q5EA83|DCHS_BOVIN Histidine decarboxylase OS=Bos taurus GN=HDC PE=2 SV=1 10 136 8.0E-34
sp|P54768|TYDC1_PAPSO Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferum GN=TYDC1 PE=2 SV=1 11 136 1.0E-33
sp|P19113|DCHS_HUMAN Histidine decarboxylase OS=Homo sapiens GN=HDC PE=1 SV=2 10 136 2.0E-33
sp|P16453|DCHS_RAT Histidine decarboxylase OS=Rattus norvegicus GN=Hdc PE=2 SV=2 14 136 3.0E-31
sp|P23738|DCHS_MOUSE Histidine decarboxylase OS=Mus musculus GN=Hdc PE=1 SV=2 20 136 1.0E-30
sp|Q9M0G4|TYDC2_ARATH Probable tyrosine decarboxylase 2 OS=Arabidopsis thaliana GN=At4g28680 PE=2 SV=1 11 136 3.0E-30
sp|P54771|TYDC5_PAPSO Tyrosine/DOPA decarboxylase 5 OS=Papaver somniferum GN=TYDC5 PE=2 SV=1 11 136 3.0E-27
sp|P34751|DDC_CAEEL Probable aromatic-L-amino-acid decarboxylase OS=Caenorhabditis elegans GN=hdl-1 PE=2 SV=3 4 136 9.0E-25
sp|O96569|L2AM_DROLE Alpha-methyldopa hypersensitive protein (Fragment) OS=Drosophila lebanonensis GN=amd PE=3 SV=1 84 137 1.0E-11
sp|O96571|DDC_DROLE Aromatic-L-amino-acid decarboxylase (Fragment) OS=Drosophila lebanonensis GN=Ddc PE=3 SV=1 85 136 8.0E-10
sp|P81893|L2AM_DROSI Alpha-methyldopa hypersensitive protein (Fragment) OS=Drosophila simulans GN=amd PE=2 SV=1 95 137 9.0E-10
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GO

GO Term Description Terminal node
GO:0016831 carboxy-lyase activity Yes
GO:0030170 pyridoxal phosphate binding Yes
GO:0019752 carboxylic acid metabolic process Yes
GO:0044237 cellular metabolic process No
GO:0003674 molecular_function No
GO:0008144 drug binding No
GO:0036094 small molecule binding No
GO:0008150 biological_process No
GO:0016829 lyase activity No
GO:0008152 metabolic process No
GO:0043436 oxoacid metabolic process No
GO:0005488 binding No
GO:0071704 organic substance metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0009987 cellular process No
GO:0048037 cofactor binding No
GO:0050662 coenzyme binding No
GO:0006082 organic acid metabolic process No
GO:0016830 carbon-carbon lyase activity No
GO:0070279 vitamin B6 binding No
GO:0019842 vitamin binding No
GO:0003824 catalytic activity No
GO:0043168 anion binding No
GO:0043167 ion binding No
GO:0044281 small molecule metabolic process No
GO:1901363 heterocyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 70 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|10127
MESETGDERIMDSQQFRVAAKAAVDQIADYLESVPSRRVVSAVAPGYLRPLLPESAPQEPEPWEAIAADISAKIV
PGITHWSSPRFMAFFPCTGSYPAAVAEMWSNAFNGAHFNWVCSPAVTELEVVVMDWTARLLPS*
Coding >Hirsu2|10127
ATGGAGAGCGAGACGGGCGACGAGCGCATCATGGACAGCCAGCAGTTTCGGGTCGCGGCCAAGGCGGCTGTTGAC
CAAATCGCCGACTACCTGGAATCGGTGCCGTCGCGGCGGGTAGTGTCAGCGGTGGCGCCCGGGTACCTGCGGCCG
CTGCTGCCGGAGTCGGCGCCGCAGGAGCCGGAGCCGTGGGAGGCGATCGCGGCGGACATCTCGGCCAAGATCGTG
CCGGGCATCACGCACTGGTCGAGCCCGCGCTTCATGGCCTTCTTCCCCTGCACCGGCAGCTATCCGGCGGCGGTG
GCGGAGATGTGGTCGAACGCGTTCAACGGCGCGCACTTCAACTGGGTCTGCAGCCCGGCGGTGACGGAGCTGGAG
GTGGTGGTGATGGACTGGACGGCGCGGCTGCTGCCATCCTGA
Transcript >Hirsu2|10127
ATGGAGAGCGAGACGGGCGACGAGCGCATCATGGACAGCCAGCAGTTTCGGGTCGCGGCCAAGGCGGCTGTTGAC
CAAATCGCCGACTACCTGGAATCGGTGCCGTCGCGGCGGGTAGTGTCAGCGGTGGCGCCCGGGTACCTGCGGCCG
CTGCTGCCGGAGTCGGCGCCGCAGGAGCCGGAGCCGTGGGAGGCGATCGCGGCGGACATCTCGGCCAAGATCGTG
CCGGGCATCACGCACTGGTCGAGCCCGCGCTTCATGGCCTTCTTCCCCTGCACCGGCAGCTATCCGGCGGCGGTG
GCGGAGATGTGGTCGAACGCGTTCAACGGCGCGCACTTCAACTGGGTCTGCAGCCCGGCGGTGACGGAGCTGGAG
GTGGTGGTGATGGACTGGACGGCGCGGCTGCTGCCATCCTGA
Gene >Hirsu2|10127
ATGGAGAGCGAGACGGGCGACGAGCGCATCATGGACAGCCAGCAGTTTCGGGTCGCGGCCAAGGCGGCTGTTGAC
CAAAGTGAGTCGTCTCCCCCCCCCCCTCCTGTCGTTCTTGATGGGTCCCCTCCCCCGCCTTTTGCCCAGCGCTTG
GCTGCCCCTCCTGGAGCCGAGGAAGCGGGCTCTCAGCCTCGCCCTCCTCCCTCTCAGCCTTGTTGTCACGGCGGC
GGCGGCTGCTGTTCTTCTTCTTTTTTCTTCTGACGGGAGAACGGAGCAGTCGCCGACTACCTGGAATCGGTGCCG
TCGCGGCGGGTAGTGTCAGCGGTGGCGCCCGGGTACCTGCGGCCGCTGCTGCCGGAGTCGGCGCCGCAGGAGCCG
GAGCCGTGGGAGGCGATCGCGGCGGACATCTCGGCCAAGATCGTGCCGGGCATCACGCACTGGTCGAGCCCGCGC
TTCATGGCCTTCTTCCCCTGCACCGGCAGCTATCCGGCGGCGGTGGCGGAGATGTGGTCGAACGCGTTCAACGGC
GCGCACTTCAACTGGGTCTGCAGCCCGGCGGTGACGGAGCTGGAGGTGGTGGTGATGGACTGGACGGCGCGGCTG
CTGTCGCTACCGGCCTGCTTCCGCACCGACGGGCCGACGCGCGGCGGCGGCGTCATCCTCGGCTCGGCCAGCGAG
GCCATCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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