Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1012
Gene name
LocationContig_121:3642..4603
Strand-
Gene length (bp)961
Transcript length (bp)633
Coding sequence length (bp)633
Protein length (aa) 211

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01894 UPF0047 Uncharacterised protein family UPF0047 1.3E-36 84 204

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O14155|YE72_SCHPO UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1 65 207 2.0E-46
sp|P0AF48|YJBQ_ECOLI UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1 67 208 3.0E-43
sp|P0AF49|YJBQ_ECO57 UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1 67 208 3.0E-43
sp|P0A2L1|YJBQ_SALTY UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1 67 208 2.0E-31
sp|P0A2L2|YJBQ_SALTI UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1 67 208 2.0E-31
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O14155|YE72_SCHPO UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1 65 207 2.0E-46
sp|P0AF48|YJBQ_ECOLI UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1 67 208 3.0E-43
sp|P0AF49|YJBQ_ECO57 UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1 67 208 3.0E-43
sp|P0A2L1|YJBQ_SALTY UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1 67 208 2.0E-31
sp|P0A2L2|YJBQ_SALTI UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1 67 208 2.0E-31
sp|P74125|Y1880_SYNY3 UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1880 PE=3 SV=1 63 209 7.0E-25
sp|Q58481|Y1081_METJA UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1081 PE=3 SV=1 84 208 9.0E-16
sp|O28229|Y2050_ARCFU UPF0047 protein AF_2050 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2050 PE=3 SV=1 71 205 2.0E-13
sp|O26865|Y771_METTH UPF0047 protein MTH_771 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_771 PE=3 SV=1 65 208 2.0E-13
sp|O05243|YUGU_BACSU UPF0047 protein YugU OS=Bacillus subtilis (strain 168) GN=yugU PE=3 SV=2 70 192 3.0E-12
[Show less]

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Endoplasmic reticulum|Lysosome/Vacuole Transmembrane domain 0.2686 0.1662 0.2855 0.3719 0.5494 0.3431 0.7268 0.6589 0.4955 0.6979

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 13 35 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup1105
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|722
Ophiocordyceps australis map64 (Brazil) OphauB2|5666
Ophiocordyceps camponoti-floridani Ophcf2|05031
Ophiocordyceps camponoti-rufipedis Ophun1|4603
Ophiocordyceps kimflemingae Ophio5|2100
Ophiocordyceps subramaniannii Hirsu2|1012 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1012
MPLSSSAHGISTTATIALTLVLFVALFPDLFHLIWTLPLSLVRLPFSSRPPPSDRPDLQPQPAAMPWFQKQLTLP
SQSRGSYLITDQIVSSLPEIRNYKVGLLNLFVQHTSCALSLNENWDEDVREDMSNALDRIAPAHGPKGETLYLHS
AEGPDDMPAHIKSALIGASVTIPIKDGKLATGTWQGIWYLEFRASKHSRRIMATIQGETQ*
Coding >Hirsu2|1012
ATGCCTTTATCCTCGTCGGCTCACGGCATTTCCACGACAGCTACGATTGCGCTCACCCTCGTGCTCTTCGTCGCG
CTGTTCCCCGACCTCTTTCATCTCATCTGGACGCTGCCCTTGAGCCTCGTCCGCCTGCCCTTCTCGTCTCGGCCC
CCGCCGAGCGACCGTCCCGACCTACAGCCGCAGCCGGCAGCCATGCCTTGGTTCCAGAAGCAGCTGACGCTGCCG
TCCCAGTCGCGCGGCTCGTATCTGATCACCGACCAGATCGTGTCCTCCCTGCCGGAGATCAGGAACTACAAGGTC
GGTCTGCTGAACCTCTTTGTGCAGCATACGAGCTGCGCTCTGAGCCTGAACGAGAACTGGGACGAGGACGTCAGG
GAAGACATGAGCAACGCGCTGGACCGCATAGCCCCTGCCCATGGCCCCAAGGGCGAGACGCTGTACCTCCACAGC
GCCGAAGGACCCGACGACATGCCGGCCCATATCAAGTCGGCCCTCATCGGCGCCAGCGTGACGATTCCCATCAAG
GACGGAAAGCTGGCTACGGGCACCTGGCAAGGCATCTGGTATCTCGAGTTCCGGGCCAGCAAACACTCACGTCGA
ATCATGGCCACCATCCAGGGGGAGACGCAGTAG
Transcript >Hirsu2|1012
ATGCCTTTATCCTCGTCGGCTCACGGCATTTCCACGACAGCTACGATTGCGCTCACCCTCGTGCTCTTCGTCGCG
CTGTTCCCCGACCTCTTTCATCTCATCTGGACGCTGCCCTTGAGCCTCGTCCGCCTGCCCTTCTCGTCTCGGCCC
CCGCCGAGCGACCGTCCCGACCTACAGCCGCAGCCGGCAGCCATGCCTTGGTTCCAGAAGCAGCTGACGCTGCCG
TCCCAGTCGCGCGGCTCGTATCTGATCACCGACCAGATCGTGTCCTCCCTGCCGGAGATCAGGAACTACAAGGTC
GGTCTGCTGAACCTCTTTGTGCAGCATACGAGCTGCGCTCTGAGCCTGAACGAGAACTGGGACGAGGACGTCAGG
GAAGACATGAGCAACGCGCTGGACCGCATAGCCCCTGCCCATGGCCCCAAGGGCGAGACGCTGTACCTCCACAGC
GCCGAAGGACCCGACGACATGCCGGCCCATATCAAGTCGGCCCTCATCGGCGCCAGCGTGACGATTCCCATCAAG
GACGGAAAGCTGGCTACGGGCACCTGGCAAGGCATCTGGTATCTCGAGTTCCGGGCCAGCAAACACTCACGTCGA
ATCATGGCCACCATCCAGGGGGAGACGCAGTAG
Gene >Hirsu2|1012
ATGCCTTTATCCTCGTCGGCTCACGGCATTTCCACGACAGCTACGATTGCGCTCACCCTCGTGCTCTTCGTCGCG
CTGTTCCCCGACCTCTTTCATCTCATCTGGACGCTGCCCTTGAGCCTCGTCCGCCTGCCCTTCTCGTCTCGGCCC
CCGCCGAGCGACCGTCCCGACCTACAGCCGCAGCCGGCAGCCATGCCTTGGTTCCAGAAGCAGCTGACGCTGCCG
TCCCAGTCGCGCGGCTCGTATCTGATCACCGACCAGATCGTGTCCTCCCTGCCGGAGATCAGGAACTACAAGGTC
GGTCTGCTGAACCTCTTTGTGCAGCATACGAGCTGCGCTCTGAGCCTGAACGAGAACTGTACGTGACGCCACGAG
AAACGTCGGGAGCACAAAAAAAAAAAAGGGGGGGGGGGGGGGGCAAGAGCGGCCGTCGCCTCGCTCGGTTTTGTC
GAGTTGCTTGCTGAATCGCGCTGCGGGCAGGGGACGAGGACGTCAGGGAAGACATGAGCAACGCGCTGGACCGCA
TAGCCCCTGCCCATGGCCCCAAGGGCGAGACGCTGTACCTCCACAGGTGAGCCGGTGGACACGAGCAAGCACAAG
AGGCCGTGAGCCGGAGTAACCAGGCCTATTTCTCCCGCAACAGCGCCGAAGGACCCGACGACATGCCGGTGAGTG
CCGTTGGGCAGACCTGGCACGCGTTGACGAGGCTGAGCTGAAAACGGCCCGTACAGGCCCATATCAAGTCGGCCC
TCATCGGCGCCAGCGTGACGATTCCCATCAAGGACGGAAAGCTGGTGCGTCAAGCAAGACCAAGGCCCAACCGCA
CACGGCGCTGACTGGGGTTTGTCCCCCTTCTCCCCCATAGGCTACGGGCACCTGGCAAGGCATCTGGTATCTCGA
GTTCCGGGCCAGCAAACACTCACGTCGAATCATGGCCACCATCCAGGGGGAGACGCAGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail