Protein ID | Hirsu2|1012 |
Gene name | |
Location | Contig_121:3642..4603 |
Strand | - |
Gene length (bp) | 961 |
Transcript length (bp) | 633 |
Coding sequence length (bp) | 633 |
Protein length (aa) | 211 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01894 | UPF0047 | Uncharacterised protein family UPF0047 | 1.3E-36 | 84 | 204 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O14155|YE72_SCHPO | UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1 | 65 | 207 | 2.0E-46 |
sp|P0AF48|YJBQ_ECOLI | UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1 | 67 | 208 | 3.0E-43 |
sp|P0AF49|YJBQ_ECO57 | UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1 | 67 | 208 | 3.0E-43 |
sp|P0A2L1|YJBQ_SALTY | UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1 | 67 | 208 | 2.0E-31 |
sp|P0A2L2|YJBQ_SALTI | UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1 | 67 | 208 | 2.0E-31 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O14155|YE72_SCHPO | UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1 | 65 | 207 | 2.0E-46 |
sp|P0AF48|YJBQ_ECOLI | UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1 | 67 | 208 | 3.0E-43 |
sp|P0AF49|YJBQ_ECO57 | UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1 | 67 | 208 | 3.0E-43 |
sp|P0A2L1|YJBQ_SALTY | UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1 | 67 | 208 | 2.0E-31 |
sp|P0A2L2|YJBQ_SALTI | UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1 | 67 | 208 | 2.0E-31 |
sp|P74125|Y1880_SYNY3 | UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1880 PE=3 SV=1 | 63 | 209 | 7.0E-25 |
sp|Q58481|Y1081_METJA | UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1081 PE=3 SV=1 | 84 | 208 | 9.0E-16 |
sp|O28229|Y2050_ARCFU | UPF0047 protein AF_2050 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2050 PE=3 SV=1 | 71 | 205 | 2.0E-13 |
sp|O26865|Y771_METTH | UPF0047 protein MTH_771 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_771 PE=3 SV=1 | 65 | 208 | 2.0E-13 |
sp|O05243|YUGU_BACSU | UPF0047 protein YugU OS=Bacillus subtilis (strain 168) GN=yugU PE=3 SV=2 | 70 | 192 | 3.0E-12 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum|Lysosome/Vacuole | Transmembrane domain | 0.2686 | 0.1662 | 0.2855 | 0.3719 | 0.5494 | 0.3431 | 0.7268 | 0.6589 | 0.4955 | 0.6979 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 13 | 35 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 1105 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1012 MPLSSSAHGISTTATIALTLVLFVALFPDLFHLIWTLPLSLVRLPFSSRPPPSDRPDLQPQPAAMPWFQKQLTLP SQSRGSYLITDQIVSSLPEIRNYKVGLLNLFVQHTSCALSLNENWDEDVREDMSNALDRIAPAHGPKGETLYLHS AEGPDDMPAHIKSALIGASVTIPIKDGKLATGTWQGIWYLEFRASKHSRRIMATIQGETQ* |
Coding | >Hirsu2|1012 ATGCCTTTATCCTCGTCGGCTCACGGCATTTCCACGACAGCTACGATTGCGCTCACCCTCGTGCTCTTCGTCGCG CTGTTCCCCGACCTCTTTCATCTCATCTGGACGCTGCCCTTGAGCCTCGTCCGCCTGCCCTTCTCGTCTCGGCCC CCGCCGAGCGACCGTCCCGACCTACAGCCGCAGCCGGCAGCCATGCCTTGGTTCCAGAAGCAGCTGACGCTGCCG TCCCAGTCGCGCGGCTCGTATCTGATCACCGACCAGATCGTGTCCTCCCTGCCGGAGATCAGGAACTACAAGGTC GGTCTGCTGAACCTCTTTGTGCAGCATACGAGCTGCGCTCTGAGCCTGAACGAGAACTGGGACGAGGACGTCAGG GAAGACATGAGCAACGCGCTGGACCGCATAGCCCCTGCCCATGGCCCCAAGGGCGAGACGCTGTACCTCCACAGC GCCGAAGGACCCGACGACATGCCGGCCCATATCAAGTCGGCCCTCATCGGCGCCAGCGTGACGATTCCCATCAAG GACGGAAAGCTGGCTACGGGCACCTGGCAAGGCATCTGGTATCTCGAGTTCCGGGCCAGCAAACACTCACGTCGA ATCATGGCCACCATCCAGGGGGAGACGCAGTAG |
Transcript | >Hirsu2|1012 ATGCCTTTATCCTCGTCGGCTCACGGCATTTCCACGACAGCTACGATTGCGCTCACCCTCGTGCTCTTCGTCGCG CTGTTCCCCGACCTCTTTCATCTCATCTGGACGCTGCCCTTGAGCCTCGTCCGCCTGCCCTTCTCGTCTCGGCCC CCGCCGAGCGACCGTCCCGACCTACAGCCGCAGCCGGCAGCCATGCCTTGGTTCCAGAAGCAGCTGACGCTGCCG TCCCAGTCGCGCGGCTCGTATCTGATCACCGACCAGATCGTGTCCTCCCTGCCGGAGATCAGGAACTACAAGGTC GGTCTGCTGAACCTCTTTGTGCAGCATACGAGCTGCGCTCTGAGCCTGAACGAGAACTGGGACGAGGACGTCAGG GAAGACATGAGCAACGCGCTGGACCGCATAGCCCCTGCCCATGGCCCCAAGGGCGAGACGCTGTACCTCCACAGC GCCGAAGGACCCGACGACATGCCGGCCCATATCAAGTCGGCCCTCATCGGCGCCAGCGTGACGATTCCCATCAAG GACGGAAAGCTGGCTACGGGCACCTGGCAAGGCATCTGGTATCTCGAGTTCCGGGCCAGCAAACACTCACGTCGA ATCATGGCCACCATCCAGGGGGAGACGCAGTAG |
Gene | >Hirsu2|1012 ATGCCTTTATCCTCGTCGGCTCACGGCATTTCCACGACAGCTACGATTGCGCTCACCCTCGTGCTCTTCGTCGCG CTGTTCCCCGACCTCTTTCATCTCATCTGGACGCTGCCCTTGAGCCTCGTCCGCCTGCCCTTCTCGTCTCGGCCC CCGCCGAGCGACCGTCCCGACCTACAGCCGCAGCCGGCAGCCATGCCTTGGTTCCAGAAGCAGCTGACGCTGCCG TCCCAGTCGCGCGGCTCGTATCTGATCACCGACCAGATCGTGTCCTCCCTGCCGGAGATCAGGAACTACAAGGTC GGTCTGCTGAACCTCTTTGTGCAGCATACGAGCTGCGCTCTGAGCCTGAACGAGAACTGTACGTGACGCCACGAG AAACGTCGGGAGCACAAAAAAAAAAAAGGGGGGGGGGGGGGGGCAAGAGCGGCCGTCGCCTCGCTCGGTTTTGTC GAGTTGCTTGCTGAATCGCGCTGCGGGCAGGGGACGAGGACGTCAGGGAAGACATGAGCAACGCGCTGGACCGCA TAGCCCCTGCCCATGGCCCCAAGGGCGAGACGCTGTACCTCCACAGGTGAGCCGGTGGACACGAGCAAGCACAAG AGGCCGTGAGCCGGAGTAACCAGGCCTATTTCTCCCGCAACAGCGCCGAAGGACCCGACGACATGCCGGTGAGTG CCGTTGGGCAGACCTGGCACGCGTTGACGAGGCTGAGCTGAAAACGGCCCGTACAGGCCCATATCAAGTCGGCCC TCATCGGCGCCAGCGTGACGATTCCCATCAAGGACGGAAAGCTGGTGCGTCAAGCAAGACCAAGGCCCAACCGCA CACGGCGCTGACTGGGGTTTGTCCCCCTTCTCCCCCATAGGCTACGGGCACCTGGCAAGGCATCTGGTATCTCGA GTTCCGGGCCAGCAAACACTCACGTCGAATCATGGCCACCATCCAGGGGGAGACGCAGTAG |