© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1011 |
| Gene name | |
| Location | Contig_121:2634..3491 |
| Strand | + |
| Gene length (bp) | 857 |
| Transcript length (bp) | 801 |
| Coding sequence length (bp) | 801 |
| Protein length (aa) | 267 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13869 | NUDIX_2 | Nucleotide hydrolase | 9.0E-80 | 28 | 219 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8GXS3|CFIS2_ARATH | Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE=1 SV=1 | 29 | 226 | 5.0E-77 |
| sp|Q5RAI8|CPSF5_PONAB | Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUDT21 PE=2 SV=1 | 1 | 223 | 1.0E-68 |
| sp|O43809|CPSF5_HUMAN | Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1 | 1 | 223 | 1.0E-68 |
| sp|Q3ZCA2|CPSF5_BOVIN | Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1 | 1 | 223 | 1.0E-68 |
| sp|Q4KM65|CPSF5_RAT | Cleavage and polyadenylation specificity factor subunit 5 OS=Rattus norvegicus GN=Nudt21 PE=2 SV=1 | 1 | 223 | 2.0E-68 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8GXS3|CFIS2_ARATH | Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE=1 SV=1 | 29 | 226 | 5.0E-77 |
| sp|Q5RAI8|CPSF5_PONAB | Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUDT21 PE=2 SV=1 | 1 | 223 | 1.0E-68 |
| sp|O43809|CPSF5_HUMAN | Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1 | 1 | 223 | 1.0E-68 |
| sp|Q3ZCA2|CPSF5_BOVIN | Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1 | 1 | 223 | 1.0E-68 |
| sp|Q4KM65|CPSF5_RAT | Cleavage and polyadenylation specificity factor subunit 5 OS=Rattus norvegicus GN=Nudt21 PE=2 SV=1 | 1 | 223 | 2.0E-68 |
| sp|Q9CQF3|CPSF5_MOUSE | Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nudt21 PE=1 SV=1 | 1 | 223 | 2.0E-68 |
| sp|Q6DJE4|CPSF5_XENLA | Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1 | 1 | 223 | 2.0E-68 |
| sp|Q7T3C6|CPSF5_DANRE | Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio GN=cpsf5 PE=2 SV=1 | 1 | 223 | 6.0E-68 |
| sp|Q94AF0|CFIS1_ARATH | Pre-mRNA cleavage factor Im 25 kDa subunit 1 OS=Arabidopsis thaliana GN=CFIS1 PE=1 SV=1 | 29 | 225 | 7.0E-59 |
| sp|Q55E68|CPSF5_DICDI | Cleavage and polyadenylation specificity factor subunit 5 OS=Dictyostelium discoideum GN=cpsf5 PE=3 SV=1 | 35 | 225 | 2.0E-55 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005849 | mRNA cleavage factor complex | Yes |
| GO:0003729 | mRNA binding | Yes |
| GO:0006378 | mRNA polyadenylation | Yes |
| GO:0008152 | metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0009987 | cellular process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0043631 | RNA polyadenylation | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0031123 | RNA 3'-end processing | No |
| GO:0031124 | mRNA 3'-end processing | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0003723 | RNA binding | No |
| GO:0032991 | protein-containing complex | No |
| GO:0006397 | mRNA processing | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.6373 | 0.6093 | 0.0326 | 0.0763 | 0.543 | 0.0176 | 0.2021 | 0.0216 | 0.0354 | 0.1329 |
| Orthofinder run ID | 4 |
| Orthogroup | 1097 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1011 MSTIPPSALQSGLPPTIPLAFNSKQPDKVTLFPLSNYTFGVKETQPEEDPSVIARLKRLEEHYVEHGMRRTCEGI LVCHEHNHPHILMLQIANAFFKLPGDYLRPEDDEIDGFKARLDERLAPVGRIGEGEEAGDWEVGECLAQWWRPNF ETFMYPFVPAHVTRPKECKKLYFIHLPKTKVLSVPKNMKLLAVPLFELYDNTARYGPQLSAIPHILSRYNFEFVD ENGQAVAITPGSGAPDGYVPKTKVLVGDDAEMKEGTENGEQ* |
| Coding | >Hirsu2|1011 ATGTCTACCATCCCGCCGTCGGCGCTCCAGTCCGGGCTGCCGCCAACCATTCCCCTGGCCTTCAACTCGAAGCAG CCGGACAAGGTGACGCTCTTTCCCCTCTCCAACTACACCTTCGGCGTCAAGGAGACGCAGCCGGAAGAGGACCCG TCCGTCATCGCCCGCCTGAAGCGGCTGGAGGAGCACTACGTCGAGCACGGCATGCGCCGCACCTGCGAGGGCATC CTCGTCTGCCACGAGCACAACCACCCGCACATCCTGATGCTGCAGATCGCCAATGCCTTCTTCAAGCTCCCCGGT GACTACCTGCGGCCCGAGGACGACGAGATCGACGGCTTCAAGGCCCGTCTCGACGAGCGCCTGGCCCCGGTCGGC AGGATCGGCGAGGGCGAAGAGGCCGGCGACTGGGAGGTCGGCGAGTGTCTGGCCCAGTGGTGGCGGCCTAACTTC GAGACCTTCATGTACCCCTTCGTCCCCGCCCACGTCACGCGGCCCAAGGAATGCAAGAAGCTTTATTTCATTCAC CTGCCCAAGACCAAGGTCCTGAGCGTGCCCAAGAACATGAAGCTGCTGGCCGTGCCCCTCTTCGAGCTGTACGAC AATACGGCGCGGTACGGGCCGCAGCTCTCGGCCATCCCCCACATCCTGAGTCGCTACAACTTCGAGTTTGTCGAC GAGAACGGCCAGGCCGTCGCCATCACGCCCGGCTCCGGTGCGCCCGACGGCTACGTGCCCAAGACCAAGGTGCTG GTCGGCGACGATGCGGAGATGAAGGAGGGCACGGAGAACGGGGAGCAGTAA |
| Transcript | >Hirsu2|1011 ATGTCTACCATCCCGCCGTCGGCGCTCCAGTCCGGGCTGCCGCCAACCATTCCCCTGGCCTTCAACTCGAAGCAG CCGGACAAGGTGACGCTCTTTCCCCTCTCCAACTACACCTTCGGCGTCAAGGAGACGCAGCCGGAAGAGGACCCG TCCGTCATCGCCCGCCTGAAGCGGCTGGAGGAGCACTACGTCGAGCACGGCATGCGCCGCACCTGCGAGGGCATC CTCGTCTGCCACGAGCACAACCACCCGCACATCCTGATGCTGCAGATCGCCAATGCCTTCTTCAAGCTCCCCGGT GACTACCTGCGGCCCGAGGACGACGAGATCGACGGCTTCAAGGCCCGTCTCGACGAGCGCCTGGCCCCGGTCGGC AGGATCGGCGAGGGCGAAGAGGCCGGCGACTGGGAGGTCGGCGAGTGTCTGGCCCAGTGGTGGCGGCCTAACTTC GAGACCTTCATGTACCCCTTCGTCCCCGCCCACGTCACGCGGCCCAAGGAATGCAAGAAGCTTTATTTCATTCAC CTGCCCAAGACCAAGGTCCTGAGCGTGCCCAAGAACATGAAGCTGCTGGCCGTGCCCCTCTTCGAGCTGTACGAC AATACGGCGCGGTACGGGCCGCAGCTCTCGGCCATCCCCCACATCCTGAGTCGCTACAACTTCGAGTTTGTCGAC GAGAACGGCCAGGCCGTCGCCATCACGCCCGGCTCCGGTGCGCCCGACGGCTACGTGCCCAAGACCAAGGTGCTG GTCGGCGACGATGCGGAGATGAAGGAGGGCACGGAGAACGGGGAGCAGTAA |
| Gene | >Hirsu2|1011 ATGTCTACCATCCCGCCGTCGGCGCTCCAGTCCGGGCTGCCGCCAACCATTCCCCTGGCCTTCAACTCGAAGCAG CCGGACAAGGTGACGCTCTTTCCCCTCTCCAACTACACCTTCGGCGTCAAGGAGACGCAGCCGGAAGAGGACCCG TCCGTCATCGCCCGCCTGAAGCGGCTGGAGGAGCACTACGTCGAGCACGGCATGCGCCGCACCTGCGAGGGCATC CTCGTCTGCCACGAGCACAACCACCCGCACATCCTGATGCTGCAGATCGCCAATGCCTTCTTCAAGCTCCCCGGT GACTACCTGCGGCCCGAGGACGACGAGATCGACGGCTTCAAGGCCCGTCTCGACGAGCGCCTGGCCCCGGTCGGC AGGATCGGCGAGGGCGAAGAGGCCGGCGACTGGGAGGTCGGCGAGTGTCTGGCCCAGTGGTGGCGGCCTAACTTC GAGACCTTCATGTACCCCTTCGTCCCCGCCCACGTCACGCGGCCCAAGGAATGCAAGAAGCTTTATTTCATTCAC CTGCCCAAGACCAGTACGCGCTCGACATCTCTGCTTGCCCCCGACGTCCAGTGCTGACGACATGCCCAGAGGTCC TGAGCGTGCCCAAGAACATGAAGCTGCTGGCCGTGCCCCTCTTCGAGCTGTACGACAATACGGCGCGGTACGGGC CGCAGCTCTCGGCCATCCCCCACATCCTGAGTCGCTACAACTTCGAGTTTGTCGACGAGAACGGCCAGGCCGTCG CCATCACGCCCGGCTCCGGTGCGCCCGACGGCTACGTGCCCAAGACCAAGGTGCTGGTCGGCGACGATGCGGAGA TGAAGGAGGGCACGGAGAACGGGGAGCAGTAA |