© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|10108 |
| Gene name | |
| Location | Contig_79:16256..18543 |
| Strand | - |
| Gene length (bp) | 2287 |
| Transcript length (bp) | 2028 |
| Coding sequence length (bp) | 2028 |
| Protein length (aa) | 676 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02776 | TPP_enzyme_N | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 3.7E-37 | 94 | 276 |
| PF02775 | TPP_enzyme_C | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 1.3E-20 | 504 | 669 |
| PF00205 | TPP_enzyme_M | Thiamine pyrophosphate enzyme, central domain | 1.6E-09 | 298 | 404 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P20906|MDLC_PSEPU | Benzoylformate decarboxylase OS=Pseudomonas putida GN=mdlC PE=1 SV=2 | 100 | 657 | 1.0E-27 |
| sp|Q9HUR2|MDLC_PSEAE | Benzoylformate decarboxylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mdlC PE=3 SV=1 | 94 | 657 | 1.0E-16 |
| sp|P00893|ILVI_ECOLI | Acetolactate synthase isozyme 3 large subunit OS=Escherichia coli (strain K12) GN=ilvI PE=1 SV=2 | 145 | 671 | 4.0E-16 |
| sp|O61856|ILVBL_CAEEL | Acetolactate synthase-like protein OS=Caenorhabditis elegans GN=T26C12.1 PE=3 SV=2 | 139 | 671 | 1.0E-15 |
| sp|P40811|ILVI_SALTY | Acetolactate synthase isozyme 3 large subunit OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ilvI PE=3 SV=3 | 141 | 671 | 4.0E-13 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P20906|MDLC_PSEPU | Benzoylformate decarboxylase OS=Pseudomonas putida GN=mdlC PE=1 SV=2 | 100 | 657 | 1.0E-27 |
| sp|Q9HUR2|MDLC_PSEAE | Benzoylformate decarboxylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mdlC PE=3 SV=1 | 94 | 657 | 1.0E-16 |
| sp|P00893|ILVI_ECOLI | Acetolactate synthase isozyme 3 large subunit OS=Escherichia coli (strain K12) GN=ilvI PE=1 SV=2 | 145 | 671 | 4.0E-16 |
| sp|O61856|ILVBL_CAEEL | Acetolactate synthase-like protein OS=Caenorhabditis elegans GN=T26C12.1 PE=3 SV=2 | 139 | 671 | 1.0E-15 |
| sp|P40811|ILVI_SALTY | Acetolactate synthase isozyme 3 large subunit OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ilvI PE=3 SV=3 | 141 | 671 | 4.0E-13 |
| sp|Q57725|ILVB_METJA | Probable acetolactate synthase large subunit OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=ilvB PE=3 SV=1 | 141 | 656 | 5.0E-13 |
| sp|Q9P7P6|PDC3_SCHPO | Probable pyruvate decarboxylase C186.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC186.09 PE=3 SV=1 | 105 | 671 | 2.0E-12 |
| sp|P0CH62|CHDH_AZOSP | Cyclohexane-1,2-dione hydrolase OS=Azoarcus sp. PE=1 SV=1 | 101 | 671 | 3.0E-12 |
| sp|Q6NV04|ILVBL_DANRE | Acetolactate synthase-like protein OS=Danio rerio GN=ilvbl PE=2 SV=1 | 139 | 671 | 4.0E-11 |
| sp|P37251|ILVB_BACSU | Acetolactate synthase large subunit OS=Bacillus subtilis (strain 168) GN=ilvB PE=1 SV=4 | 145 | 588 | 2.0E-09 |
| sp|O08353|ILVB_METAO | Probable acetolactate synthase large subunit OS=Methanococcus aeolicus GN=ilvB PE=3 SV=1 | 145 | 656 | 2.0E-09 |
| sp|P27868|ILVB_ARTPT | Acetolactate synthase (Fragment) OS=Arthrospira platensis GN=ilvY PE=3 SV=1 | 94 | 591 | 2.0E-09 |
| sp|Q54970|POXB_STRPN | Pyruvate oxidase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=spxB PE=3 SV=2 | 293 | 671 | 3.0E-09 |
| sp|Q93PS3|XSC_DESTI | Sulfoacetaldehyde acetyltransferase OS=Desulfonispora thiosulfatigenes GN=xsc PE=1 SV=1 | 94 | 627 | 1.0E-07 |
| sp|Q7XKQ8|ILVB2_ORYSJ | Probable acetolactate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS2 PE=2 SV=2 | 153 | 657 | 2.0E-07 |
| sp|Q04789|ILVX_BACSU | Acetolactate synthase OS=Bacillus subtilis (strain 168) GN=alsS PE=2 SV=3 | 105 | 400 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000287 | magnesium ion binding | Yes |
| GO:0003824 | catalytic activity | Yes |
| GO:0030976 | thiamine pyrophosphate binding | Yes |
| GO:0050662 | coenzyme binding | No |
| GO:0046872 | metal ion binding | No |
| GO:1901681 | sulfur compound binding | No |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0048037 | cofactor binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0043167 | ion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043168 | anion binding | No |
| GO:0019842 | vitamin binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10108 MALLRRSGLVSPAALSRCRLPIIRPAPVSSLFTGARSPPATADTASPAPPEARNATGSRPAKCLSAGNPPALAVR HASTSALRKADPANANVYTASFAFFEAVWEAGITHCFVNLGSDHPSIIEAMVKGQREAKGKFPRIITCPNEMVAM SMADGYARLTGKPQCVIVHVDVGTQGLGAAVHNSSTGRAPVLLFAGLSPFTLDGELRGSRTEFIHWIQDVPDQKQ IVSQYCRYSAEIKTGTNVKQMVNRALQFAKSDPQGPVYLCGAREVMEADIEPYSLRQGDWDPVQLGGLPQRGIDS IADALAGAERPLVVTAYGGRNHKVPGALVELANTVKGLQVVDCGGSDMCFPADHPAWRGIRFGVDDAITQADAIL VVDCDVPWIPTLCRPRKDAKIFHVDIDPLKQQMPLFYIDAGARFRADALTSIEQLTAALKTGPAADKLRARDTTQ AAARVEREYKELLDGIAQKAKPLEDGSFGTGYLSRTLKQMCPEDTLWAVEAVTNTGFVHNNLQPTTPGSWINCGG GGLGWSGGGALGIKLATDAESGGKGKFVVQIVGDGTYLFSVPGSVYWISKRYKIPVLTIVLNNKGWHAPRRSLLL VHPDGLGSKASNEEANISFDPVPDYAGIAKAAADGDVFAAKVSRASELEGVLREAIAKVQAGQTAVVDCSVVPGC * |
| Coding | >Hirsu2|10108 ATGGCCCTGCTCCGGCGCTCTGGACTCGTCTCACCGGCGGCCTTGTCGAGGTGCCGACTGCCGATCATCCGCCCC GCCCCGGTCTCGTCCCTCTTCACCGGCGCCCGCAGTCCGCCCGCGACGGCCGACACGGCCTCCCCCGCCCCGCCC GAAGCCCGAAACGCCACTGGCAGCCGACCGGCGAAATGTCTCTCGGCCGGCAACCCTCCCGCCCTGGCTGTCCGA CACGCCTCCACTTCGGCCCTGCGGAAGGCTGACCCGGCCAACGCCAACGTCTACACGGCCTCGTTTGCCTTCTTC GAGGCTGTCTGGGAGGCCGGCATCACCCACTGTTTTGTCAACCTCGGCTCCGATCATCCCAGCATCATCGAGGCC ATGGTCAAGGGTCAGCGCGAGGCCAAGGGCAAATTCCCGCGCATCATCACCTGCCCAAACGAGATGGTAGCCATG TCTATGGCAGACGGCTACGCTCGGCTGACGGGCAAGCCCCAATGCGTCATCGTCCACGTTGATGTCGGCACGCAG GGTCTCGGGGCGGCGGTGCACAACTCGTCCACCGGCCGCGCCCCTGTCCTCCTCTTTGCTGGCCTGTCCCCCTTT ACACTAGACGGCGAGCTCCGCGGGAGCCGTACCGAATTTATCCATTGGATCCAGGACGTGCCCGACCAGAAGCAG ATTGTGTCCCAGTACTGCCGCTACTCGGCCGAAATTAAGACGGGAACCAATGTTAAGCAGATGGTCAACCGCGCC CTCCAATTTGCCAAGTCGGACCCTCAAGGCCCCGTTTACCTATGCGGCGCCCGCGAGGTTATGGAGGCCGATATC GAGCCCTACTCGCTCCGGCAGGGCGACTGGGATCCGGTGCAGCTCGGAGGCCTCCCCCAGCGCGGCATCGATAGC ATCGCCGACGCCCTGGCCGGCGCCGAGCGCCCCCTCGTCGTGACCGCCTATGGCGGCAGGAACCACAAGGTGCCC GGAGCCCTTGTCGAGCTCGCCAATACGGTCAAGGGTCTGCAGGTGGTGGACTGCGGGGGCAGCGATATGTGCTTT CCGGCCGACCACCCGGCCTGGCGAGGCATCCGGTTCGGCGTCGACGATGCCATTACGCAGGCCGACGCCATCCTC GTCGTCGACTGCGACGTGCCGTGGATCCCTACGCTGTGCAGGCCGCGCAAAGATGCCAAGATCTTCCACGTCGAC ATCGACCCCCTTAAGCAGCAGATGCCCCTATTTTACATTGATGCGGGCGCGAGATTCCGAGCCGACGCCCTGACA TCGATCGAGCAGTTGACGGCGGCGCTCAAGACGGGCCCGGCCGCCGACAAGCTGCGGGCGCGGGACACGACGCAG GCGGCGGCACGGGTGGAGCGCGAGTACAAGGAGCTCCTGGACGGCATCGCGCAAAAGGCCAAGCCTCTCGAGGAC GGCAGCTTTGGGACGGGCTACCTGTCGCGGACGCTGAAGCAGATGTGTCCCGAGGACACGCTGTGGGCCGTCGAG GCCGTGACCAACACAGGGTTCGTGCACAACAACCTACAGCCGACGACGCCGGGGTCGTGGATCAACTGCGGCGGC GGCGGCCTCGGCTGGTCCGGGGGCGGCGCGCTGGGCATCAAGCTCGCGACGGACGCCGAGAGCGGCGGCAAGGGC AAGTTTGTGGTGCAGATTGTCGGGGACGGCACCTACCTGTTTTCGGTGCCGGGCAGCGTATACTGGATCTCGAAG AGATACAAGATCCCCGTGCTGACCATTGTGCTCAACAACAAGGGATGGCACGCTCCGAGGCGGTCGCTGCTGTTG GTGCACCCCGACGGGCTGGGGTCCAAGGCGAGCAACGAGGAAGCCAACATCTCGTTCGACCCGGTGCCGGACTAT GCGGGCATCGCCAAGGCGGCGGCGGACGGGGACGTGTTCGCGGCCAAGGTTTCGCGGGCGTCGGAGCTGGAGGGG GTGCTGAGGGAGGCGATTGCCAAGGTGCAGGCGGGCCAGACGGCGGTGGTGGACTGCTCGGTGGTGCCGGGCTGC TGA |
| Transcript | >Hirsu2|10108 ATGGCCCTGCTCCGGCGCTCTGGACTCGTCTCACCGGCGGCCTTGTCGAGGTGCCGACTGCCGATCATCCGCCCC GCCCCGGTCTCGTCCCTCTTCACCGGCGCCCGCAGTCCGCCCGCGACGGCCGACACGGCCTCCCCCGCCCCGCCC GAAGCCCGAAACGCCACTGGCAGCCGACCGGCGAAATGTCTCTCGGCCGGCAACCCTCCCGCCCTGGCTGTCCGA CACGCCTCCACTTCGGCCCTGCGGAAGGCTGACCCGGCCAACGCCAACGTCTACACGGCCTCGTTTGCCTTCTTC GAGGCTGTCTGGGAGGCCGGCATCACCCACTGTTTTGTCAACCTCGGCTCCGATCATCCCAGCATCATCGAGGCC ATGGTCAAGGGTCAGCGCGAGGCCAAGGGCAAATTCCCGCGCATCATCACCTGCCCAAACGAGATGGTAGCCATG TCTATGGCAGACGGCTACGCTCGGCTGACGGGCAAGCCCCAATGCGTCATCGTCCACGTTGATGTCGGCACGCAG GGTCTCGGGGCGGCGGTGCACAACTCGTCCACCGGCCGCGCCCCTGTCCTCCTCTTTGCTGGCCTGTCCCCCTTT ACACTAGACGGCGAGCTCCGCGGGAGCCGTACCGAATTTATCCATTGGATCCAGGACGTGCCCGACCAGAAGCAG ATTGTGTCCCAGTACTGCCGCTACTCGGCCGAAATTAAGACGGGAACCAATGTTAAGCAGATGGTCAACCGCGCC CTCCAATTTGCCAAGTCGGACCCTCAAGGCCCCGTTTACCTATGCGGCGCCCGCGAGGTTATGGAGGCCGATATC GAGCCCTACTCGCTCCGGCAGGGCGACTGGGATCCGGTGCAGCTCGGAGGCCTCCCCCAGCGCGGCATCGATAGC ATCGCCGACGCCCTGGCCGGCGCCGAGCGCCCCCTCGTCGTGACCGCCTATGGCGGCAGGAACCACAAGGTGCCC GGAGCCCTTGTCGAGCTCGCCAATACGGTCAAGGGTCTGCAGGTGGTGGACTGCGGGGGCAGCGATATGTGCTTT CCGGCCGACCACCCGGCCTGGCGAGGCATCCGGTTCGGCGTCGACGATGCCATTACGCAGGCCGACGCCATCCTC GTCGTCGACTGCGACGTGCCGTGGATCCCTACGCTGTGCAGGCCGCGCAAAGATGCCAAGATCTTCCACGTCGAC ATCGACCCCCTTAAGCAGCAGATGCCCCTATTTTACATTGATGCGGGCGCGAGATTCCGAGCCGACGCCCTGACA TCGATCGAGCAGTTGACGGCGGCGCTCAAGACGGGCCCGGCCGCCGACAAGCTGCGGGCGCGGGACACGACGCAG GCGGCGGCACGGGTGGAGCGCGAGTACAAGGAGCTCCTGGACGGCATCGCGCAAAAGGCCAAGCCTCTCGAGGAC GGCAGCTTTGGGACGGGCTACCTGTCGCGGACGCTGAAGCAGATGTGTCCCGAGGACACGCTGTGGGCCGTCGAG GCCGTGACCAACACAGGGTTCGTGCACAACAACCTACAGCCGACGACGCCGGGGTCGTGGATCAACTGCGGCGGC GGCGGCCTCGGCTGGTCCGGGGGCGGCGCGCTGGGCATCAAGCTCGCGACGGACGCCGAGAGCGGCGGCAAGGGC AAGTTTGTGGTGCAGATTGTCGGGGACGGCACCTACCTGTTTTCGGTGCCGGGCAGCGTATACTGGATCTCGAAG AGATACAAGATCCCCGTGCTGACCATTGTGCTCAACAACAAGGGATGGCACGCTCCGAGGCGGTCGCTGCTGTTG GTGCACCCCGACGGGCTGGGGTCCAAGGCGAGCAACGAGGAAGCCAACATCTCGTTCGACCCGGTGCCGGACTAT GCGGGCATCGCCAAGGCGGCGGCGGACGGGGACGTGTTCGCGGCCAAGGTTTCGCGGGCGTCGGAGCTGGAGGGG GTGCTGAGGGAGGCGATTGCCAAGGTGCAGGCGGGCCAGACGGCGGTGGTGGACTGCTCGGTGGTGCCGGGCTGC TGA |
| Gene | >Hirsu2|10108 ATGGCCCTGCTCCGGCGCTCTGGACTCGTCTCACCGGCGGCCTTGTCGAGGTGCCGACTGCCGATCATCCGCCCC GCCCCGGTCTCGTCCCTCTTCACCGGCGCCCGCAGTCCGCCCGCGACGGCCGACACGGCCTCCCCCGCCCCGCCC GAAGCCCGAAACGCCACTGGCAGCCGACCGGCGAAATGTCTCTCGGCCGGCAACCCTCCCGCCCTGGCTGTCCGA CACGCCTCCACTTCGGCCCTGCGGAAGGCTGACCCGGCCAACGCCAACGTCTACACGGCCTCGTTTGCCTTCTTC GAGGCTGTCTGGGAGGCCGGCATCACCCACTGTTTTGTCAACCTCGGCTCCGATCATCCCAGCATCATCGAGGCC ATGGTCAAGGGTCAGCGCGAGGCCAAGGGCAAATTCCCGCGCATCATCACCTGCCCAAACGAGGTATGAGCCTGG CTCACCATTTGTCCCTGACCCTGCCCCTACCCCCATGCTCCCCCGATCCGCGTCCATCTCGACAAGCAAGACCTT GGTCTGTGGGATTCGACGAGACGGGCAGAGTGGCGCGATGAGGACTGGCCGACGGAGACTGGCTGACGCTTCCGC CCGTACGTGTTCACGTCTAGATGGTAGCCATGTCTATGGCAGACGGCTACGCTCGGCTGACGGGCAAGCCCCAAT GCGTCATCGTCCACGTTGATGTCGGCACGCAGGGTCTCGGGGCGGCGGTGCACAACTCGTCCACCGGCCGCGCCC CTGTCCTCCTCTTTGCTGGCCTGTCCCCCTTTACACTAGACGGCGAGCTCCGCGGGAGCCGTACCGAATTTATCC ATTGGATCCAGGACGTGCCCGACCAGAAGCAGATTGTGTCCCAGTACTGCCGCTACTCGGCCGAAATTAAGACGG GAACCAATGTTAAGCAGATGGTCAACCGCGCCCTCCAATTTGCCAAGTCGGACCCTCAAGGCCCCGTTTACCTAT GCGGCGCCCGCGAGGTTATGGAGGCCGATATCGAGCCCTACTCGCTCCGGCAGGGCGACTGGGATCCGGTGCAGC TCGGAGGCCTCCCCCAGCGCGGCATCGATAGCATCGCCGACGCCCTGGCCGGCGCCGAGCGCCCCCTCGTCGTGA CCGCCTATGGCGGCAGGAACCACAAGGTGCCCGGAGCCCTTGTCGAGCTCGCCAATACGGTCAAGGGTCTGCAGG TGGTGGACTGCGGGGGCAGCGATATGTGCTTTCCGGCCGACCACCCGGCCTGGCGAGGCATCCGGTTCGGCGTCG ACGATGCCATTACGCAGGCCGACGCCATCCTCGTCGTCGACTGCGACGTGCCGTGGATCCCTACGCTGTGCAGGC CGCGCAAAGATGCCAAGATCTTCCACGTCGACATCGACCCCCTTAAGCAGCAGATGCCCCTATTTTACATTGATG CGGGCGCGAGATTCCGAGCCGACGCCCTGACATCGATCGAGCAGTTGACGGCGGCGCTCAAGACGGGCCCGGCCG CCGACAAGCTGCGGGCGCGGGACACGACGCAGGCGGCGGCACGGGTGGAGCGCGAGTACAAGGAGCTCCTGGACG GCATCGCGCAAAAGGCCAAGCCTCTCGAGGACGGCAGCTTTGGGACGGGCTACCTGTCGCGGACGCTGAAGCAGA TGTGTCCCGAGGACACGCTGTGGGCCGTCGAGGCCGTGACCAACACAGGGTTCGTGCACAACAACCTACAGCCGA CGACGCCGGGGTCGTGGATCAACTGCGGCGGCGGCGGCCTCGGCTGGTCCGGGGGCGGCGCGCTGGGCATCAAGC TCGCGACGGACGCCGAGAGCGGCGGCAAGGGCAAGTTTGTGGTGCAGATTGTCGGGGACGGCACCTACCTGTTTT CGGTGCCGGGCAGCGTATACTGGATCTCGAAGAGATACAAGATCCCCGTGCTGACCATTGTGCTCAACAACAAGG GTGAGTCTTGTCCGTCGTCGTGGCCGTCGAAGGCGGGTGGTGAGAGATGCTGATGACTGTGCCCTACTTTCTTGC AGGATGGCACGCTCCGAGGCGGTCGCTGCTGTTGGTGCACCCCGACGGGCTGGGGTCCAAGGCGAGCAACGAGGA AGCCAACATCTCGTTCGACCCGGTGCCGGACTATGCGGGCATCGCCAAGGCGGCGGCGGACGGGGACGTGTTCGC GGCCAAGGTTTCGCGGGCGTCGGAGCTGGAGGGGGTGCTGAGGGAGGCGATTGCCAAGGTGCAGGCGGGCCAGAC GGCGGTGGTGGACTGCTCGGTGGTGCCGGGCTGCTGA |