© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|1007 |
| Gene name | |
| Location | Contig_1208:5662..7295 |
| Strand | - |
| Gene length (bp) | 1633 |
| Transcript length (bp) | 1386 |
| Coding sequence length (bp) | 1386 |
| Protein length (aa) | 462 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.5249 | 0.3383 | 0.4507 | 0.1626 | 0.3179 | 0.3089 | 0.289 | 0.2262 | 0.2167 | 0.2412 |
| Orthofinder run ID | 4 |
| Orthogroup | 4770 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1007 MAVPSVILIRSLLQQQHQLPTFPIGIVYNASPRFLLLLGPLTFLHALARCLPVVSRARRSWSRSAPTSPWGAYTI RPCSARHAIGLGPTAGYTLAPKTEKTGSSMPSAEESWGSPAAREDRLSFLDEITPKQMAGYRPDQIATILRQREN VQAAIELQQLRSDSSEIVTRRPCSTAFKSAPDPLEYRKPWVRAIHEECRYRICSRCRPGLADRAFISLNAVANGE IPPTAAVGFGFHVMGERPVINAEILKNMGRRPASPVKNGESGLDDSVLKAQAPAPQEHPRASPGQASFRSRESIR QLFEDEIDAPATGSGLSIHNHVNRPQHQGSGSDSPGCLKHSSRCGNLGKYSDAKDVSNPPSCRPHPLTPPPSPWP GEGKAKPTEPDQDKLEDKTSLTKKIGSSSTPTNPTIPPKDLKLDSSKTCAVDELEMHWLAVGRASSDTPRPKEST LPAAMTPPPPL* |
| Coding | >Hirsu2|1007 ATGGCCGTGCCATCTGTTATCCTCATTCGGTCGCTTCTACAGCAGCAGCACCAGCTACCAACATTCCCTATCGGC ATAGTTTACAACGCATCTCCTCGTTTCCTCCTCCTTCTTGGCCCGCTGACCTTCCTGCATGCCTTGGCACGATGT CTCCCCGTGGTCTCGCGGGCCCGCAGAAGCTGGAGCCGCAGTGCACCCACCTCACCATGGGGCGCATATACGATT CGACCATGCTCTGCGCGGCATGCCATCGGCCTGGGCCCAACGGCTGGATATACGCTTGCTCCCAAGACCGAGAAG ACCGGATCGAGCATGCCATCTGCCGAGGAGAGCTGGGGAAGCCCAGCAGCCCGCGAAGATCGGCTCAGTTTTCTC GACGAGATAACGCCTAAGCAAATGGCCGGGTACCGGCCCGACCAGATAGCCACCATCTTGCGCCAACGCGAGAAT GTTCAGGCAGCTATTGAGCTGCAGCAATTGCGAAGCGACAGCAGCGAAATCGTCACGCGTCGCCCCTGCTCGACC GCTTTCAAGAGCGCCCCAGACCCCCTCGAATACAGGAAACCGTGGGTTCGGGCCATCCATGAAGAGTGCCGGTAC CGCATCTGTTCTCGCTGTCGCCCTGGCCTGGCAGACAGAGCCTTCATCAGCCTCAATGCCGTGGCCAATGGCGAG ATCCCCCCAACAGCTGCTGTCGGCTTTGGCTTCCATGTCATGGGCGAGCGACCTGTTATCAACGCCGAAATCCTC AAGAATATGGGCCGCCGCCCTGCCTCTCCGGTCAAAAATGGAGAGTCTGGCCTCGACGACTCCGTCCTCAAAGCG CAGGCGCCTGCACCGCAGGAACACCCGCGGGCCTCGCCAGGCCAAGCCTCTTTCAGATCTCGCGAGAGCATCAGA CAGTTGTTTGAAGATGAGATCGACGCCCCAGCGACCGGCTCGGGCCTCAGCATCCATAATCATGTAAACAGACCG CAGCACCAAGGCTCGGGAAGCGACAGCCCCGGTTGTTTGAAGCATTCCTCCCGGTGTGGAAATTTGGGCAAGTAT AGCGATGCCAAGGATGTCTCAAACCCGCCTTCCTGCCGACCACACCCCTTGACTCCTCCTCCCTCACCCTGGCCA GGGGAAGGCAAGGCAAAGCCAACGGAGCCAGACCAAGACAAGCTGGAGGACAAGACTTCTTTGACCAAGAAAATC GGCTCAAGTTCGACACCGACGAATCCAACAATTCCTCCCAAAGACCTCAAGCTTGACAGTAGCAAGACCTGTGCT GTGGATGAACTTGAAATGCATTGGCTGGCCGTGGGAAGGGCCAGCAGTGACACCCCACGCCCCAAGGAAAGCACT CTCCCCGCCGCGATGACGCCGCCGCCGCCACTTTAA |
| Transcript | >Hirsu2|1007 ATGGCCGTGCCATCTGTTATCCTCATTCGGTCGCTTCTACAGCAGCAGCACCAGCTACCAACATTCCCTATCGGC ATAGTTTACAACGCATCTCCTCGTTTCCTCCTCCTTCTTGGCCCGCTGACCTTCCTGCATGCCTTGGCACGATGT CTCCCCGTGGTCTCGCGGGCCCGCAGAAGCTGGAGCCGCAGTGCACCCACCTCACCATGGGGCGCATATACGATT CGACCATGCTCTGCGCGGCATGCCATCGGCCTGGGCCCAACGGCTGGATATACGCTTGCTCCCAAGACCGAGAAG ACCGGATCGAGCATGCCATCTGCCGAGGAGAGCTGGGGAAGCCCAGCAGCCCGCGAAGATCGGCTCAGTTTTCTC GACGAGATAACGCCTAAGCAAATGGCCGGGTACCGGCCCGACCAGATAGCCACCATCTTGCGCCAACGCGAGAAT GTTCAGGCAGCTATTGAGCTGCAGCAATTGCGAAGCGACAGCAGCGAAATCGTCACGCGTCGCCCCTGCTCGACC GCTTTCAAGAGCGCCCCAGACCCCCTCGAATACAGGAAACCGTGGGTTCGGGCCATCCATGAAGAGTGCCGGTAC CGCATCTGTTCTCGCTGTCGCCCTGGCCTGGCAGACAGAGCCTTCATCAGCCTCAATGCCGTGGCCAATGGCGAG ATCCCCCCAACAGCTGCTGTCGGCTTTGGCTTCCATGTCATGGGCGAGCGACCTGTTATCAACGCCGAAATCCTC AAGAATATGGGCCGCCGCCCTGCCTCTCCGGTCAAAAATGGAGAGTCTGGCCTCGACGACTCCGTCCTCAAAGCG CAGGCGCCTGCACCGCAGGAACACCCGCGGGCCTCGCCAGGCCAAGCCTCTTTCAGATCTCGCGAGAGCATCAGA CAGTTGTTTGAAGATGAGATCGACGCCCCAGCGACCGGCTCGGGCCTCAGCATCCATAATCATGTAAACAGACCG CAGCACCAAGGCTCGGGAAGCGACAGCCCCGGTTGTTTGAAGCATTCCTCCCGGTGTGGAAATTTGGGCAAGTAT AGCGATGCCAAGGATGTCTCAAACCCGCCTTCCTGCCGACCACACCCCTTGACTCCTCCTCCCTCACCCTGGCCA GGGGAAGGCAAGGCAAAGCCAACGGAGCCAGACCAAGACAAGCTGGAGGACAAGACTTCTTTGACCAAGAAAATC GGCTCAAGTTCGACACCGACGAATCCAACAATTCCTCCCAAAGACCTCAAGCTTGACAGTAGCAAGACCTGTGCT GTGGATGAACTTGAAATGCATTGGCTGGCCGTGGGAAGGGCCAGCAGTGACACCCCACGCCCCAAGGAAAGCACT CTCCCCGCCGCGATGACGCCGCCGCCGCCACTTTAA |
| Gene | >Hirsu2|1007 ATGGCCGTGCCATCTGTTATCCTCATTCGGTCGCTTCTACAGCAGCAGCACCAGCTACCAACATTCCCTATCGGC ATAGTTTACAACGCATCTCCTCGTTTCCTCCTCCTTCTTGGCCCGCTGACCTTCCTGCATGCCTTGGCACGATGT CTCCCCGTGGTCTCGCGGGCCCGCAGAAGCTGGAGCCGCAGTGCACCCACCTCACCATGGGGCGCATATACGATT CGACCATGCTCTGCGCGGCATGCCATCGGCCTGGGCCCAACGGCTGGATATACGCTTGCTCCCAAGACCGAGAAG ACCGGATCGAGCATGCCATCTGCCGAGGAGAGCTGGTAATCGGGCGCACCCACCTCCTCATCTTTCGTCCCAACT GGCTGACCTTCCTGGACGCTAACCGTCTTGCCGCGGGCGAGCTTCGATGTTTTGGGCCGCGACTTTTCGGAGCAG CTGACGATCAGAAGGGGAAGCCCAGCAGCCCGCGAAGATCGGCTCAGTTTTCTCGACGAGATAACGCCTAAGCAA ATGGCCGGGTACCGGCCCGACCAGATAGCCACCATCTTGCGCCAACGCGAGAATGTGCGTGCTTGCTCCTTACAG CCCGCCCTCTGAACCTGGCGCTTACCGGCGCGGGCAGGTTCAGGCAGCTATTGAGCTGCAGCAATTGCGAAGCGA CAGCAGCGAAATCGTCACGCGTCGCCCCTGCTCGACCGCTTTCAAGAGCGCCCCAGACCCCCTCGAATACAGGAA ACCGTGGGTTCGGGCCATCCATGAAGAGTGCCGGTACCGCATCTGTTCTCGCTGTCGCCCTGGCCTGGCAGACAG AGCCTTCATCAGCCTCAATGCCGTGGCCAATGGCGAGATCCCCCCAACAGCTGCTGTCGGCTTTGGCTTCCATGT CATGGGCGAGCGACCTGTTATCAACGCCGAAATCCTCAAGAATATGGGCCGCCGCCCTGCCTCTCCGGTCAAAAA TGGAGAGTCTGGCCTCGACGACTCCGTCCTCAAAGCGCAGGCGCCTGCACCGCAGGAACACCCGCGGGCCTCGCC AGGCCAAGCCTCTTTCAGATCTCGCGAGAGCATCAGACAGTTGTTTGAAGATGAGATCGACGCCCCAGCGACCGG CTCGGGCCTCAGCATCCATAATCATGTAAACAGACCGCAGCACCAAGGCTCGGGAAGCGACAGCCCCGGTTGTTT GAAGCATTCCTCCCGGTGTGGAAATTTGGGCAAGTATAGCGATGCCAAGGATGTCTCAAACCCGCCTTCCTGCCG ACCACACCCCTTGACTCCTCCTCCCTCACCCTGGCCAGGGGAAGGCAAGGCAAAGCCAACGGAGCCAGACCAAGA CAAGCTGGAGGACAAGACTTCTTTGACCAAGAAAATCGGGCAAGTCGTCGTCGCGAAGATTTTCGTTCGGCGCTA CCTGCGGTCACTAATAAAACGTAGCTCAAGTTCGACACCGACGAATCCAACAATTCCTCCCAAAGACCTCAAGCT TGACAGTAGCAAGACCTGTGCTGTGGATGAACTTGAAATGCATTGGCTGGCCGTGGGAAGGGCCAGCAGTGACAC CCCACGCCCCAAGGAAAGCACTCTCCCCGCCGCGATGACGCCGCCGCCGCCACTTTAA |