Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|10060
Gene name
LocationContig_780:10721..11431
Strand+
Gene length (bp)710
Transcript length (bp)633
Coding sequence length (bp)633
Protein length (aa) 211

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04148 Erv26 Transmembrane adaptor Erv26 2.7E-90 1 195

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P38869|SVP26_YEAST Protein SVP26 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SVP26 PE=1 SV=1 3 202 1.0E-55
sp|Q1MTR8|SVP26_SCHPO Protein svp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=svp26 PE=3 SV=1 1 171 5.0E-40
sp|Q6UWH6|TX261_HUMAN Protein TEX261 OS=Homo sapiens GN=TEX261 PE=2 SV=1 1 198 2.0E-34
sp|Q5BJW3|TX261_RAT Protein TEX261 OS=Rattus norvegicus GN=Tex261 PE=2 SV=1 1 198 6.0E-34
sp|Q62302|TX261_MOUSE Protein TEX261 OS=Mus musculus GN=Tex261 PE=2 SV=1 1 198 6.0E-34
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[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P38869|SVP26_YEAST Protein SVP26 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SVP26 PE=1 SV=1 3 202 1.0E-55
sp|Q1MTR8|SVP26_SCHPO Protein svp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=svp26 PE=3 SV=1 1 171 5.0E-40
sp|Q6UWH6|TX261_HUMAN Protein TEX261 OS=Homo sapiens GN=TEX261 PE=2 SV=1 1 198 2.0E-34
sp|Q5BJW3|TX261_RAT Protein TEX261 OS=Rattus norvegicus GN=Tex261 PE=2 SV=1 1 198 6.0E-34
sp|Q62302|TX261_MOUSE Protein TEX261 OS=Mus musculus GN=Tex261 PE=2 SV=1 1 198 6.0E-34
sp|Q5RFE0|TX261_PONAB Protein TEX261 OS=Pongo abelii GN=TEX261 PE=2 SV=1 1 198 4.0E-33
sp|Q58DA4|TX261_BOVIN Protein TEX261 OS=Bos taurus GN=TEX261 PE=2 SV=1 24 168 1.0E-30
sp|Q54ER8|TX261_DICDI Protein TEX261 homolog OS=Dictyostelium discoideum GN=DDB_G0291374 PE=3 SV=1 3 209 1.0E-25
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 16 0.5

Transmembrane Domains

Domain # Start End Length
1 10 31 21
2 44 61 17
3 65 82 17
4 95 112 17
5 137 159 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|10060
MWILPLIGYAGAVTGFCFLTLAIASGLYYLSELVEEHTVMAKRLLTRLIYTVIAVQLALWLVDGLPFWATIVGVL
AHVVYLGNMRRFPFVKLSDPLFLVACVLVLLDHYVWFKYFSNSQTRAYQRSSYYDQVDIPSFTMIASYFGLCVWL
VPFALFVSLSAGDNVLPTMGTEPVRGVDGKNRHQGMVKAVVDYVRGTIGDMAGSSSMGRP*
Coding >Hirsu2|10060
ATGTGGATTTTGCCGCTCATCGGCTACGCCGGGGCCGTGACGGGCTTCTGCTTCCTCACCCTGGCCATCGCCTCC
GGACTGTACTACCTGTCGGAGCTGGTCGAGGAGCACACCGTCATGGCCAAGCGGCTGCTGACGCGCCTGATCTAC
ACCGTCATCGCCGTCCAGCTCGCCCTCTGGCTGGTCGACGGCCTCCCCTTTTGGGCCACCATCGTCGGCGTCCTG
GCCCACGTCGTCTATCTCGGCAACATGCGGCGCTTCCCTTTTGTGAAGCTGTCGGACCCGCTCTTCCTCGTCGCC
TGCGTCCTTGTCCTCCTCGACCACTACGTCTGGTTCAAGTACTTCTCCAACAGCCAGACGCGCGCCTACCAGCGC
TCGTCCTACTACGACCAGGTCGACATCCCCTCCTTCACCATGATCGCCTCATACTTTGGCCTCTGCGTCTGGCTC
GTCCCCTTTGCCCTGTTCGTCAGCCTGTCGGCCGGCGACAACGTCTTGCCGACCATGGGCACCGAGCCGGTGCGC
GGTGTCGACGGCAAAAACAGGCACCAGGGCATGGTCAAGGCCGTTGTCGACTACGTCCGCGGCACCATCGGCGAC
ATGGCCGGCTCTTCGAGCATGGGGCGGCCGTGA
Transcript >Hirsu2|10060
ATGTGGATTTTGCCGCTCATCGGCTACGCCGGGGCCGTGACGGGCTTCTGCTTCCTCACCCTGGCCATCGCCTCC
GGACTGTACTACCTGTCGGAGCTGGTCGAGGAGCACACCGTCATGGCCAAGCGGCTGCTGACGCGCCTGATCTAC
ACCGTCATCGCCGTCCAGCTCGCCCTCTGGCTGGTCGACGGCCTCCCCTTTTGGGCCACCATCGTCGGCGTCCTG
GCCCACGTCGTCTATCTCGGCAACATGCGGCGCTTCCCTTTTGTGAAGCTGTCGGACCCGCTCTTCCTCGTCGCC
TGCGTCCTTGTCCTCCTCGACCACTACGTCTGGTTCAAGTACTTCTCCAACAGCCAGACGCGCGCCTACCAGCGC
TCGTCCTACTACGACCAGGTCGACATCCCCTCCTTCACCATGATCGCCTCATACTTTGGCCTCTGCGTCTGGCTC
GTCCCCTTTGCCCTGTTCGTCAGCCTGTCGGCCGGCGACAACGTCTTGCCGACCATGGGCACCGAGCCGGTGCGC
GGTGTCGACGGCAAAAACAGGCACCAGGGCATGGTCAAGGCCGTTGTCGACTACGTCCGCGGCACCATCGGCGAC
ATGGCCGGCTCTTCGAGCATGGGGCGGCCGTGA
Gene >Hirsu2|10060
ATGTGGATTTTGCCGCTCATCGGCTACGCCGGGGCCGTGACGGGCTTCTGCTTCCTCACCCTGGCCATCGCCTCC
GGACTGTACTACCTGTCGGAGCTGGTCGAGGAGCACACCGTCATGGCCAAGCGGCTGCTGACGCGCCTGATCTAC
ACCGTCATCGCCGTCCAGCTCGCCCTCTGGCTGGTCGACGGCCTCCCCTTTTGGGCCACCATCGTCGGCGTCCTG
GCCCACGTCGTCTATCTCGGCAACATGCGGCGCTTCCCTTTTGTGAAGCTGTCGGACCCGCTCTTCCTCGTCGCC
TGCGGTAAGCCCACGTGCCGAGAAGGCGAGACAGAGGGGAGACGGACGGATGCGCTGACAGGCAGTCCTTCCGCG
GTGCAGTCCTTGTCCTCCTCGACCACTACGTCTGGTTCAAGTACTTCTCCAACAGCCAGACGCGCGCCTACCAGC
GCTCGTCCTACTACGACCAGGTCGACATCCCCTCCTTCACCATGATCGCCTCATACTTTGGCCTCTGCGTCTGGC
TCGTCCCCTTTGCCCTGTTCGTCAGCCTGTCGGCCGGCGACAACGTCTTGCCGACCATGGGCACCGAGCCGGTGC
GCGGTGTCGACGGCAAAAACAGGCACCAGGGCATGGTCAAGGCCGTTGTCGACTACGTCCGCGGCACCATCGGCG
ACATGGCCGGCTCTTCGAGCATGGGGCGGCCGTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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