Protein ID | Hirsu2|1006 |
Gene name | |
Location | Contig_1208:3854..5199 |
Strand | + |
Gene length (bp) | 1345 |
Transcript length (bp) | 1191 |
Coding sequence length (bp) | 1191 |
Protein length (aa) | 397 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF20463 | PDH_C | Prephenate dehydrogenase, dimerization domain | 3.7E-07 | 131 | 231 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O60078|TYR1_SCHPO | Probable prephenate dehydrogenase [NADP(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tyr1 PE=2 SV=1 | 8 | 392 | 1.0E-154 |
sp|P20049|TYR1_YEAST | Prephenate dehydrogenase [NADP(+)] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TYR1 PE=1 SV=2 | 15 | 396 | 6.0E-146 |
sp|Q58029|Y612_METJA | Probable arogenate/prephenate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0612 PE=3 SV=1 | 16 | 204 | 8.0E-11 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | Peroxisomal targeting signal | 0.5569 | 0.2395 | 0.0849 | 0.2327 | 0.2462 | 0.0534 | 0.09 | 0.2257 | 0.0902 | 0.4559 |
Orthofinder run ID | 4 |
Orthogroup | 4766 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|1006 MLRCSVAEAPFLQNKIEICRNGHLVSRASDFIIYSVEAAIIDRVIARYGPSTKMGAIVGGQTSCKSPEIAAFEAY LPADVSIVSCHSLHGPGVDPHNQPLVIIQHRAPDAAVRTVEMVLACLRSQFVRLTAREHDRITADTQAVTHAAFL SMGKAWHANRQFPWELSRYVGGIENVKINTMLRIYGQKWHVYAGLAILNPEARKQVAQYAESVTQLYTLMLEGDV DSLRERVHAARDKVFGPPEAWAARPPLIEPSVLPSFSLGAPADAAPRPNNHLSLLAMVDCWAALGIVPYEHMLCS TPLFRLRLGVTEHLFRSPSLLDEALRTAVDDKTYRSDDLEFTFAARGWAECVSLGHFETWEKRFVSTQEFFQPRF AQARIIGDQMMKKVLESAKDR* |
Coding | >Hirsu2|1006 ATGCTTCGATGCTCTGTTGCTGAAGCCCCATTCTTGCAGAATAAGATCGAGATATGCCGTAACGGCCACCTCGTG TCCCGCGCCAGCGACTTCATCATCTACAGCGTCGAAGCTGCCATCATTGACAGGGTCATTGCCCGCTATGGCCCG TCCACCAAGATGGGAGCCATCGTCGGCGGCCAGACATCGTGTAAGTCACCCGAGATCGCGGCATTCGAGGCCTAT CTCCCGGCGGACGTGTCGATCGTGTCGTGCCACTCGCTGCACGGGCCGGGCGTCGACCCGCACAACCAGCCGCTC GTCATCATCCAGCACCGAGCGCCAGACGCAGCGGTGCGGACGGTGGAGATGGTGCTGGCCTGCCTGCGGTCGCAA TTCGTGCGGCTGACGGCGCGGGAGCACGACCGCATCACGGCCGACACACAGGCCGTCACGCACGCCGCCTTCCTG TCCATGGGCAAGGCCTGGCACGCCAACCGGCAGTTCCCATGGGAGCTGAGTCGATACGTTGGCGGCATCGAGAAC GTCAAGATCAACACGATGCTGCGCATCTACGGTCAGAAGTGGCACGTCTACGCCGGCCTGGCCATCCTCAACCCC GAGGCCCGCAAGCAGGTGGCCCAGTACGCCGAGAGCGTGACGCAGCTGTACACGCTGATGCTCGAGGGTGACGTC GATAGCCTGCGCGAGCGCGTCCACGCCGCCCGCGACAAGGTCTTCGGCCCGCCCGAGGCTTGGGCCGCCCGCCCG CCGCTGATCGAGCCGTCCGTACTGCCGTCTTTCTCGCTCGGGGCCCCCGCCGACGCCGCGCCACGGCCCAACAAC CACCTCTCCCTGCTGGCCATGGTCGACTGTTGGGCCGCCCTGGGCATCGTCCCCTACGAGCACATGCTGTGTAGC ACTCCACTCTTCCGCCTGCGCCTCGGCGTCACCGAGCACCTCTTCCGCAGCCCCAGCCTGCTGGACGAGGCCCTG CGCACCGCCGTCGACGACAAGACCTATCGAAGCGACGACCTCGAGTTTACCTTCGCCGCCCGTGGATGGGCCGAG TGCGTCAGCCTCGGCCACTTCGAGACGTGGGAGAAGCGCTTTGTGAGCACCCAGGAGTTCTTCCAGCCCCGCTTT GCCCAAGCCAGGATCATTGGAGATCAGATGATGAAGAAGGTGTTGGAAAGCGCAAAGGATCGATAA |
Transcript | >Hirsu2|1006 ATGCTTCGATGCTCTGTTGCTGAAGCCCCATTCTTGCAGAATAAGATCGAGATATGCCGTAACGGCCACCTCGTG TCCCGCGCCAGCGACTTCATCATCTACAGCGTCGAAGCTGCCATCATTGACAGGGTCATTGCCCGCTATGGCCCG TCCACCAAGATGGGAGCCATCGTCGGCGGCCAGACATCGTGTAAGTCACCCGAGATCGCGGCATTCGAGGCCTAT CTCCCGGCGGACGTGTCGATCGTGTCGTGCCACTCGCTGCACGGGCCGGGCGTCGACCCGCACAACCAGCCGCTC GTCATCATCCAGCACCGAGCGCCAGACGCAGCGGTGCGGACGGTGGAGATGGTGCTGGCCTGCCTGCGGTCGCAA TTCGTGCGGCTGACGGCGCGGGAGCACGACCGCATCACGGCCGACACACAGGCCGTCACGCACGCCGCCTTCCTG TCCATGGGCAAGGCCTGGCACGCCAACCGGCAGTTCCCATGGGAGCTGAGTCGATACGTTGGCGGCATCGAGAAC GTCAAGATCAACACGATGCTGCGCATCTACGGTCAGAAGTGGCACGTCTACGCCGGCCTGGCCATCCTCAACCCC GAGGCCCGCAAGCAGGTGGCCCAGTACGCCGAGAGCGTGACGCAGCTGTACACGCTGATGCTCGAGGGTGACGTC GATAGCCTGCGCGAGCGCGTCCACGCCGCCCGCGACAAGGTCTTCGGCCCGCCCGAGGCTTGGGCCGCCCGCCCG CCGCTGATCGAGCCGTCCGTACTGCCGTCTTTCTCGCTCGGGGCCCCCGCCGACGCCGCGCCACGGCCCAACAAC CACCTCTCCCTGCTGGCCATGGTCGACTGTTGGGCCGCCCTGGGCATCGTCCCCTACGAGCACATGCTGTGTAGC ACTCCACTCTTCCGCCTGCGCCTCGGCGTCACCGAGCACCTCTTCCGCAGCCCCAGCCTGCTGGACGAGGCCCTG CGCACCGCCGTCGACGACAAGACCTATCGAAGCGACGACCTCGAGTTTACCTTCGCCGCCCGTGGATGGGCCGAG TGCGTCAGCCTCGGCCACTTCGAGACGTGGGAGAAGCGCTTTGTGAGCACCCAGGAGTTCTTCCAGCCCCGCTTT GCCCAAGCCAGGATCATTGGAGATCAGATGATGAAGAAGGTGTTGGAAAGCGCAAAGGATCGATAA |
Gene | >Hirsu2|1006 ATGCTTCGATGCTCTGTTGCTGAAGCCCCATTCTTGCAGAATAAGATCGAGATATGCCGTAACGGCCACCTCGTG TCCCGCGCCAGCGACTTCATCATCTACAGCGTCGAAGCTGCCATCATTGACAGGGTCATTGCCCGCTATGGCCCG TGTAAGATGTCCGAACCTCCCCTCCAGATTCCTCTCGCCCCATAATATGATCCGGGGAAAGAGGGGGAAGAGACC AGCCCCTCCCCTCCCCCTCCCCCTCAGTTGTCGCCTTTCTCTCCCCTCCTGTTCTAACGCGTGTCGCCGTGACTG TCCAGCCACCAAGATGGGAGCCATCGTCGGCGGCCAGACATCGTGTAAGTCACCCGAGATCGCGGCATTCGAGGC CTATCTCCCGGCGGACGTGTCGATCGTGTCGTGCCACTCGCTGCACGGGCCGGGCGTCGACCCGCACAACCAGCC GCTCGTCATCATCCAGCACCGAGCGCCAGACGCAGCGGTGCGGACGGTGGAGATGGTGCTGGCCTGCCTGCGGTC GCAATTCGTGCGGCTGACGGCGCGGGAGCACGACCGCATCACGGCCGACACACAGGCCGTCACGCACGCCGCCTT CCTGTCCATGGGCAAGGCCTGGCACGCCAACCGGCAGTTCCCATGGGAGCTGAGTCGATACGTTGGCGGCATCGA GAACGTCAAGATCAACACGATGCTGCGCATCTACGGTCAGAAGTGGCACGTCTACGCCGGCCTGGCCATCCTCAA CCCCGAGGCCCGCAAGCAGGTGGCCCAGTACGCCGAGAGCGTGACGCAGCTGTACACGCTGATGCTCGAGGGTGA CGTCGATAGCCTGCGCGAGCGCGTCCACGCCGCCCGCGACAAGGTCTTCGGCCCGCCCGAGGCTTGGGCCGCCCG CCCGCCGCTGATCGAGCCGTCCGTACTGCCGTCTTTCTCGCTCGGGGCCCCCGCCGACGCCGCGCCACGGCCCAA CAACCACCTCTCCCTGCTGGCCATGGTCGACTGTTGGGCCGCCCTGGGCATCGTCCCCTACGAGCACATGCTGTG TAGCACTCCACTCTTCCGCCTGCGCCTCGGCGTCACCGAGCACCTCTTCCGCAGCCCCAGCCTGCTGGACGAGGC CCTGCGCACCGCCGTCGACGACAAGACCTATCGAAGCGACGACCTCGAGTTTACCTTCGCCGCCCGTGGATGGGC CGAGTGCGTCAGCCTCGGCCACTTCGAGACGTGGGAGAAGCGCTTTGTGAGCACCCAGGAGTTCTTCCAGCCCCG CTTTGCCCAAGCCAGGATCATTGGAGATCAGATGATGAAGAAGGTGTTGGAAAGCGCAAAGGATCGATAA |